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Opendata, web and dolomites

West-Life

World-wide E-infrastructure for structural biology

Total Cost €

EC-Contrib. €

Partnership

Views

Outcomes and
results

West-Life project word cloud

Explore the words cloud of the West-Life project. It provides you a very rough idea of what is the project "West-Life" about.

relevance automated automatically human structure effort combined technique infrastructure extend structural little integrate expert integration central repository prokaryotic reflecting pilot macromolecules lacking experiments pipelines publication egi macromolecular simpler techniques biology organisms single complementary supports service capture shifting history overview links health datasets precondition data handle biologists final facilities journals services performed deposition incomplete protein visiting uses public eudat provision exist metadata bank standards infrastructures machinery storing altogether stores ing benefit domain instruct ones experimental visited multiple

Project "West-Life" data sheet

The following table provides information about the project.

Coordinator	SCIENCE AND TECHNOLOGY FACILITIES COUNCIL There are not information about this coordinator. Please contact Fabio for more information, thanks.
Coordinator Country	United Kingdom [UK]
Project website	http://about.west-life.eu
Total cost	3˙981˙125 €
EC max contribution	3˙981˙125 € (100%)
Programme	1. H2020-EU.1.4.1.3. (Development, deployment and operation of ICT-based e-infrastructures)
Code Call	H2020-EINFRA-2015-1
Funding Scheme	RIA
Starting year	2015
Duration (year-month-day)	from 2015-11-01 to 2018-10-31

Partnership

Take a look of project's partnership.

#	participants	country	role	EC contrib. [€]
1	UNITED KINGDOM RESEARCH AND INNOVATION UNITED KINGDOM RESEARCH AND INNOVATION Organization address address: POLARIS HOUSE NORTH STAR AVENUE city: SWINDON postcode: SN2 1FL website: n.a. contact info title: n.a. name: n.a. surname: n.a. function: n.a. email: n.a. telephone: n.a. fax: n.a.	UK (SWINDON)	coordinator	780˙750.00
2	SCIENCE AND TECHNOLOGY FACILITIES COUNCIL SCIENCE AND TECHNOLOGY FACILITIES COUNCIL Organization address address: Polaris House North Star Avenue city: SWINDON postcode: SN2 1SZ website: www.scitech.ac.uk contact info title: n.a. name: n.a. surname: n.a. function: n.a. email: n.a. telephone: n.a. fax: n.a.	UK (SWINDON)	coordinator	0.00
3	EUROPEAN MOLECULAR BIOLOGY LABORATORY EUROPEAN MOLECULAR BIOLOGY LABORATORY Organization address address: Meyerhofstrasse 1 city: HEIDELBERG postcode: 69117 website: http://www.embl.de contact info title: n.a. name: n.a. surname: n.a. function: n.a. email: n.a. telephone: n.a. fax: n.a.	DE (HEIDELBERG)	participant	641˙750.00
