ELIXIR-EXCELERATE project deliverables
The page lists 55 deliverables related to the research project "ELIXIR-EXCELERATE".
List of Deliverables
| title and desprition | type | last update |
|---|---|---|
D6.1 Specific marine databases made publicly availableSpecific marine databases made publicly available (Task 6.2) Programme: H2020-EU.1.4.1.1. - Topic(s): INFRADEV-3-2015 |
Documents, reports | 2020-04-23 |
D6.2 Report on comprehensive metagenomic data standards environmentReport on comprehensive metagenomic data standards environment (Task 6.1) Programme: H2020-EU.1.4.1.1. - Topic(s): INFRADEV-3-2015 |
Documents, reports | 2020-04-23 |
D8.4 Report on the ELIXIR workshop organized with the rare-disease communitiesReport on the ELIXIR workshop organized with the rare-disease communities - year 2 (Task 8.3). Programme: H2020-EU.1.4.1.1. - Topic(s): INFRADEV-3-2015 |
Documents, reports | 2020-04-23 |
D2.1 Creation of a database warehouse infrastructure for storing and organizing data for online performance assessment experimentsCreation of a database warehouse infrastructure for storing and organizing data for online performance assessment experiments (Tasks 2.2, 2.3, 2.4) Programme: H2020-EU.1.4.1.1. - Topic(s): INFRADEV-3-2015 |
Documents, reports | 2020-04-23 |
D13.2 Report on ELIXIR’s Communication StrategyReport on ELIXIR’s Communication Strategy (Task 13.1). Programme: H2020-EU.1.4.1.1. - Topic(s): INFRADEV-3-2015 |
Documents, reports | 2020-04-23 |
D9.4 Report on implementation of cloud access and secure user and data managementReport on implementation of cloud access and secure user and data management Programme: H2020-EU.1.4.1.1. - Topic(s): INFRADEV-3-2015 |
Documents, reports | 2020-04-23 |
D1.6 Workbench integration enabler: implementation & evaluation of impactWorkbench integration enabler: implementation & evaluation of impact (Task 1.3) Programme: H2020-EU.1.4.1.1. - Topic(s): INFRADEV-3-2015 |
Documents, reports | 2020-04-23 |
D4.1 ELIXIR Technical Services RoadmapELIXIR Technical Services Roadmap: Incorporates the technical requirements coming from the Use Cases, details of the service offerings coming from the ELIXIR Nodes and the public e-Infrastructures, and provides a roadmap detailing when new services will appear within the ELIXIR Technical Services registry and the work being undertaken by the service providers to meet ELIXIR’s requirements (Task 4.1, task 4.2, task 4.3). Programme: H2020-EU.1.4.1.1. - Topic(s): INFRADEV-3-2015 |
Documents, reports | 2020-04-23 |
D7.2 Phenotypic data exposed through integrating API by all participantsPhenotypic data exposed through integrating API by all participants (Task 7.4). Programme: H2020-EU.1.4.1.1. - Topic(s): INFRADEV-3-2015 |
Documents, reports | 2020-04-23 |
D2.2 A report on the coordination with WP1 on the incorporation of monitoring statistics and benchmarking results in registry releasesA report on the coordination with WP1 on the incorporation of monitoring statistics and benchmarking results in registry releases (Task 2.4). Programme: H2020-EU.1.4.1.1. - Topic(s): INFRADEV-3-2015 |
Documents, reports | 2020-04-23 |
D9.2 Report on implementation of submissions interface and APIReport on implementation of submissions interface and API (Task 9.1). Programme: H2020-EU.1.4.1.1. - Topic(s): INFRADEV-3-2015 |
Documents, reports | 2020-04-23 |
D1.5 Incorporation of monitoring statistics and benchmarking results in registry releasesIncorporation of monitoring statistics and benchmarking results in registry releases (Task 1.2) Programme: H2020-EU.1.4.1.1. - Topic(s): INFRADEV-3-2015 |
Documents, reports | 2020-04-23 |
D9.5 Report on implementation of ELSI and policy consideration for controlled access dataReport on implementation of ELSI and policy consideration for controlled access data Programme: H2020-EU.1.4.1.1. - Topic(s): INFRADEV-3-2015 |
Documents, reports | 2020-04-23 |
D1.2 Registry release with comprehensive coverage of ELIXIR Node resources, including resource data format curation and analysisRegistry release with comprehensive coverage of ELIXIR Node resources, including resource data format curation and analysis (Task 1.1) - year 2 Programme: H2020-EU.1.4.1.1. - Topic(s): INFRADEV-3-2015 |
Documents, reports | 2020-04-23 |
D11.1 Deliver the identified evaluation systems and good practice guidelines for training. Deliver a TeSS platform and identify e-learning solutionsDeliver the identified evaluation systems and good practice guidelines for training. Deliver a TeSS platform and identify e-learning solutions (Task 11.1) Programme: H2020-EU.1.4.1.1. - Topic(s): INFRADEV-3-2015 |
