PhenoMeNal project deliverables
The page lists 42 deliverables related to the research project "PhenoMeNal".
List of Deliverables
| title and desprition | type | last update |
|---|---|---|
D9.4 Updated report on existing software tools, workflows and analytical pipelines supported in PhenoMeNalUpdated report on existing software tools, workflows and analytical pipelines supported in PhenoMeNal Programme: H2020-EU.1.4.1.3. - Topic(s): EINFRA-1-2014 |
Documents, reports | 2019-10-07 |
D3.4.1 Two training workshops on omics data deposition, grid processing, dissemination and accessTwo training workshops on omics data deposition, grid processing, dissemination and access. Programme: H2020-EU.1.4.1.3. - Topic(s): EINFRA-1-2014 |
Other | 2019-10-07 |
D9.5.4 Updated Compute Virtual Machine Image 4Updated Compute Virtual Machine Image 4 Programme: H2020-EU.1.4.1.3. - Topic(s): EINFRA-1-2014 |
Other | 2019-10-07 |
D9.5.2 Updated Data Processing Virtual Machine Image 2Updated Data Processing Virtual Machine Image 2 Programme: H2020-EU.1.4.1.3. - Topic(s): EINFRA-1-2014 |
Other | 2019-10-07 |
D9.2.5 Portal Virtual Machine Image 5 that is capable of integrating other PhenoMeNal-VMIs (in local federated clouds) and make all functionality available via command-line, Web-APIs, and graphical user interfacesPortal Virtual Machine Image 5 that is capable of integrating other PhenoMeNal-VMIs (in local federated clouds) and make all functionality available via command-line, Web-APIs, and graphical user interfaces Programme: H2020-EU.1.4.1.3. - Topic(s): EINFRA-1-2014 |
Other | 2019-10-07 |
D4.3 Consensus agreement document from the working groupsConsensus agreement document from the working groups Programme: H2020-EU.1.4.1.3. - Topic(s): EINFRA-1-2014 |
Documents, reports | 2019-10-07 |
D9.5.3 Updated Services Virtual Machine Image 3Updated Services Virtual Machine Image 3 Programme: H2020-EU.1.4.1.3. - Topic(s): EINFRA-1-2014 |
Other | 2019-10-07 |
D6.5 Training and online tutorial for the general use of the PhenoMeNalTraining and online tutorial for the general use of the PhenoMeNal Programme: H2020-EU.1.4.1.3. - Topic(s): EINFRA-1-2014 |
Websites, patent fillings, videos etc. | 2019-10-07 |
D4.4 Report on State-of-The-Art and Perspectives in the fieldReport on State-of-The-Art and Perspectives in the field Programme: H2020-EU.1.4.1.3. - Topic(s): EINFRA-1-2014 |
Documents, reports | 2019-10-07 |
D9.5.1 Updated Preprocess Virtual Machine Image 1Updated Preprocess Virtual Machine Image 1 Programme: H2020-EU.1.4.1.3. - Topic(s): EINFRA-1-2014 |
Other | 2019-10-07 |
D8.4.2 Reference implementation guidelines and validation rulesReference implementation guidelines and validation rules Programme: H2020-EU.1.4.1.3. - Topic(s): EINFRA-1-2014 |
Other | 2019-10-07 |
D6.4 Participating Biobanks and repositories connected to the VRCParticipating Biobanks and repositories connected to the VRC Programme: H2020-EU.1.4.1.3. - Topic(s): EINFRA-1-2014 |
Other | 2019-10-07 |
D5.4 A federated cloud/grid system running on partners’ infrastructures for public data and tools. All services available. Operational installation at ICL clinical site for decision supportA federated cloud/grid system running on partners’ infrastructures for public data and tools. All services available. Operational installation at ICL clinical site for decision support Programme: H2020-EU.1.4.1.3. - Topic(s): EINFRA-1-2014 |
Other | 2019-10-07 |
D5.3 Operational grid/cloud allowing for combining data, tools, and compute VMIs. Most services available. Functional integration with EGI federated cloud/grid for compute resources. Demonstrated analysis on private/sensitive data in secure environmentOperational grid/cloud allowing for combining data, tools, and compute VMIs. Most services available. Functional integration with EGI federated cloud/grid for compute resources. Demonstrated analysis on private/sensitive data in secure environment Programme: H2020-EU.1.4.1.3. - Topic(s): EINFRA-1-2014 |
Other | 2019-10-07 |
D9.3 Report API access to PhenoMeNal ResourcesReport API access to PhenoMeNal Resources Programme: H2020-EU.1.4.1.3. - Topic(s): EINFRA-1-2014 |
Documents, reports | 2019-10-07 |