4	CONSORZIO INTERUNIVERSITARIO RISONANZE MAGNETICHE DI METALLO PROTEINE CONSORZIO INTERUNIVERSITARIO RISONANZE MAGNETICHE DI METALLO PROTEINE Organization address address: PIAZZA SAN MARCO 4 city: FIRENZE postcode: 50121 website: www.cerm.unifi.it contact info title: n.a. name: n.a. surname: n.a. function: n.a. email: n.a. telephone: n.a. fax: n.a.	IT (FIRENZE)	participant	421˙250.00
5	AGENCIA ESTATAL CONSEJO SUPERIOR DEINVESTIGACIONES CIENTIFICAS AGENCIA ESTATAL CONSEJO SUPERIOR DEINVESTIGACIONES CIENTIFICAS Organization address address: CALLE SERRANO 117 city: MADRID postcode: 28006 website: http://www.csic.es contact info title: n.a. name: n.a. surname: n.a. function: n.a. email: n.a. telephone: n.a. fax: n.a.	ES (MADRID)	participant	402˙500.00
6	Masarykova univerzita Masarykova univerzita Organization address address: Zerotinovo namesti 9 city: BRNO STRED postcode: 60177 website: http://www.muni.cz contact info title: n.a. name: n.a. surname: n.a. function: n.a. email: n.a. telephone: n.a. fax: n.a.	CZ (BRNO STRED)	participant	393˙250.00
7	UNIVERSITEIT UTRECHT UNIVERSITEIT UTRECHT Organization address address: HEIDELBERGLAAN 8 city: UTRECHT postcode: 3584 CS website: www.uu.nl contact info title: n.a. name: n.a. surname: n.a. function: n.a. email: n.a. telephone: n.a. fax: n.a.	NL (UTRECHT)	participant	392˙250.00
8	ISTITUTO NAZIONALE DI FISICA NUCLEARE ISTITUTO NAZIONALE DI FISICA NUCLEARE Organization address address: Via Enrico Fermi 40 city: FRASCATI postcode: 44 website: www.infn.it contact info title: n.a. name: n.a. surname: n.a. function: n.a. email: n.a. telephone: n.a. fax: n.a.	IT (FRASCATI)	participant	344˙000.00
9	LUNA SAS LUNA SAS Organization address address: 26 BIS RUE DE LA FONTAINE AU ROI city: PARIS postcode: 75011 website: n.a. contact info title: n.a. name: n.a. surname: n.a. function: n.a. email: n.a. telephone: n.a. fax: n.a.	FR (PARIS)	participant	258˙000.00
10	STICHTING HET NEDERLANDS KANKER INSTITUUT-ANTONI VAN LEEUWENHOEK ZIEKENHUIS STICHTING HET NEDERLANDS KANKER INSTITUUT-ANTONI VAN LEEUWENHOEK ZIEKENHUIS Organization address address: PLESMANLAAN 121 city: AMSTERDAM postcode: 1066 CX website: www.nki.nl contact info title: n.a. name: n.a. surname: n.a. function: n.a. email: n.a. telephone: n.a. fax: n.a.	NL (AMSTERDAM)	participant	194˙625.00
11	INSTRUCT ACADEMIC SERVICES LIMITED INSTRUCT ACADEMIC SERVICES LIMITED Organization address address: UNIVERSITY OF OXFORD OFFICES WELLINGTON SQUARE city: OXFORD postcode: OX1 2JD website: n.a. contact info title: n.a. name: n.a. surname: n.a. function: n.a. email: n.a. telephone: n.a. fax: n.a.	UK (OXFORD)	participant	152˙750.00