Documents, reports | 2020-04-23 |
D10.4 ELIXIR Advanced workshops on genome annotationELIXIR Advanced workshops on genome annotation - Month 22 (Task 10.3). Programme: H2020-EU.1.4.1.1. - Topic(s): INFRADEV-3-2015 |
Documents, reports | 2020-04-23 |
D7.1 Datasets annotated for at least 1 woody plant, cereal and solanaceous species; genotype, phenotype and sample meta data submitted to appropriate public archivesDatasets annotated for at least 1 woody plant, cereal and solanaceous species; genotype, phenotype and sample meta data submitted to appropriate public archives (Task 7.1, task 7.2 and task 7.3). Programme: H2020-EU.1.4.1.1. - Topic(s): INFRADEV-3-2015 |
Documents, reports | 2020-04-23 |
D13.1 Release of a live ELIXIR Communication Strategy, including annual updates thereafterRelease of a live ELIXIR Communication Strategy, including annual updates thereafter - Month 6 (Task 13.1). Programme: H2020-EU.1.4.1.1. - Topic(s): INFRADEV-3-2015 |
Documents, reports | 2020-04-23 |
D11.2 Report on the training needs identified across the ELIXIR communityReport on the training needs identified across the ELIXIR community (Task 11.1). Programme: H2020-EU.1.4.1.1. - Topic(s): INFRADEV-3-2015 |
Documents, reports | 2020-04-23 |
D8.3 Report on the ELIXIR workshop organized with the rare-disease communitiesReport on the ELIXIR workshop organized with the rare-disease communities - year 1 (Task 8.3). Programme: H2020-EU.1.4.1.1. - Topic(s): INFRADEV-3-2015 |
Documents, reports | 2020-04-23 |
D3.1 List of metrics/quality criteria measuring the scientific impact, service usage, service delivery, and eligibility for “ELIXIR Named Resource†and “ELIXIR Core Resource†labels, to allow construction and extension of the ELIXIR Resource portfolioList of metrics/quality criteria measuring the scientific impact, service usage, service delivery, and eligibility for “ELIXIR Named Resource†and “ELIXIR Core Resource†labels, to allow construction and extension of the ELIXIR Resource portfolio (Task 3.1). Programme: H2020-EU.1.4.1.1. - Topic(s): INFRADEV-3-2015 |
Documents, reports | 2020-04-23 |
D9.3 Report on implementation of value-added user applications and cohort integrationReport on implementation of value-added user applications and cohort integration Programme: H2020-EU.1.4.1.1. - Topic(s): INFRADEV-3-2015 |
Documents, reports | 2020-04-23 |
D8.1 Portfolio of ELIXIR data resources and tools for the rare diseases communitiesPortfolio of ELIXIR data resources and tools for the rare diseases communities (Task 8.1). Programme: H2020-EU.1.4.1.1. - Topic(s): INFRADEV-3-2015 |
Documents, reports | 2020-04-23 |
D8.2 Documentation of the tools for the data manipulation and standard conversions in the rare-disease fieldDocumentation of the tools for the data manipulation and standard conversions in the rare-disease field (Task 8.2). Programme: H2020-EU.1.4.1.1. - Topic(s): INFRADEV-3-2015 |
Documents, reports | 2020-04-23 |
D13.3 Report on ELIXIR’s International StrategyReport on ELIXIR’s International Strategy (Task 13.4). Programme: H2020-EU.1.4.1.1. - Topic(s): INFRADEV-3-2015 |
Documents, reports | 2020-04-23 |
D2.3 A report on the features and nature of novel data which are needed within online benchmarking experiments in different subareasA report on the features and nature of novel data which are needed within online benchmarking experiments in different subareas (Task 2.3, task 2.4). Programme: H2020-EU.1.4.1.1. - Topic(s): INFRADEV-3-2015 |
Documents, reports | 2020-04-23 |
D1.1 Registry release with comprehensive coverage of ELIXIR Node resources, including resource data format curation and analysisRegistry release with comprehensive coverage of ELIXIR Node resources, including resource data format curation and analysis (Task 1.1) - year 1 Programme: H2020-EU.1.4.1.1. - Topic(s): INFRADEV-3-2015 |
Documents, reports | 2020-04-23 |
D12.2 ELIXIR Handbook of OperationsELIXIR Handbook of Operations (Task 12.1). Programme: H2020-EU.1.4.1.1. - Topic(s): INFRADEV-3-2015 |
Documents, reports | 2020-04-23 |
D10.3 ELIXIR Advanced workshops on genome annotationELIXIR Advanced workshops on genome annotation - Month 4 (Task 10.3). Programme: H2020-EU.1.4.1.1. - Topic(s): INFRADEV-3-2015 |
Documents, reports | 2020-04-23 |
