APERIM project deliverables
The page lists 10 deliverables related to the research project "APERIM".
List of Deliverables
| title and desprition | type | last update |
|---|---|---|
digital TILsorterMethod and software for TIL reconstruction employing a) deconvolution method (CNIC) and develop the algorithm for enumeration of immune cells, stromal cells, and tumour cells (I-MED). Samples used for generating data to develop the tools and validate the software: colorectal cancer. Programme: H2020-EU.3.1.6. - Topic(s): PHC-32-2014 |
Other | 2019-05-30 |
CRCclassifierA decision support model using the clinical parameters and the image descriptors derived from the analyses in task 2.1. The model will be a validated prototype using the available data. Samples used for generating data to develop the tools and validate the software: colorectal cancer. Programme: H2020-EU.3.1.6. - Topic(s): PHC-32-2014 |
Documents, reports | 2019-05-30 |
SOPs for TIL quantificationEvaluated and implemented SOPs. SOPs for routine application in pathology labs. Samples used for generating data to develop the tools and validate the software: colorectal cancer. Programme: H2020-EU.3.1.6. - Topic(s): PHC-32-2014 |
Documents, reports | 2019-05-30 |
TCR2epitopeSoftware tool for predicting epitope characteristics from the primary sequence information of TCRs. The software will include a method for identifying specificity of TCR-pMHC interaction (UU) as well as a web-database for TCRs with known specificities (MU). The data will be provided by NKI. Samples used for generating data to develop the tools and validate the software: melanoma, colorectal cancer, and ovarian cancer Programme: H2020-EU.3.1.6. - Topic(s): PHC-32-2014 |
Documents, reports | 2019-03-11 |
SOP for TCR repertoireEvaluated and implemented SOPs. SOPs for TCR repertoire. Samples used for generating data to develop the tools and validate the software: melanoma, colorectal cancer, and ovarian cancer. Programme: H2020-EU.3.1.6. - Topic(s): PHC-32-2014 |
Documents, reports | 2019-03-11 |
Evaluation of the analytical pipeline for cancer vaccinesEvaluated and implemented SOPs. Samples used for generating data to develop the tools and validate the software: melanoma, glioblastoma, and breast cancer. Programme: H2020-EU.3.1.6. - Topic(s): PHC-32-2014 |
Documents, reports | 2019-02-26 |
RDF databaseRDF version of the database ImmunoOncologySuite and SPARQL graphical editor Programme: H2020-EU.3.1.6. - Topic(s): PHC-32-2014 |
Other | 2019-02-26 |
epitopeselectorSoftware for selecting epitopes from large number of candidates. Samples used for generating data to develop the tools and validate the software: melanoma, glioblastoma, and breast cancer. Programme: H2020-EU.3.1.6. - Topic(s): PHC-32-2014 |
Other | 2019-02-26 |
Immuno Oncoclogy SuiteDatabase for molecular data (whole-exome sequencing data, microsatellite status, FACS data), clinical data (information about cancer patients, TNM staging, and density values of TILs used for immune score estimation), and imaging data (scanned whole-slide H&E images and stained IHC images) generated from colorectal cancer samples in WP2. Programme: H2020-EU.3.1.6. - Topic(s): PHC-32-2014 |
Documents, reports | 2019-02-26 |
WebpageInstitution of APERIM web page: A webpage is an absolute requirement for dissemination Programme: H2020-EU.3.1.6. - Topic(s): PHC-32-2014 |
Websites, patent fillings, videos etc. | 2019-05-30 |