Map

Project objective

The focus of structural biology is shifting from single macromolecules produced by simpler prokaryotic organisms, to the macromolecular machinery of higher organisms, including systems of central relevance for human health. Structural biologists are expert in one or more techniques. They now often need to use complementary techniques in which they are less expert. Instruct supports them in using multiple experimental techniques, and visiting multiple experimental facilities, within a single project. The Protein Data Bank is a public repository for the final structure. Journals require deposition as a precondition of publication. However, metadata is often incomplete. This project will pilot an infrastructure for storing and processing data that supports the growing use of combined techniques. There are some technique-specific pipelines for data analysis and structure determination. Little is available in terms of automated pipelines to handle integrated datasets. Integrated management of structural biology data from different techniques is lacking altogether. The proposed activity will integrate the data management facilities that already exist, and enable the provision of new ones. The resulting integration will provide users with an overview of the experiments performed at the different research infrastructures visited, and links to the different data stores. It will extend existing facilities for processing this data. As processing is performed, it will automatically capture metadata reflecting the history of the project. The effort will use existing metadata standards, and integrate with them new domain-specific metadata terms. This proposal will develop application level service specific to uses cases in structural biology, enabling structural biologists to get the benefit of the generic services developed by EUDAT and the EGI.

Deliverables

List of deliverables.
Report on existing metadata standards, and proposals for new vocabularies	Documents, reports	2019-10-29 14:54:03
Final report	Documents, reports	2019-10-29 14:54:09
Sustainability report	Documents, reports	2019-10-29 14:54:04
Report on Final project conference	Documents, reports	2019-10-29 14:54:04
A HADDOCK server for EM	Documents, reports	2019-10-11 14:45:43
Update report on activities of the helpdesk	Documents, reports	2019-10-11 14:45:43
Final report on deployment of consolidated platform and the overall architecture	Documents, reports	2019-10-11 14:45:43
Report on Assembly queries	Documents, reports	2019-10-11 14:45:43
EM quality assurance workflow	Documents, reports	2019-10-11 14:45:43
Report on the progress of the deployment of consolidated platform and its inteactions with infrastructure	Documents, reports	2019-10-11 14:45:43
A REFMAC server for EM and NMR	Documents, reports	2019-10-11 14:45:43
Report on industrial user engagement	Documents, reports	2019-10-11 14:45:43
Repositories	Documents, reports	2019-10-11 14:45:43
Quality analysis workflow for predicted complexes	Documents, reports	2019-10-11 14:45:43
Report on available VMs with associated documentation/use case for each of them	Documents, reports	2019-10-11 14:45:43
Report on prototypes constructed using Big Data approaches	Documents, reports	2019-10-11 14:45:43
Report on access and usage statistics of the various services	Documents, reports	2019-10-11 14:45:43
ProteinCCD with construct scoring and ranking	Documents, reports	2019-10-11 14:45:43
Report on the activities of the help desk	Documents, reports	2019-10-11 14:45:43
Report on the access and usage statistics	Documents, reports	2019-10-11 14:45:43
Report on Provenance	Open Research Data Pilot	2019-10-11 14:45:43
Update of requirements by other RI	Documents, reports	2019-10-11 14:45:43
Interim report on T2.1	Documents, reports	2019-10-11 14:45:42
Multi-core implementation of PDB_REDO server	Documents, reports	2019-10-11 14:45:42
VRE-integrated PDBe search and query APIs	Documents, reports	2019-10-11 14:45:42
ProteinCCD with new analysis options	Documents, reports	2019-10-11 14:45:42
Report on experience with deployment of consolidated platform and its interaction with infrastructure	Documents, reports	2019-10-11 14:45:42
Overview of external datasets, strategy of access methods, and implications on the portal architecture	Documents, reports	2019-10-11 14:45:42
Common security model design	Documents, reports	2019-10-11 14:45:42
Interim report on T2.2	Documents, reports	2019-10-11 14:45:43
Draft sustainability work plan	Documents, reports	2019-10-11 14:45:42
Periodic report 1	Documents, reports	2019-10-11 14:45:42
Project web pages	Websites, patent fillings, videos etc.	2019-10-11 14:45:42
Report on Virtual folder	Documents, reports	2019-10-11 14:45:42
Consolidated architecture of job submission and interaction with infrastructure	Documents, reports	2019-10-11 14:45:42
D1.1 Report on Kick off meeting	Documents, reports	2019-10-11 14:45:42
Overview (baseline) of services and portals to be integrated into the new VRE	Documents, reports	2019-10-11 14:45:42
Project portal	Websites, patent fillings, videos etc.	2019-10-11 14:45:42
Publication of a joint document on the usage of structural data in different biomedical RIs	Documents, reports	2019-10-11 14:45:42
Report on requirements by other RI	Documents, reports	2019-10-11 14:45:42
Organisation of a round table or joint meeting involving ESFRIs	Documents, reports	2019-10-11 14:45:42
Summary report of SB community engagement	Documents, reports	2019-10-11 14:45:42
Assessment of the life cycle of structural data and comparison with other scientific data	Documents, reports	2019-10-11 14:45:42

Take a look to the deliverables list in detail: detailed list of West-Life deliverables.

