#	Pagina
attuale pagina	/open-h2020/projects/201384/index.html

Opendata, web and dolomites

FORGENET

A novel approach for detecting polygenic adaptation applied to FORest tree candidate GEne NETworks

Total Cost €

EC-Contrib. €

Partnership

Views

Outcomes and
results

FORGENET project word cloud

Explore the words cloud of the FORGENET project. It provides you a very rough idea of what is the project "FORGENET" about.

species mechanisms gene view hypothesis associations adaptive drought independently populations topology seems estimating straightforward netadapt interactions evolution agreed reached spruces genes adaptability forgenet genotype polygenic detecting genotyped offers natural conifers members pine regarding coniferous linkage shift epistatic acts inherent time haploid multiple adapt adaptations flowering experimental ample interaction tolerance detect published gradients networks neutrality construct exploits traits environments evolutionary act small first disequilibrium indicates functional potentially trees climate changing mediterranean genetics data candidate genomic latitudinal nevertheless network forest endangered lacking perpetual events paradigm tissue proposes unravelling radically genotyping null statistics play

Project "FORGENET" data sheet

The following table provides information about the project.

Coordinator	UNIVERSITAT ZURICH Organization address address: RAMISTRASSE 71 city: ZURICH postcode: 8006 website: n.a. contact info title: n.a. name: n.a. surname: n.a. function: n.a. email: n.a. telephone: n.a. fax: n.a.
Coordinator Country	Switzerland [CH]
Project website	https://sites.google.com/site/katalincsillery/research/forgenet
Total cost	175˙419 €
EC max contribution	175˙419 € (100%)
Programme	1. H2020-EU.1.3.2. (Nurturing excellence by means of cross-border and cross-sector mobility)
Code Call	H2020-MSCA-IF-2015
Funding Scheme	MSCA-IF-EF-ST
Starting year	2017
Duration (year-month-day)	from 2017-09-01 to 2019-10-01

Partnership

Take a look of project's partnership.

#	participants	country	role	EC contrib. [€]
1	UNIVERSITAT ZURICH UNIVERSITAT ZURICH Organization address address: RAMISTRASSE 71 city: ZURICH postcode: 8006 website: n.a. contact info title: n.a. name: n.a. surname: n.a. function: n.a. email: n.a. telephone: n.a. fax: n.a.	CH (ZURICH)	coordinator	175˙419.00

Map

Project objective

Unravelling the mechanisms of selection that allow species to adapt to changing environments has been a perpetual goal of evolutionary genetics. A current paradigm shift seems to radically change our view regarding the major mechanisms of evolutionary change. Ample experimental data indicates that most traits that potentially play a role in adaptations are controlled by many genes that may not act independently, but as members of complex gene interaction networks. Thus, it is widely agreed that most adaptation events in natural populations are reached via so-called polygenic adaptation, involving small changes at multiple genes at a time. Nevertheless, methods are still lacking to detect such adaptive gene associations. The main objective of FORGENET is to propose NetAdapt, a network-based test of polygenic selection for candidate-gene data. NetAdapt exploits candidate-gene data both as genotype and functional genomic data. First, based on the functional genomic information inherent to candidate gene data, it proposes to construct a gene interaction network, whose topology can be used to define a null hypothesis of neutrality. Second, based on the genotype data, it proposes a test for detecting selection on gene interactions, i.e. epistatic selection, based on linkage disequilibrium statistics. NetAdapt is expected to enhance our understanding how selection acts on gene networks and to propose new candidate genes for future genotyping. NetAdapt will be applied to published data on coniferous forest trees that have been genotyped from haploid tissue, which offers a straightforward application. Many conifers are endangered by climate change and estimating their adaptability is an important European research priority. FORGENET will study the evolution of flowering time genes at spruces along latitudinal gradients, and drought tolerance in Mediterranean pine species.

Publications

List of publications.
year	authors and title	journal	last update
2018	Katalin CsillÃ©ry, Alejandra RodrÃguez-Verdugo, Christian Rellstab, FrÃ©dÃ©ric Guillaume Detecting the genomic signal of polygenic adaptation and the role of epistasis in evolution published pages: 606-612, ISSN: 0962-1083, DOI: 10.1111/mec.14499	Molecular Ecology 27/3	2020-03-11
2019	Katalin CsillÃ©ry, Otso Ovaskainen, Christoph Sperisen, Nina Buchmann, Alex Widmer, Felix Gugerli Adaptation to local climate in multi-trait space: evidence from silver fir (Abies alba Mill.) populations across a heterogeneous environment published pages: , ISSN: 0018-067X, DOI: 10.1038/s41437-019-0240-0	Heredity	2020-03-11

Are you the coordinator (or a participant) of this project? Plaese send me more information about the "FORGENET" project.

For instance: the website url (it has not provided by EU-opendata yet), the logo, a more detailed description of the project (in plain text as a rtf file or a word file), some pictures (as picture files, not embedded into any word file), twitter account, linkedin page, etc.

Send me an email (fabio@fabiodisconzi.com) and I put them in your project's page as son as possible.

Thanks. And then put a link of this page into your project's website.

The information about "FORGENET" are provided by the European Opendata Portal: CORDIS opendata.