eTRANSAFE project deliverables
The page lists 23 deliverables related to the research project "eTRANSAFE".
List of Deliverables
| title and desprition | type | last update |
|---|---|---|
Computational read-across workflows- first versionCompilation of computational workflows implementing read across techniques (chemical grouping or analogue identification) for relevant toxic endpoints developed in Task 8.1. The deliverable comprises, for every workflow, both the computational implementation and the documentation, following the guidelines developed in WP2. Programme: H2020-EU.3.1.7. - Topic(s): IMI2-2016-09-04 |
Documents, reports | 2020-04-14 |
Machine-learning models - first versionCompilation of predictive models based on machine-learning methods developed in Task 8.2. The deliverable comprises, for every model, both the model implementation and the documentation, following the guidelines developed in WP2. Programme: H2020-EU.3.1.7. - Topic(s): IMI2-2016-09-04 |
Documents, reports | 2020-04-14 |
Advanced data mining module - first versionSoftware implemented in a standard module supporting advanced data mining from the knowledge hub. In addition, this software (so called “Gateway†to Knowledge Hub) will provide centralized access to most of the eTRANSAFE databases and tools. Programme: H2020-EU.3.1.7. - Topic(s): IMI2-2016-09-04 |
Documents, reports | 2020-04-14 |
Predictive models repository - first versionCompilation of in silico predictive models and read-across workflows generated in Task 8.3 and 8.1, implemented in one or more standard modules. Programme: H2020-EU.3.1.7. - Topic(s): IMI2-2016-09-04 |
Documents, reports | 2020-04-14 |
Safety assessment tools - first versionSoftware implementation of the quantitative weight of evidence methods developed in Task 8.5, as described in deliverable 8.6. Programme: H2020-EU.3.1.7. - Topic(s): IMI2-2016-09-04 |
Documents, reports | 2020-04-14 |
Report on quantitative weight of evidence methods and software specifications - first versionReport describing the specifications of the software developed for supporting the quantitative weight of evidence computational methods obtained in Task 8.5. Programme: H2020-EU.3.1.7. - Topic(s): IMI2-2016-09-04 |
Documents, reports | 2020-04-14 |
Report on knowledge gathering by analysing preclinical data – final versionReport to provide details on the evolution of the knowledge gained through the analysis of preclinical data as more studies are absorbed into the system. Programme: H2020-EU.3.1.7. - Topic(s): IMI2-2016-09-04 |
Documents, reports | 2020-04-14 |
Methodology, analysis of existing related initiatives, and tools for implementationA roadmap of synergies with other projects/networks will be established, followed by implementation of the most relevant collaborations. Programme: H2020-EU.3.1.7. - Topic(s): IMI2-2016-09-04 |
Documents, reports | 2020-04-14 |
Data export and reporting module - first versionSoftware implemented in a standard module allowing to export data extracted from knowledge hub and to generate reports in standard formats relevant for toxicology. Programme: H2020-EU.3.1.7. - Topic(s): IMI2-2016-09-04 |
Documents, reports | 2020-04-14 |
Report on release of integrated textual data, identifier and semantic integration services, integrated ontologies, and ontology management and access services to consortiumReport on release of integrated textual data, identifier and semantic integration services, integrated ontologies, and ontology management and access services to consortium, covering input from Task 5.1, 5.2 and 5.3. Programme: H2020-EU.3.1.7. - Topic(s): IMI2-2016-09-04 |
Documents, reports | 2020-04-14 |
First version of knowledge gathering servicesRelease of the first version of the knowledge bases including a description of the initial overarching system architecture of these services. Programme: H2020-EU.3.1.7. - Topic(s): IMI2-2016-09-04 |
Documents, reports | 2020-04-14 |
Visualisation module - first versionSoftware implemented in a standard module for the interactive visualization of data accessible through the knowledge hub. Programme: H2020-EU.3.1.7. - Topic(s): IMI2-2016-09-04 |
Documents, reports | 2020-04-14 |