Publications

List of publications.
year	authors and title	journal	last update
2018	Katarina Elez, Alexandre M. J. J. Bonvin, Anna Vangone Distinguishing crystallographic from biological interfaces in protein complexes: role of intermolecular contacts and energetics for classification published pages: , ISSN: 1471-2105, DOI: 10.1186/s12859-018-2414-9	BMC Bioinformatics 19/S15	2019-10-29
2018	Alessia Lasorsa, Idir Malki, FranÃ§ois-Xavier Cantrelle, Hamida Merzougui, Emmanuelle Boll, Jean-Charles Lambert, Isabelle Landrieu Structural Basis of Tau Interaction With BIN1 and Regulation by Tau Phosphorylation published pages: , ISSN: 1662-5099, DOI: 10.3389/fnmol.2018.00421	Frontiers in Molecular Neuroscience 11	2019-10-29
2017	Stefano Giuntini, Linda Cerofolini, Enrico Ravera, Marco Fragai, Claudio Luchinat Atomic structural details of a protein grafted onto gold nanoparticles published pages: , ISSN: 2045-2322, DOI: 10.1038/s41598-017-18109-z	Scientific Reports 7/1	2019-10-29
2018	Zeynep Kurkcuoglu, Panagiotis I. Koukos, Nevia Citro, Mikael E. Trellet, J. P. G. L. M. Rodrigues, Irina S. Moreira, Jorge Roel-Touris, Adrien S. J. Melquiond, Cunliang Geng, JÃ¶rg Schaarschmidt, Li C. Xue, Anna Vangone, A. M. J. J. Bonvin Performance of HADDOCK and a simple contact-based proteinâ€“ligand binding affinity predictor in the D3R Grand Challenge 2 published pages: 175-185, ISSN: 0920-654X, DOI: 10.1007/s10822-017-0049-y	Journal of Computer-Aided Molecular Design 32/1	2019-10-29
2017	A. Vangone, J. P. G. L. M. Rodrigues, L. C. Xue, G. C. P. van Zundert, C. Geng, Z. Kurkcuoglu, M. Nellen, S. Narasimhan, E. Karaca, M. van Dijk, A. S. J. Melquiond, K. M. Visscher, M. Trellet, P. L. Kastritis, A. M. J. J. Bonvin Sense and simplicity in HADDOCK scoring: Lessons from CASP-CAPRI round 1 published pages: 417-423, ISSN: 0887-3585, DOI: 10.1002/prot.25198	Proteins: Structure, Function, and Bioinformatics 85/3	2019-10-29
2018	Evgeny Krissinel, Ville Uski, Andrey Lebedev, Martyn Winn, Charles Ballard Distributed computing for macromolecular crystallography published pages: 143-151, ISSN: 2059-7983, DOI: 10.1107/S2059798317014565	Acta Crystallographica Section D Structural Biology 74/2	2019-10-29
2017	Irina S. Moreira, Panagiotis I. Koukos, Rita Melo, Jose G. Almeida, Antonio J. Preto, Joerg Schaarschmidt, Mikael Trellet, Zeynep H. GÃ¼mÃ¼ÅŸ, Joaquim Costa, Alexandre M. J. J. Bonvin SpotOn: High Accuracy Identification of Protein-Protein Interface Hot-Spots published pages: , ISSN: 2045-2322, DOI: 10.1038/s41598-017-08321-2	Scientific Reports 7/1	2019-10-29
2018	Bart van Beusekom, Wouter G. Touw, Mahidhar Tatineni, Sandeep Somani, Gunaretnam Rajagopal, Jinquan Luo, Gary L. Gilliland, Anastassis Perrakis, Robbie P. Joosten Homology-based hydrogen bond information improves crystallographic structures in the PDB published pages: 798-808, ISSN: 0961-8368, DOI: 10.1002/pro.3353	Protein Science 27/3	2019-10-29
2013	Mikael Trellet, Adrien S. J. Melquiond, Alexandre M. J. J. Bonvin A Unified Conformational Selection and Induced Fit Approach to Protein-Peptide Docking published pages: e58769, ISSN: 1932-6203, DOI: 10.1371/journal.pone.0058769	PLoS ONE 8/3	2019-10-29