D3.4.2 Two training workshops on omics data deposition, grid processing, dissemination and accessTwo training workshops on omics data deposition, grid processing, dissemination and access. Programme: H2020-EU.1.4.1.3. - Topic(s): EINFRA-1-2014 |
Other | 2019-10-07 |
D1.5.3 Updated Data Management Plan (H2020 Open Research Data Pilot)Updated Data Management Plan Programme: H2020-EU.1.4.1.3. - Topic(s): EINFRA-1-2014 |
Open Research Data Pilot | 2019-10-07 |
D9.5.5 Updated Portal Virtual Machine Image 5Updated Portal Virtual Machine Image 5 Programme: H2020-EU.1.4.1.3. - Topic(s): EINFRA-1-2014 |
Other | 2019-10-07 |
D7.1.2 Workshop 2 on best practices in handling sensitive human data, taking into account National and Institutional legal policiesWorkshop 2 on best practices in handling sensitive human data, taking into account National and Institutional legal policies Programme: H2020-EU.1.4.1.3. - Topic(s): EINFRA-1-2014 |
Other | 2019-10-07 |
\"D3.3.2 Web-based Tutorial release 2 about \"\"Metabolomics Data Deposition and Analysis through PhenoMeNalâ€, in the form of video clips\"\"Web-based Tutorial release 2 about \"\"Metabolomics Data Deposition and Analysis through PhenoMeNalâ€, in the form of video clips\" Programme: H2020-EU.1.4.1.3. - Topic(s): EINFRA-1-2014 |
Websites, patent fillings, videos etc. | 2019-10-07 |
D8.4.1 Specifications for derived data matrices specifications and terminology for description of analysis and statistical resultsSpecifications for derived data matrices specifications and terminology for description of analysis and statistical results Programme: H2020-EU.1.4.1.3. - Topic(s): EINFRA-1-2014 |
Other | 2019-10-07 |
D8.2 Modularized ISA model and format: biospecimen centric schema, corresponding xml schemas, reference implementation guidelines and validation rulesModularized ISA model and format: biospecimen centric schema, corresponding xml schemas, reference implementation guidelines and validation rules Programme: H2020-EU.1.4.1.3. - Topic(s): EINFRA-1-2014 |
Other | 2019-10-07 |
D9.2.1 PhenoMeNal-Preprocess Virtual Machine Image 1 to enable data producers to locally process raw data into standard formats supported in PhenoMeNalPhenoMeNal-Preprocess Virtual Machine Image 1 to enable data producers to locally process raw data into standard formats supported in PhenoMeNal Programme: H2020-EU.1.4.1.3. - Topic(s): EINFRA-1-2014 |
Other | 2019-10-07 |
D7.1.1 Workshop 1 on best practices in handling sensitive human data, taking into account National and Institutional legal policiesWorkshop 1 on best practices in handling sensitive human data, taking into account National and Institutional legal policies Programme: H2020-EU.1.4.1.3. - Topic(s): EINFRA-1-2014 |
Other | 2019-10-07 |
D8.3 nmrML, mzML data exchange formats and associated terminologies for instrument raw, with reference implementation guidelines and validation rulesnmrML, mzML data exchange formats and associated terminologies for instrument raw, with reference implementation guidelines and validation rules Programme: H2020-EU.1.4.1.3. - Topic(s): EINFRA-1-2014 |
Other | 2019-10-07 |
D7.2 Report on policies and procedures for sensitive human data managementReport on policies and procedures for sensitive human data management Programme: H2020-EU.1.4.1.3. - Topic(s): EINFRA-1-2014 |
Documents, reports | 2019-10-07 |
D5.2 A beta-version of PhenoMeNal integration VMI capable of proof- of-concept integration with other VMIs. Initial services online supporting PhenoMeNal data standardsA beta-version of PhenoMeNal integration VMI capable of proof- of-concept integration with other VMIs. Initial services online supporting PhenoMeNal data standards Programme: H2020-EU.1.4.1.3. - Topic(s): EINFRA-1-2014 |
Other | 2019-10-07 |
D9.2.4 Compute Virtual Machine Image 4 to enable standardised compute capabilities for all the grid supplying partnersCompute Virtual Machine Image 4 to enable standardised compute capabilities for all the grid supplying partners Programme: H2020-EU.1.4.1.3. - Topic(s): EINFRA-1-2014 |
Other | 2019-10-07 |
D9.2.3 Services Virtual Machine Image 3 to facilitate the PhenoMeNal toolsets and pipelines, both locally and in the gridServices Virtual Machine Image 3 to facilitate the PhenoMeNal toolsets and pipelines, both locally and in the grid Programme: H2020-EU.1.4.1.3. - Topic(s): EINFRA-1-2014 |
