DD-DeCaF project deliverables
The page lists 42 deliverables related to the research project "DD-DeCaF".
List of Deliverables
| title and desprition | type | last update |
|---|---|---|
Results of optimization for selected case-studiesResults of optimization for selected case-studies Programme: H2020-EU.2.1.4. - Topic(s): BIOTEC-2-2015 |
Other | 2020-03-11 |
Large-scale kinetic models of relevant production hostsLarge-scale kinetic models of relevant production hosts Programme: H2020-EU.2.1.4. - Topic(s): BIOTEC-2-2015 |
Other | 2020-03-11 |
Bi-directional connectivity of the visualization components with APIs and data sourcesBi-directional connectivity of the visualization components with APIs and data sources Programme: H2020-EU.2.1.4. - Topic(s): BIOTEC-2-2015 |
Other | 2020-03-11 |
First version of the database providing novel functional and enzyme annotationsFirst version of the database providing novel functional and enzyme annotations Programme: H2020-EU.2.1.4. - Topic(s): BIOTEC-2-2015 |
Other | 2020-03-11 |
Large-scale kinetic models of one fungal organism with integrated enzyme biosynthesis moduleLarge-scale kinetic models of one fungal organism with integrated enzyme biosynthesis module Programme: H2020-EU.2.1.4. - Topic(s): BIOTEC-2-2015 |
Other | 2020-03-11 |
Novel enzyme and pathway candidates publicly availableNovel enzyme and pathway candidates publicly available Programme: H2020-EU.2.1.4. - Topic(s): BIOTEC-2-2015 |
Other | 2020-03-11 |
3rd annual DeCaF workshopAnnual workshop Programme: H2020-EU.2.1.4. - Topic(s): BIOTEC-2-2015 |
Websites, patent fillings, videos etc. | 2020-03-11 |
Software for designing synthetic microbial communitiesSoftware for designing synthetic microbial communities Programme: H2020-EU.2.1.4. - Topic(s): BIOTEC-2-2015 |
Other | 2020-03-11 |
Consortium-wide repository of methods, algorithms, software, and web-services that can be deployed as docker containersConsortium-wide repository of methods, algorithms, software, and web-services that can be deployed as docker containers Programme: H2020-EU.2.1.4. - Topic(s): BIOTEC-2-2015 |
Other | 2020-03-11 |
Community design software publically availableCommunity design software publically available Programme: H2020-EU.2.1.4. - Topic(s): BIOTEC-2-2015 |
Other | 2020-03-11 |
Integration of the visualization components with public data sources is implementedIntegration of the visualization components with public data sources is implemented Programme: H2020-EU.2.1.4. - Topic(s): BIOTEC-2-2015 |
Other | 2020-03-11 |
Integration of gene and pathway mining components from WP2Integration of gene and pathway mining components from WP2 Programme: H2020-EU.2.1.4. - Topic(s): BIOTEC-2-2015 |
Other | 2020-03-11 |
Technology Transfer Activities, including training to SMEsTechnology Transfer Activities, including training to SMEs Programme: H2020-EU.2.1.4. - Topic(s): BIOTEC-2-2015 |
Websites, patent fillings, videos etc. | 2020-03-11 |
Models for quantitative simulation of protein secretion by fungiModels for quantitative simulation of protein secretion by fungi Programme: H2020-EU.2.1.4. - Topic(s): BIOTEC-2-2015 |
Other | 2020-03-11 |
Web-based cell factory and community design platform (DeCaF) hosted on CSC infrastructureWeb-based cell factory and community design platform (DeCaF) hosted on CSC infrastructure Programme: H2020-EU.2.1.4. - Topic(s): BIOTEC-2-2015 |
Other | 2020-03-11 |
1st annual DeCaF workshopAnnual workshops Programme: H2020-EU.2.1.4. - Topic(s): BIOTEC-2-2015 |
Websites, patent fillings, videos etc. | 2019-07-22 |
Models for quantitative simulation of protein secretion by bacterial hostsModels for quantitative simulation of protein secretion by bacterial hosts Programme: H2020-EU.2.1.4. - Topic(s): BIOTEC-2-2015 |
Other | 2019-07-22 |
Models for quantitative simulation of protein secretionModels for quantitative simulation of protein secretion Programme: H2020-EU.2.1.4. - Topic(s): BIOTEC-2-2015 |
Other | 2019-07-22 |
2nd annual DeCaF workshopAnnual workshop Programme: H2020-EU.2.1.4. - Topic(s): BIOTEC-2-2015 |
Websites, patent fillings, videos etc. | 2019-07-22 |
Upload and access control system for processed omics dataUpload and access control system for processed omics data Programme: H2020-EU.2.1.4. - Topic(s): BIOTEC-2-2015 |
Other | 2019-07-22 |
Interactive pathway visualization components are available on the DeCaF platformInteractive pathway visualization components are available on the DeCaF platform Programme: H2020-EU.2.1.4. - Topic(s): BIOTEC-2-2015 |
Other | 2019-07-22 |
Models for yeast, E. coli and two other microorganisms that accounts for protein contentModels for yeast, E. coli and two other microorganisms that accounts for protein content Programme: H2020-EU.2.1.4. - Topic(s): BIOTEC-2-2015 |
Other | 2019-07-22 |