2016	Linda Cerofolini, Sabrina Amar, Janelle L. Lauer, Tommaso Martelli, Marco Fragai, Claudio Luchinat, Gregg B. Fields Bilayer Membrane Modulation of Membrane Type 1 Matrix Metalloproteinase (MT1-MMP) Structure and Proteolytic Activity published pages: , ISSN: 2045-2322, DOI: 10.1038/srep29511	Scientific Reports 6/1	2019-10-29
2013	Robert Dagil, Charlotte O\'Shea, Anders NykjÃ¦r, Alexandre M. J. J. Bonvin, Birthe B. Kragelund Gentamicin Binds to the Megalin Receptor as a Competitive Inhibitor Using the Common Ligand Binding Motif of Complement Type Repeats published pages: 4424-4435, ISSN: 0021-9258, DOI: 10.1074/jbc.M112.434159	Journal of Biological Chemistry 288/6	2019-10-29
2016	Dimitrios Spiliotopoulos, Panagiotis L. Kastritis, Adrien S. J. Melquiond, Alexandre M. J. J. Bonvin, Giovanna Musco, Walter Rocchia, Andrea Spitaleri dMM-PBSA: A New HADDOCK Scoring Function for Protein-Peptide Docking published pages: , ISSN: 2296-889X, DOI: 10.3389/fmolb.2016.00046	Frontiers in Molecular Biosciences 3	2019-10-29
2016	G.C.P. van Zundert, A.M.J.J. Bonvin Defining the limits and reliability of rigid-body fitting in cryo-EM maps using multi-scale image pyramids published pages: 252-258, ISSN: 1047-8477, DOI: 10.1016/j.jsb.2016.06.011	Journal of Structural Biology 195/2	2019-10-29
2017	David Dilworth, Santosh K. Upadhyay, Pierre Bonnafous, Amiirah Bibi Edoo, Sarah Bourbigot, Francy Pesek-Jardim, Geoff Gudavicius, Jason J. Serpa, Evgeniy V. Petrotchenko, Christoph H. Borchers, Christopher J. Nelson, Cameron D. Mackereth The basic tilted helix bundle domain of the prolyl isomerase FKBP25 is a novel double-stranded RNA binding module published pages: 11989-12004, ISSN: 0305-1048, DOI: 10.1093/nar/gkx852	Nucleic Acids Research 45/20	2019-10-29
2018	Joerg Schaarschmidt, Bohdan Monastyrskyy, Andriy Kryshtafovych, Alexandre M.J.J. Bonvin Assessment of contact predictions in CASP12: Co-evolution and deep learning coming of age published pages: 51-66, ISSN: 0887-3585, DOI: 10.1002/prot.25407	Proteins: Structure, Function, and Bioinformatics 86	2019-10-29
2015	Segura, Joan; Sanchez-Garcia, Ruben; Martinez, Marta; Cuenca-Alba, Jesus; Tabas-Madrid, Daniel; Sorzano, C.O.S; Carazo, JM 3DBIONOTES v2.0: a web server for the automatic annotation of macromolecular structures published pages: , ISSN: 1367-4803, DOI: 10.5281/zenodo.1038019	Bioinformatics 32	2019-10-29
2018	Fruzsina Hobor, Andre Dallmann, Neil J. Ball, Carla Cicchini, Cecilia Battistelli, Roksana W. Ogrodowicz, Evangelos Christodoulou, Stephen R. Martin, Alfredo Castello, Marco Tripodi, Ian A. Taylor, Andres Ramos A cryptic RNA-binding domain mediates Syncrip recognition and exosomal partitioning of miRNA targets published pages: , ISSN: 2041-1723, DOI: 10.1038/s41467-018-03182-3	Nature Communications 9/1	2019-10-29
2018	Nelly Morellet, Xianghong Li, Silke A Wieninger, Jennifer L Taylor, Julien Bischerour, SÃ©verine Moriau, Ewen Lescop, Benjamin Bardiaux, Nathalie Mathy, Nadine Assrir, Mireille BÃ©termier, Michael Nilges, Alison B Hickman, Fred Dyda, Nancy L Craig, Eric Guittet Sequence-specific DNA binding activity of the cross-brace zinc finger motif of the piggyBac transposase published pages: 2660-2677, ISSN: 0305-1048, DOI: 10.1093/nar/gky044	Nucleic Acids Research 46/5	2019-10-29
