Explore the words cloud of the Virus-X project. It provides you a very rough idea of what is the project "Virus-X" about.
The following table provides information about the project.
Coordinator |
MATIS OHF
Organization address contact info |
Coordinator Country | Iceland [IS] |
Project website | http://virus-x.eu |
Total cost | 7˙964˙214 € |
EC max contribution | 7˙964˙092 € (100%) |
Programme |
1. H2020-EU.2.1.4. (INDUSTRIAL LEADERSHIP - Leadership in enabling and industrial technologies – Biotechnology) |
Code Call | H2020-LEIT-BIO-2015-1 |
Funding Scheme | RIA |
Starting year | 2016 |
Duration (year-month-day) | from 2016-04-01 to 2020-03-31 |
Take a look of project's partnership.
Biological sequence diversity in nowhere as apparent as in the vast sequence space of viral genomes. The Virus-X project will specifically explore the outer realms of this diversity by targeting the virosphere of selected microbial ecosystems and investigate the encoded functional variety of viral gene products. The project is driven by the expected large innovation value and unique properties of viral proteins, previously demonstrated by the many virally-derived DNA and RNA processing enzymes used in biotechnology. Concomitantly, the project will advance our understanding of important aspects of ecology in terms of viral diversity, ecosystem dynamics and virus-host interplay. Last but not least, due to the inherent challenges in gene annotation, functional assignments and other virus-specific technical obstacles of viral metagenomics, the Virus-X project specifically addresses these challenges using innovative measures in all parts of the discovery and analysis pipeline, from sampling difficult extreme biotopes, through sequencing and innovative bioinformatics to efficient production of enzymes for molecular biotechnology. Virus-X will advance the metagenomic tool-box significantly and our capabilities for future exploitation of viral biological diversity, the largest unexplored genetic reservoir on Earth.
WP3 - Scientific publications, patents or congress contribution and outreach | Documents, reports | 2019-07-22 17:09:00 |
WP1 - Scientific publications, patents or congress contribution and outreach | Documents, reports | 2019-05-09 18:31:12 |
Project website built and online | Websites, patent fillings, videos etc. | 2019-05-24 18:53:51 |
Take a look to the deliverables list in detail: detailed list of Virus-X deliverables.
year | authors and title | journal | last update |
---|---|---|---|
2019 |
Roux , Simon; Adriaenssens , Evelien; Dutilh , Bas ,; Koonin , Eugene; Kropinski , Andrew; Krupovic , Mart; Kuhn , Jens; Lavigne , Rob; Brister , J Rodney; Varsani , Arvind; Amid , Clara; Aziz , Ramy; Bordenstein , Seth; Bork , Peer; Breitbart , Mya; Cochrane , Guy; Daly , Rebecca; Desnues , Christelle; Duhaime , Melissa; Emerson , Joanne; Enault , François; Fuhrman , Jed; Hingamp , Pascal; Hugen Minimum Information about an Uncultivated Virus Genome (MIUViG) published pages: , ISSN: 1087-0156, DOI: 10.3929/ethz-b-000315358 |
https://hal.archives-ouvertes.fr/hal-01982207 10 | 2019-08-05 |
2018 |
10. Krupovic M, Cvirkaite-Krupovic V, Iranzo J, Prangishvili D, Koonin E. Viruses of archaea: Structural, functional, environmental and evolutionary genomics published pages: , ISSN: 1872-7492, DOI: |
Virus research | 2019-08-05 |
2017 |
Clovis Galiez, Matthias Siebert, François Enault, Jonathan Vincent, Johannes Söding WIsH: who is the host? Predicting prokaryotic hosts from metagenomic phage contigs published pages: 3113-3114, ISSN: 1367-4803, DOI: 10.1093/bioinformatics/btx383 |
Bioinformatics 33/19 | 2019-08-05 |
2018 |
17. Sandaa, R.A, Bratbak, G. Is a virus important? And some other questions published pages: , ISSN: 1999-4915, DOI: |
Viruses | 2019-08-05 |
2018 |
Yuchen Wang, Beibei Chen, Mengzhuo Cao, Linshan Sima, David Prangishvili, Xiangdong Chen, Mart Krupovic Rolling-circle replication initiation protein of haloarchaeal sphaerolipovirus SNJ1 is homologous to bacterial transposases of the IS91 family insertion sequences published pages: 416-421, ISSN: 0022-1317, DOI: 10.1099/jgv.0.001009 |
Journal of General Virology 99/3 | 2019-08-05 |
2017 |
Denis Ptchelkine, Ashley Gillum, Tomohiro Mochizuki, Soizick Lucas-Staat, Ying Liu, Mart Krupovic, Simon E. V. Phillips, David Prangishvili, Juha T. Huiskonen Unique architecture of thermophilic archaeal virus APBV1 and its genome packaging published pages: , ISSN: 2041-1723, DOI: 10.1038/s41467-017-01668-0 |
Nature Communications 8/1 | 2019-08-05 |
2019 |
Magdalena Plotka, Enea Sancho-Vaello, Sebastian Dorawa, Anna-Karina Kaczorowska, Lukasz P. Kozlowski, Tadeusz Kaczorowski, Kornelius Zeth Structure and function of the Ts2631 endolysin of Thermus scotoductus phage vB_Tsc2631 with unique N-terminal extension used for peptidoglycan binding published pages: , ISSN: 2045-2322, DOI: 10.1038/s41598-018-37417-6 |
Scientific Reports 9/1 | 2019-06-06 |
2018 |
Mirdita, M., Steinegger, M., and Soeding, J MMseqs2 desktop and local web server app for fast, interactive sequence searches. published pages: 419895, ISSN: , DOI: 10.1101/419895 |
bioRxiv | 2019-05-09 |
2017 |
Martin Steinegger, Johannes Söding MMseqs2 enables sensitive protein sequence searching for the analysis of massive data sets published pages: 1026–1028, ISSN: 1087-0156, DOI: 10.1038/nbt.3988 |
Nature Biotechnology 35 | 2019-06-18 |
2018 |
Martin Steinegger and Johannes Soeding Clustering huge protein sequence sets in linear time. published pages: 2542, ISSN: , DOI: 10.1101/104034 |
Nature Communications 9(1) | 2019-06-18 |
2018 |
Steinegger, M., Mirdita, M., and S ̈oding, J. Protein-level assembly increases protein sequence recovery from metagenomic samples manyfold. published pages: 386110, ISSN: , DOI: 10.1101/386110 |
bioRxiv | 2019-06-18 |
2017 |
Milot Mirdita, Lars von den Driesch, Clovis Galiez, Maria J. Martin, Johannes Söding, Martin Steinegger Uniclust databases of clustered and deeply annotated protein sequences and alignments published pages: D170-D176, ISSN: 0305-1048, DOI: 10.1093/nar/gkw1081 |
Nucleic Acids Research 45/D1 | 2019-06-18 |
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The information about "VIRUS-X" are provided by the European Opendata Portal: CORDIS opendata.