SOUND project deliverables
The page lists 24 deliverables related to the research project "SOUND".
List of Deliverables
| title and desprition | type | last update |
|---|---|---|
Technical report on existing and novel methodsTechnical report on existing methods and novel methods developed in WP2 Programme: H2020-EU.3.1.6. - Topic(s): PHC-32-2014 |
Documents, reports | 2019-10-10 |
Technical report describing the design of re-capture platform for deep sequencing and validationTechnical report describing the design of re-capture platform for deep sequencing and validation on independent patient cohort. Programme: H2020-EU.3.1.6. - Topic(s): PHC-32-2014 |
Documents, reports | 2019-10-10 |
Technical report and software for predictive modelling of drug response and detection of outlier samplesTechnical report and accompanying open-source software for predictive modelling of drug response and detection of outlier samples in lymphomas and leukaemias. Programme: H2020-EU.3.1.6. - Topic(s): PHC-32-2014 |
Other | 2019-10-10 |
Technical report on biomarkers analysed with transcriptome and metabolome data and technical report on novel pathomechanismsTechnical report on biomarkers analysed in >=100 samples with transcriptome and metabolome data; and technical report on novel pathomechanism(s) leading to impaired energy metabolism discovered by multi-omic patient data analysis Programme: H2020-EU.3.1.6. - Topic(s): PHC-32-2014 |
Documents, reports | 2019-10-10 |
Open-source software to estimate structured sparse models from multi-omics dataRelease of open-source software to estimate structured sparse models from multi-omics data. Programme: H2020-EU.3.1.6. - Topic(s): PHC-32-2014 |
Other | 2019-10-10 |
Website of InteractiveReports for select outcomes of WP2, 5-7.Make available InteractiveReports for select outcomes of WP2, 5-7 on website. Programme: H2020-EU.3.1.6. - Topic(s): PHC-32-2014 |
Websites, patent fillings, videos etc. | 2019-10-10 |
Technical report on disease classification based on multilevel data integrationTechnical report on disease classification based on multilevel data integration Programme: H2020-EU.3.1.6. - Topic(s): PHC-32-2014 |
Documents, reports | 2019-10-10 |
Open-source software CAUSAMET and BIOMARKOpen-source software CAUSAMET, to prioritize likely causal mutations from genotype, gene expression, metabolite and phenotypes; and BIOMARK, to detect biomarkers for disease progression from longitudinal blood sample transcriptome and metabolome profiling. Programme: H2020-EU.3.1.6. - Topic(s): PHC-32-2014 |
Other | 2019-10-10 |
Open-source software implementing InteractiveReports and catalogue of standard templates.Open-source software implementing InteractiveReports for displaying and scripting reproducible workflows; and a software catalogue of standard templates for informed decision-making. Programme: H2020-EU.3.1.6. - Topic(s): PHC-32-2014 |
Other | 2019-10-10 |
Open-source software that implements tumour diversity time series analysisOpen-source software that implements tumour diversity time series analysis Programme: H2020-EU.3.1.6. - Topic(s): PHC-32-2014 |
Other | 2019-10-10 |
Open-source software implementing end-to-end analysis and integrating the results from T1.1-1.5Open-source software implementing end-to-end analysis and integrating the results from T1.1-1.5, with documentation suitable for end-users. Programme: H2020-EU.3.1.6. - Topic(s): PHC-32-2014 |
Other | 2019-10-10 |
Technical report with evaluation of performance improvement or regression from D9.2Technical report with evaluation of performance improvement or regression from D9.1 Programme: H2020-EU.3.1.6. - Topic(s): PHC-32-2014 |
Documents, reports | 2019-10-10 |
SOUNDData and SOUNDHub public data resourcesThree or more SOUNDData public data resources as identified and developed in collaboration with WP leads; four or more SOUNDHub/AnnotationHub public data resources. Programme: H2020-EU.3.1.6. - Topic(s): PHC-32-2014 |
Websites, patent fillings, videos etc. | 2019-10-10 |
White paper description software design principles and open-source software implementation of SOUNDHub and SOUNDData.White paper describing software design principles and implementations; and open-source software implementation of SOUNDHub (annotation) amd SOUNDData (experiment data) services and clients, with specific development of controlled and federated data access. Programme: H2020-EU.3.1.6. - Topic(s): PHC-32-2014 |
Documents, reports | 2019-10-10 |
Open-source software to implement causal stability ranking for high-dimensional genotype dataOpen-source software that implements causal stability ranking for high-dimensional genotype data Programme: H2020-EU.3.1.6. - Topic(s): PHC-32-2014 |
Other | 2019-10-10 |
Open-source software CAUSEXPR, to prioritize likely causal mutations from genotype and gene expressionOpen-source software CAUSEXPR to prioritize likely causal mutations from genotype and gene expression Programme: H2020-EU.3.1.6. - Topic(s): PHC-32-2014 |
Other | 2019-10-10 |
Technical report on approaches to outlier detection in patient ’omics dataTechnical report on approaches to outlier detection in patient ’omics data Programme: H2020-EU.3.1.6. - Topic(s): PHC-32-2014 |
Documents, reports | 2019-10-10 |
Technical report with best practice guidelines and software packageTechnical report with definitions and best practice guidelines; and software package for simulation of experimental design and choice of validation sites in cancer genomics. Programme: H2020-EU.3.1.6. - Topic(s): PHC-32-2014 |
Documents, reports | 2019-10-10 |
Technical report describing the data structure and methods for operating on screening data, as described in T1.1Technical report describing the data structure and methods for operating on screening data, as described in T1.1 Programme: H2020-EU.3.1.6. - Topic(s): PHC-32-2014 |
Documents, reports | 2019-10-10 |
Technical report on new disease entities that were identified using novel statistical methodsTechnical report on new disease entities that were identified using novel statistical methods Programme: H2020-EU.3.1.6. - Topic(s): PHC-32-2014 |
Documents, reports | 2019-10-10 |
Software supporting the molecular tumour characterization pipeline and predicting perturbed pathwaysOpen-source software supporting the molecular tumour characterization pipeline and predicting perturbed pathways Programme: H2020-EU.3.1.6. - Topic(s): PHC-32-2014 |
Other | 2019-10-10 |
Open-source software with updated Renjin and code library of benchmarks and technical report describing most significant performance bottlenecksOpen-source software implementing an updated version of Renjin that supports the major Bioconductor packages; a code library of benchmarks; and a technical report describing the most significant performance bottlenecks. Programme: H2020-EU.3.1.6. - Topic(s): PHC-32-2014 |
Other | 2019-10-10 |
Open-source software for the standardized application of existing methods in liquid biopsy data analysisOpen-source software for the standardized application of existing methods in liquid biopsy data analysis, supported by online catalogue of existing methods and data resources. Programme: H2020-EU.3.1.6. - Topic(s): PHC-32-2014 |
Other | 2019-10-10 |
Software package for automated benchmarkingSoftware package for automated benchmarking Programme: H2020-EU.3.1.6. - Topic(s): PHC-32-2014 |
Other | 2019-10-10 |