2017	Valeria Putignano, Antonio Rosato, Lucia Banci, Claudia Andreini MetalPDB in 2018: a database of metal sites in biological macromolecular structures published pages: D459-D464, ISSN: 0305-1048, DOI: 10.1093/nar/gkx989	Nucleic Acids Research 46/D1	2019-10-29
2017	Katherine A. Gentry, Elke Prade, Carlo Barnaba, Meng Zhang, Mukesh Mahajan, Sang-Choul Im, G. M. Anantharamaiah, Satoshi Nagao, Lucy Waskell, Ayyalusamy Ramamoorthy Kinetic and Structural Characterization of the Effects of Membrane on the Complex of Cytochrome b 5 and Cytochrome c published pages: , ISSN: 2045-2322, DOI: 10.1038/s41598-017-08130-7	Scientific Reports 7/1	2019-10-29
2018	Alberto Marra, Jiajia Dong, Tiancheng Ma, Stefano Giuntini, Elisa Crescenzo, Linda Cerofolini, Marco Martinucci, Claudio Luchinat, Marco Fragai, Cristina Nativi, Alessandro Dondoni Protein Glycosylation through Sulfur Fluoride Exchange (SuFEx) Chemistry: The Key Role of a Fluorosulfate Thiolactoside published pages: , ISSN: 0947-6539, DOI: 10.1002/chem.201803912	Chemistry - A European Journal	2019-10-29
2018	Panagiotis I. Koukos, Li C. Xue, Alexandre M. J. J. Bonvin Proteinâ€“ligand pose and affinity prediction: Lessons from D3R Grand Challenge 3 published pages: , ISSN: 0920-654X, DOI: 10.1007/s10822-018-0148-4	Journal of Computer-Aided Molecular Design	2019-10-29
2017	Ruben Sanchez-Garcia, Carlos Sorzano, Jose Carazo, Joan Segura 3DCONS-DB: A Database of Position-Specific Scoring Matrices in Protein Structures published pages: 2230, ISSN: 1420-3049, DOI: 10.3390/molecules22122230	Molecules 22/12	2019-10-29
2018	Oleg Kovalevskiy, Robert A. Nicholls, Fei Long, Azzurra Carlon, Garib N. Murshudov Overview of refinement procedures within REFMAC 5: utilizing data from different sources published pages: 215-227, ISSN: 2059-7983, DOI: 10.1107/S2059798318000979	Acta Crystallographica Section D Structural Biology 74/3	2019-10-11
2018	Bart van Beusekom, Krista Joosten, Maarten L. Hekkelman, Robbie P. Joosten, Anastassis Perrakis Homology-based loop modeling yields more complete crystallographic protein structures published pages: 585-594, ISSN: 2052-2525, DOI: 10.1107/S2052252518010552	IUCrJ 5/5	2019-10-11
2018	Linda Cerofolini, Tommaso Staderini, Stefano Giuntini, Enrico Ravera, Marco Fragai, Giacomo Parigi, Roberta Pierattelli, Claudio Luchinat Long-range paramagnetic NMR data can provide a closer look on metal coordination in metalloproteins published pages: 71-80, ISSN: 0949-8257, DOI: 10.1007/s00775-017-1511-y	JBIC Journal of Biological Inorganic Chemistry 23/1	2019-10-11
2016	Helen M Berman, Stephen K Burley, Gerard J Kleywegt, John L Markley, Haruki Nakamura, Sameer Velankar The archiving and dissemination of biological structure data published pages: 17-22, ISSN: 0959-440X, DOI: 10.1016/j.sbi.2016.06.018	Current Opinion in Structural Biology 40	2019-10-11
2018	Mahta Mirzaei, Saeed Mirdamadi, Mohamad Reza Ehsani, Mahmoud Aminlari Production of antioxidant and ACE-inhibitory peptides from Kluyveromyces marxianus protein hydrolysates: Purification and molecular docking published pages: 696-705, ISSN: 1021-9498, DOI: 10.1016/j.jfda.2017.07.008	Journal of Food and Drug Analysis 26/2	2019-10-11