Report on consortium needs, available assets and documented knowledge hub (WP9) interfacesRequirements analysis: report on consortium needs, available assets, shared pipelines and documented knowledge hub (WP9) interfaces of (1) identifier, ontology and semantic integration services, (2) ontologies and ontology management, available assets, and interfaces to the ontologies, (3) available sources of unstructured information including historical report data, and available assets and key data providers in the consortium, including input from Task 5.1, 5.2 and 5.3. Programme: H2020-EU.3.1.7. - Topic(s): IMI2-2016-09-04 |
Documents, reports | 2020-04-14 |
Knowledge Hub and API specifications - first versionReport describing the software specifications of the knowledge hub and the application program interface. Programme: H2020-EU.3.1.7. - Topic(s): IMI2-2016-09-04 |
Documents, reports | 2020-04-14 |
Report on SEND data sharing exercise – first versionThe report will include the timelines and the amount of expected data donations, specifying which data will be provided already in SEND format, which data can be obtained in non-SEND format and which report data need to be converted. In addition, the report will set out the principles for curating SEND formatted data including, but not limited to, units conversion, synonym management (controlled terminologies) and data summarisation/ aggregation. Programme: H2020-EU.3.1.7. - Topic(s): IMI2-2016-09-04 |
Documents, reports | 2020-04-14 |
Initial Data and Knowledge Management PlanOutline for eTRANSAFE data and knowledge management policy, especially referring to research data quality, sharing and security. Programme: H2020-EU.3.1.7. - Topic(s): IMI2-2016-09-04 |
Documents, reports | 2020-04-14 |
Project communication plan and initial tool setA plan for dissemination that includes the communication objectives, target audiences, activities to be carried out and tools that will support their implementation, with connections among these components. It will also include an initial set of communication materials. Programme: H2020-EU.3.1.7. - Topic(s): IMI2-2016-09-04 |
Documents, reports | 2020-04-14 |
Report on user requirements and system specifications of database(s)\"This report will result from a series of user questionnaires and interviews based on expected use cases. User Requirements and specifications will be classified according to \"\"essential\"\", \"\"important\"\", \"\"nice-to-have\"\". The report will also summarise the security requirements and technical specification for the solution.\" Programme: H2020-EU.3.1.7. - Topic(s): IMI2-2016-09-04 |
Documents, reports | 2020-04-14 |
Deployment of a data infrastructure for consortium partner accessAn informatics infrastructure suitable for hosting databases in containerized form will be released and made available to the consortium partners for Internet access. Programme: H2020-EU.3.1.7. - Topic(s): IMI2-2016-09-04 |
Documents, reports | 2020-04-14 |
Report on the procedures for the data donation, extraction, curation and normalisation, ontology mapping, and access to pertinent datasetsThis report will describe the pharmaco-toxicological endpoints identified for extraction or collection, how they have been prioritized, the details of extraction (granularity) and the commitment of the different partners in terms of number of reports (confidential & non-confidential). In addition, the report will describe the procedures to be established for quality assurance (e.g. establishment of Clearing House) as well as data curation, normalisation and controlled terminology mapping and assign the responsibilities to achieve these tasks. Programme: H2020-EU.3.1.7. - Topic(s): IMI2-2016-09-04 |
Documents, reports | 2020-04-14 |
Report on knowledge gathering by analysing preclinical dataReport to provide details on the evolution of the knowledge gained through the analysis of preclinical data as more studies are absorbed into the system. Programme: H2020-EU.3.1.7. - Topic(s): IMI2-2016-09-04 |
Documents, reports | 2020-04-14 |
Report on SEND data sharing exercise – third versionUpdate on data sharing via SEND format. Programme: H2020-EU.3.1.7. - Topic(s): IMI2-2016-09-04 |
Documents, reports | 2020-04-09 |
Report on data gathering, processing and database – second versionThis report will serve to monitor the progress of data donation and extraction; the evolution and development of the database and the incorporation of 3rd party databases into the system. Programme: H2020-EU.3.1.7. - Topic(s): IMI2-2016-09-04 |
Documents, reports | 2020-04-09 |