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CRYPTRANS

Characterization of newly discovered but poorly understood fungal-driven trophic processes in freshwater lake ecosystems by metatranscriptomic

Total Cost €

EC-Contrib. €

Partnership

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Outcomes and
results

CRYPTRANS project word cloud

Explore the words cloud of the CRYPTRANS project. It provides you a very rough idea of what is the project "CRYPTRANS" about.

push sequencing ultimate brings functions predominantly biological systematics rna stable roles forefront poorly settings understand fungi normally ecosystems organisms combination pursuit science habitats largely recent pressure implications redefine generation world questions trophic ecological taxonomy pools diversity capture group communities sequence cryptomycota metatranscriptomics levels parts host fungal position sites datasets anthropogenic organic dna boundaries readily metagenomics nutrients deepest disciplines phyla intent accessible services convert remote functional gradients chytridiomycota overarching expertise device substantial thought sampling shown there vibrant drive freshwater locations tech progressive he ecology team unexplored jointly abound identification molecular large

Project "CRYPTRANS" data sheet

The following table provides information about the project.

Coordinator	GOETEBORGS UNIVERSITET Organization address address: VASAPARKEN city: GOETEBORG postcode: 405 30 website: www.gu.se contact info title: n.a. name: n.a. surname: n.a. function: n.a. email: n.a. telephone: n.a. fax: n.a.
Coordinator Country	Sweden [SE]
Project website	http://tinyurl.com/n4bc9sj
Total cost	185˙857 €
EC max contribution	185˙857 € (100%)
Programme	1. H2020-EU.1.3.2. (Nurturing excellence by means of cross-border and cross-sector mobility)
Code Call	H2020-MSCA-IF-2014
Funding Scheme	MSCA-IF-EF-ST
Starting year	2015
Duration (year-month-day)	from 2015-07-01 to 2017-06-30

Partnership

Take a look of project's partnership.

#	participants	country	role	EC contrib. [€]
1	GOETEBORGS UNIVERSITET GOETEBORGS UNIVERSITET Organization address address: VASAPARKEN city: GOETEBORG postcode: 405 30 website: www.gu.se contact info title: n.a. name: n.a. surname: n.a. function: n.a. email: n.a. telephone: n.a. fax: n.a.	SE (GOETEBORG)	coordinator	185˙857.00

Map

Project objective

Recent research has shown that freshwater systems, and particularly their deepest parts, abound with fungi. These fungi (predominantly in the poorly understood phyla Chytridiomycota and Cryptomycota) are largely new to science and are thought to be involved in ecological processes that convert organic matter into nutrients readily accessible to organisms at higher trophic levels. Given the ever-increasing anthropogenic pressure on freshwater systems, we need to understand these processes and the organisms involved in substantial detail. The present project will characterize these new fungi and detail the processes and ecological services they drive through next-generation sequencing of DNA (metagenomics) and RNA (metatranscriptomics) pools in freshwater depth gradients. The overarching questions are: (1) What fungi are down there? (2) What are their functions and roles? and (3) What are the implications for the study of fungi, freshwater ecosystems, and ecology at large? This combination of taxonomy/systematics and ecological/functional research questions applied to these most unexplored and remote ecological settings represents a novel approach on freshwater systems and biological diversity - one with the potential to redefine the pursuit of biological research questions across biological disciplines and beyond habitats normally targeted. The applicant has developed a new high-tech sampling device capable of stable RNA/DNA capture down to 100 m depth, and he brings substantial expertise on functional and ecological assessment of metagenomics sequence datasets to the project. The host research group is the world authority on molecular identification of fungi and comparison of fungal communities across sites and locations. Jointly this team is in a position to push the boundaries of biological knowledge, with the ultimate intent to allow the applicant to establish a progressive, vibrant research group at the very forefront of freshwater systems research in Europe.

Publications

List of publications.
year	authors and title	journal	last update
2017	R. Henrik Nilsson, Marisol SÃ¡nchez-GarcÃa, Martin K. Ryberg, Kessy Abarenkov, Christian Wurzbacher, Erik Kristiansson Read quality-based trimming of the distal ends of public fungal DNA sequences is nowhere near satisfactory published pages: 13-24, ISSN: 1314-4049, DOI: 10.3897/mycokeys.26.14591	MycoKeys 26	2019-07-24

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The information about "CRYPTRANS" are provided by the European Opendata Portal: CORDIS opendata.