2018	Azzurra Carlon, Enrico Ravera, Giacomo Parigi, Garib N. Murshudov, Claudio Luchinat Joint X-ray/NMR structure refinement of multidomain/multisubunit systems published pages: , ISSN: 0925-2738, DOI: 10.1007/s10858-018-0212-3	Journal of Biomolecular NMR	2019-10-11
2018	Jasmine Y. Young, John D. Westbrook, Zukang Feng, Raul Sala, Ezra Peisach, Thomas J. Oldfield, Sanchayita Sen, Aleksandras Gutmanas, David R. Armstrong, John M. Berrisford, Li Chen, Minyu Chen, Luigi Di Costanzo, Dimitris Dimitropoulos, Guanghua Gao, Sutapa Ghosh, Swanand Gore, Vladimir Guranovic, Pieter M.S. Hendrickx, Brian P. Hudson, Reiko Igarashi, Yasuyo Ikegawa, Naohiro Kobayashi, Catherine L. Lawson, Yuhe Liang, Steve Mading, Lora Mak, M. Saqib Mir, Abhik Mukhopadhyay, Ardan Patwardhan, Irina Persikova, Luana Rinaldi, Eduardo Sanz-Garcia, Monica R. Sekharan, Chenghua Shao, G. Jawahar Swaminathan, Lihua Tan, Eldon L. Ulrich, Glen van Ginkel, Reiko Yamashita, Huanwang Yang, Marina A. Zhuravleva, Martha Quesada, Gerard J. Kleywegt, Helen M. Berman, John L. Markley, Haruki Nakamura, Sameer Velankar, Stephen K. Burley OneDep: Unified wwPDB System for Deposition, Biocuration, and Validation of Macromolecular Structures in the PDB Archive published pages: 536-545, ISSN: 0969-2126, DOI: 10.1016/j.str.2017.01.004	Structure 25/3	2019-10-11
2017	Swanand Gore, Eduardo Sanz GarcÃa, Pieter M.S. Hendrickx, Aleksandras Gutmanas, John D. Westbrook, Huanwang Yang, Zukang Feng, Kumaran Baskaran, John M. Berrisford, Brian P. Hudson, Yasuyo Ikegawa, Naohiro Kobayashi, Catherine L. Lawson, Steve Mading, Lora Mak, Abhik Mukhopadhyay, Thomas J. Oldfield, Ardan Patwardhan, Ezra Peisach, Gaurav Sahni, Monica R. Sekharan, Sanchayita Sen, Chenghua Shao, Oliver S. Smart, Eldon L. Ulrich, Reiko Yamashita, Martha Quesada, Jasmine Y. Young, Haruki Nakamura, John L. Markley, Helen M. Berman, Stephen K. Burley, Sameer Velankar, Gerard J. Kleywegt Validation of Structures in the Protein Data Bank published pages: 1916-1927, ISSN: 0969-2126, DOI: 10.1016/j.str.2017.10.009	Structure 25/12	2019-10-11
2017	JesÃºs Cuenca-Alba, Laura del Cano, JosuÃ© GÃ³mez Blanco, JosÃ© Miguel de la Rosa TrevÃn, Pablo Conesa Mingo, Roberto Marabini, Carlos Oscar S. Sorzano, Jose MarÃa Carazo ScipionCloud: An integrative and interactive gateway for large scale cryo electron microscopy image processing on commercial and academic clouds published pages: 20-27, ISSN: 1047-8477, DOI: 10.1016/j.jsb.2017.06.004	Journal of Structural Biology 200/1	2019-10-11
2018	Davide Sala, Andrea Giachetti, Antonio Rosato Molecular dynamics simulations of metalloproteins: A folding study of rubredoxin from Pyrococcus furiosus published pages: 77-96, ISSN: 2377-9098, DOI: 10.3934/biophy.2018.1.77	AIMS Biophysics 5/1	2019-10-11