Other | 2019-10-07 |
D9.2.2 PhenoMeNal-Data Virtual Machine Image 2 to enable sharing and dissemination of standardised and processed omics data to participating online repositories, like MetaboLightsPhenoMeNal-Data Virtual Machine Image 2 to enable sharing and dissemination of standardised and processed omics data to participating online repositories, like MetaboLights Programme: H2020-EU.1.4.1.3. - Topic(s): EINFRA-1-2014 |
Other | 2019-10-07 |
D8.4 Signal processing and analysis data exchange formatSignal processing and analysis data exchange format Programme: H2020-EU.1.4.1.3. - Topic(s): EINFRA-1-2014 |
Other | 2019-10-07 |
D7.4 Process to extract maximum information from sensitive datasets with minimum compromise, in collaboration with BBMRI and BioMedBridgesWorkflows to extract maximum information from sensitive datasets with minimum compromise, in collaboration with BBMRI and BioMedBridges Programme: H2020-EU.1.4.1.3. - Topic(s): EINFRA-1-2014 |
Other | 2019-10-07 |
D5.1 Build System with continuous integration, providing development snapshots of PhenoMeNal Virtual Machine ImagesBuild System with continuous integration, providing development snapshots of PhenoMeNal Virtual Machine Images Programme: H2020-EU.1.4.1.3. - Topic(s): EINFRA-1-2014 |
Other | 2019-10-07 |
D1.5.2 Updated Data Management Plan (H2020 Open Research Data Pilot)Updated Data Management Plan Programme: H2020-EU.1.4.1.3. - Topic(s): EINFRA-1-2014 |
Open Research Data Pilot | 2019-10-07 |
D4.2 Report describing the activity and output of working groupsEstablish and convene working groups involving the PhenoMeNal consortium as well as participants in other biomedical infrastructure and research projects. Report describing the activity and output of working groups. Programme: H2020-EU.1.4.1.3. - Topic(s): EINFRA-1-2014 |
Documents, reports | 2019-10-07 |
D4.1Report on requirements for relevant research centers producing and/or consuming metabolomics data with respect to computational aspects, data storage, and infrastructural needsReporting on requirements expressed/formalised by relevant biomedical infrastructures, both physical and electronic, with regard to data storage, retrieval, exchange, management and analysis. Programme: H2020-EU.1.4.1.3. - Topic(s): EINFRA-1-2014 |
Documents, reports | 2019-10-07 |
\"D3.3.1 Web-based Tutorial release 1 about \"\"Metabolomics Data Deposition and Analysis through PhenoMeNalâ€, in the form of video clips\"\"Web-based Tutorial release 1 about \"\"Metabolomics Data Deposition and Analysis through PhenoMeNalâ€, in the form of video clips\" Programme: H2020-EU.1.4.1.3. - Topic(s): EINFRA-1-2014 |
Websites, patent fillings, videos etc. | 2019-10-07 |
D8.1 Report on community standards for reporting, access and integrity supported in the PhenoMeNal grid; to be disseminated in a dedicated BioSharing page and via the project websiteReport on community standards for reporting, access and integrity supported in the PhenoMeNal grid; to be disseminated in a dedicated BioSharing page and via the project website Programme: H2020-EU.1.4.1.3. - Topic(s): EINFRA-1-2014 |
Documents, reports | 2019-10-07 |
D9.1 Report on existing software tools, workflows and analytical pipelines initially supported in the PhenoMeNal gridReport on existing software tools, workflows and analytical pipelines initially supported in the PhenoMeNal grid Programme: H2020-EU.1.4.1.3. - Topic(s): EINFRA-1-2014 |
Documents, reports | 2019-10-07 |
D6.3 Online user feedback formAn Online feedback form will be available for user requests and initiate direct communication with interested parties. Programme: H2020-EU.1.4.1.3. - Topic(s): EINFRA-1-2014 |
Websites, patent fillings, videos etc. | 2019-10-07 |
D6.2 PhenoMeNal VRC (static) portal publicly availablePhenoMeNal VRC (static) portal publicly available Programme: H2020-EU.1.4.1.3. - Topic(s): EINFRA-1-2014 |
Websites, patent fillings, videos etc. | 2019-10-07 |
D1.5.1 Data Management Plan (H2020 Open Research Data Pilot)Develop, and update, the Data Management Plan Programme: H2020-EU.1.4.1.3. - Topic(s): EINFRA-1-2014 |
Open Research Data Pilot | 2019-10-07 |