Algorithms for optimization using model with protein synthesis and secretionAlgorithms for optimization using model with protein synthesis and secretion Programme: H2020-EU.2.1.4. - Topic(s): BIOTEC-2-2015 |
Other | 2019-07-22 |
Cloud hosting solution for web-services on CSC compute infrastructureCloud hosting solution for web-services on CSC compute infrastructure Programme: H2020-EU.2.1.4. - Topic(s): BIOTEC-2-2015 |
Other | 2019-07-22 |
Algorithms for optimization using community modelsAlgorithms for optimization using community models Programme: H2020-EU.2.1.4. - Topic(s): BIOTEC-2-2015 |
Other | 2019-07-22 |
Functional annotation of gene catalogFunctional annotation of gene catalog Programme: H2020-EU.2.1.4. - Topic(s): BIOTEC-2-2015 |
Other | 2019-07-22 |
Software for simulating metabolic interactions in microbial communitiesSoftware for simulating metabolic interactions in microbial communities Programme: H2020-EU.2.1.4. - Topic(s): BIOTEC-2-2015 |
Other | 2019-07-22 |
Large-scale kinetic models of one bacterial organism with integrated enzyme biosynthesis moduleLarge-scale kinetic models of one bacterial organism with integrated enzyme biosynthesis module Programme: H2020-EU.2.1.4. - Topic(s): BIOTEC-2-2015 |
Other | 2019-07-22 |
Thermodynamically-curated GEMs with integrated metabolomics dataThermodynamically-curated GEMs with integrated metabolomics data Programme: H2020-EU.2.1.4. - Topic(s): BIOTEC-2-2015 |
Other | 2019-07-22 |
Community model reconstruction pipeline publically availableCommunity model reconstruction pipeline publically available Programme: H2020-EU.2.1.4. - Topic(s): BIOTEC-2-2015 |
Other | 2019-07-22 |
Functional annotation pipeline establishedFunctional annotation pipeline established Programme: H2020-EU.2.1.4. - Topic(s): BIOTEC-2-2015 |
Other | 2019-07-22 |
Metabolic interaction simulation software publically availableMetabolic interaction simulation software publically available Programme: H2020-EU.2.1.4. - Topic(s): BIOTEC-2-2015 |
Other | 2019-07-22 |
A toolbox for integration of metabolomics data into thermodynamically-curated GEMsA toolbox for integration of metabolomics data into thermodynamically-curated GEMs Programme: H2020-EU.2.1.4. - Topic(s): BIOTEC-2-2015 |
Other | 2019-05-30 |
General metaheuristics-based optimization frameworkGeneral metaheuristics-based optimization framework Programme: H2020-EU.2.1.4. - Topic(s): BIOTEC-2-2015 |
Other | 2019-05-30 |
Bioinformatics pipeline for building community metabolic modelsBioinformatics pipeline for building community metabolic models Programme: H2020-EU.2.1.4. - Topic(s): BIOTEC-2-2015 |
Other | 2019-05-30 |
Press release about the launching of the projectPress release about the launching of the project Programme: H2020-EU.2.1.4. - Topic(s): BIOTEC-2-2015 |
Websites, patent fillings, videos etc. | 2019-05-30 |
Algorithms for optimization using large-scale kinetic modelsAlgorithms for optimization using large-scale kinetic models Programme: H2020-EU.2.1.4. - Topic(s): BIOTEC-2-2015 |
Other | 2019-05-30 |
Data Management PlanFirst version of data management plan as required by Open Research Data Pilot Programme: H2020-EU.2.1.4. - Topic(s): BIOTEC-2-2015 |
Open Research Data Pilot | 2019-05-30 |
Identifier translation service for metabolite, enzyme, gene, protein and reaction identifiersIdentifier translation service for metabolite, enzyme, gene, protein and reaction identifiers Programme: H2020-EU.2.1.4. - Topic(s): BIOTEC-2-2015 |
Other | 2019-05-30 |
Project website: the report will provide a functional description of the project website, its main sections and how the access to the private area is implemented.Project website: the report will provide a functional description of the project website, its main sections and how the access to the private area is implemented Programme: H2020-EU.2.1.4. - Topic(s): BIOTEC-2-2015 |
Websites, patent fillings, videos etc. | 2019-05-30 |
Periodic newslettersAnnual newsletters distributed every 12 months Programme: H2020-EU.2.1.4. - Topic(s): BIOTEC-2-2015 |
Websites, patent fillings, videos etc. | 2019-05-30 |
Genomic/metagenomic gene catalog databaseMultiple genomic and metagenomic resources will be mined to produce a normalized gene catalog database. EMBL in-house STRING and eggNOG databases, currently providing protein-protein interactions and orthology information for more than 3600 quality-filtered genomes, will be used to obtain data from fully sequenced organisms. Additionally, 2000 human gut samples and 240 ocean samples will be exploited to extract gene pools from unculturable organisms. The expected size of the final database is estimated to be over 50M sequences. Given the amount and heterogeneity of the source data, optimal database design and administration will be critical. Therefore this task will be carried out with the technical support of biobyte Solutions (P9). Programme: H2020-EU.2.1.4. - Topic(s): BIOTEC-2-2015 |
Other | 2019-05-30 |