2018	Jasmine Y Young, John D Westbrook, Zukang Feng, Ezra Peisach, Irina Persikova, Raul Sala, Sanchayita Sen, John M Berrisford, G Jawahar Swaminathan, Thomas J Oldfield, Aleksandras Gutmanas, Reiko Igarashi, David R Armstrong, Kumaran Baskaran, Li Chen, Minyu Chen, Alice R Clark, Luigi Di Costanzo, Dimitris Dimitropoulos, Guanghua Gao, Sutapa Ghosh, Swanand Gore, Vladimir Guranovic, Pieter M S Hendrickx, Brian P Hudson, Yasuyo Ikegawa, Yumiko Kengaku, Catherine L Lawson, Yuhe Liang, Lora Mak, Abhik Mukhopadhyay, Buvaneswari Narayanan, Kayoko Nishiyama, Ardan Patwardhan, Gaurav Sahni, Eduardo Sanz-GarcÃa, Junko Sato, Monica R Sekharan, Chenghua Shao, Oliver S Smart, Lihua Tan, Glen van Ginkel, Huanwang Yang, Marina A Zhuravleva, John L Markley, Haruki Nakamura, Genji Kurisu, Gerard J Kleywegt, Sameer Velankar, Helen M Berman, Stephen K Burley Worldwide Protein Data Bank biocuration supporting open access to high-quality 3D structural biology data published pages: , ISSN: 1758-0463, DOI: 10.1093/database/bay002	Database 2018	2019-10-11
2018	Zorica LatinoviÄ‡, Adrijana Leonardi, Lidija KovaÄiÄ, Cho Koh, Jernej Å ribar, Alenka Bakija, Divi Venkateswarlu, R. Kini, Igor KriÅ¾aj The First Intrinsic Tenase Complex Inhibitor with Serine Protease Structure Offers a New Perspective in Anticoagulant Therapy published pages: 1713-1728, ISSN: 0340-6245, DOI: 10.1055/s-0038-1669785	Thrombosis and Haemostasis 118/10	2019-10-11
2017	Marco VERLATO, Paolo Andreetto, Jan Astalos, Miroslav Dobrucky, Andrea Giachetti, David Rebatto, Antonio Rosato, Viet TRAN, Lisa Zangrando EGI federated platforms supporting accelerated computing published pages: 20, ISSN: , DOI: 10.22323/1.293.0020	Proceedings of International Symposium on Grids and Clouds (ISGC) 2017 â€” PoS(ISGC2017)	2019-10-11
2018	Chris Morris The Life Cycle of Structural Biology Data published pages: , ISSN: 1683-1470, DOI: 10.5334/dsj-2018-026	Data Science Journal 17	2019-10-11
2016	Irina de Sousa Moreira Supervised Classification Applied to Hot-Spot Detection in Protein-Protein Interfaces published pages: , ISSN: , DOI:	30	2019-10-11
2018	J. GÃ³mez-Blanco, J.M. de la Rosa-TrevÃn, R. Marabini, L. del Cano, A. JimÃ©nez, M. MartÃnez, R. Melero, T. Majtner, D. Maluenda, J. Mota, Y. Rancel, E RamÃrez-Aportela, J.L. Vilas, M. Carroni, S. Fleischmann, E. Lindahl, A.W. Ashton, M. Basham, D.K. Clare, K. Savage, C.A. Siebert, G.G. Sharov, C.O.S. Sorzano, P. Conesa, J.M. Carazo Using Scipion for stream image processing at Cryo-EM facilities published pages: 457-463, ISSN: 1047-8477, DOI: 10.1016/j.jsb.2018.10.001	Journal of Structural Biology 204/3	2019-10-11
2019	Linda Cerofolini, Stefano Giuntini, Azzurra Carlon, Enrico Ravera, Vito Calderone, Marco Fragai, Giacomo Parigi, Claudio Luchinat Characterization of PEGylated Asparaginase: New Opportunities from NMR Analysis of Large PEGylated Therapeutics published pages: , ISSN: 0947-6539, DOI: 10.1002/chem.201804488	Chemistry - A European Journal	2019-10-11
2018	Elisabetta Argenzio, Jeffrey Klarenbeek, Katarzyna M. Kedziora, Leila Nahidiazar, Tadamoto Isogai, Anastassis Perrakis, Kees Jalink, Wouter H. Moolenaar, Metello Innocenti Profilin binding couples chloride intracellular channel protein CLIC4 to RhoAâ€“mDia2 signaling and filopodium formation published pages: 19161-19176, ISSN: 0021-9258, DOI: 10.1074/jbc.RA118.002779	Journal of Biological Chemistry 293/50	2019-10-11

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