D10.5 A Node report on regional priorities and channels to use. Available to all relevant partners in the Node network in that countryA Node report on regional priorities and channels to use. Available to all relevant partners in the Node network in that country Programme: H2020-EU.1.4.1.1. - Topic(s): INFRADEV-3-2015 |
Documents, reports | 2020-04-23 |
D9.1 Requirements analysis documentRequirements analysis document Programme: H2020-EU.1.4.1.1. - Topic(s): INFRADEV-3-2015 |
Documents, reports | 2020-04-23 |
D3.2 A report describing the semantically enriched Europe PMC that links literature to ELIXIR Core resource data, exemplified by GeneRif annotationsA report describing the semantically enriched Europe PMC that links literature to ELIXIR Core resource data, exemplified by GeneRif annotations (Task 3.3) Programme: H2020-EU.1.4.1.1. - Topic(s): INFRADEV-3-2015 |
Documents, reports | 2020-04-23 |
D5.1 Interoperability Implementation RegulationsInteroperability Implementation Regulations. A set of standards, rules, controlled vocabularies, authorised unique identifiers and interoperable service APIs for the data repositories and biological knowledge bases agreed and implemented in the field with WP6 to 9, and WP3; resources registered in BioSharing; BioCatalogue and BioRegistry (WP1); ontologies accessible via Ontology Lookup Services (Task 5.1) Programme: H2020-EU.1.4.1.1. - Topic(s): INFRADEV-3-2015 |
Documents, reports | 2020-04-23 |
D4.2 Updated ELIXIR Technical Services RoadmapUpdated ELIXIR Technical Services Roadmap: Incorporates the technical requirements coming from the Use Cases, details of the service offerings coming from the ELIXIR Nodes and the public e-Infrastructures, and provides a roadmap detailing when new services will appear within the ELIXIR Technical Services portfolio and the work being undertaken by the service providers to meet ELIXIR’s requirements (Task 4.1, task 4.2, task 4.3). Programme: H2020-EU.1.4.1.1. - Topic(s): INFRADEV-3-2015 |
Documents, reports | 2020-04-23 |
D10.2 Blueprint on how to set up an ELIXIR data NodeBlueprint on how to set up an ELIXIR data Node (Task 10.2). Programme: H2020-EU.1.4.1.1. - Topic(s): INFRADEV-3-2015 |
Documents, reports | 2020-02-12 |
D7.3 Implementation of BRAPI (Plant Breeding API) at all participating nodesImplementation of BRAPI (Plant Breeding API) at all participating nodes Programme: H2020-EU.1.4.1.1. - Topic(s): INFRADEV-3-2015 |
Documents, reports | 2020-02-12 |
D5.3 Bring Your Own DataBring Your Own Data 8 delivered workshops and established roll-out programme across WP10 Data Node capability network; materials deposited on WP11 TeSS (Task 5.3) Programme: H2020-EU.1.4.1.1. - Topic(s): INFRADEV-3-2015 |
Documents, reports | 2020-02-12 |
D6.5 Improvement and Application of Eukaryotic GeneWe will release the first set of the reference eukaryotic gene catalog including 292 species of the MMETSP project and 78 species of Roscoff Culture Collection. Thereafter, we will investigate the production of combined assemblies (assemblies built from a unique taxa, but under a range of RNAseq conditions) from MMETSP dataset. We plan to produce 119 new eukaryotic assemblies. Additionally, works we will identify (probable) contamination and/or mixed species populations within eukaryotic assemblies, based on functional annotation (produced by EBI pipeline) and contigs binning. (Rob Finn, EBI and Nils Peder Willassen, UiT). Programme: H2020-EU.1.4.1.1. - Topic(s): INFRADEV-3-2015 |
Documents, reports | 2020-02-12 |
D1.8 Matchmaking Service: implementation & evaluation of impactMatchmaking Service: implementation & evaluation of impact Programme: H2020-EU.1.4.1.1. - Topic(s): INFRADEV-3-2015 |
Documents, reports | 2020-02-12 |
D13.4 Report on the impact of the Innovation and SME programme on industry usersReport on the impact of the Innovation and SME programme on industry users (Task 13.2). Programme: H2020-EU.1.4.1.1. - Topic(s): INFRADEV-3-2015 |
Documents, reports | 2020-02-12 |
D10.1 Communities of†Good Practice†and Protocols of TransferCommunities of†Good Practice†and Protocols of Transfer (Task 10.1). Programme: H2020-EU.1.4.1.1. - Topic(s): INFRADEV-3-2015 |
Documents, reports | 2020-02-12 |
D4.4 ELIXIR Technical Services documentELIXIR Technical Services document: Describes the ELIXIR Technical Services being offered through the cooperating service providers (ELIXIR Nodes and public e-infrastructures) (Task 4.1, task 4.2, task 4.3). Programme: H2020-EU.1.4.1.1. - Topic(s): INFRADEV-3-2015 |
Documents, reports | 2020-02-12 |
D8.7 Options for sustainability of RD-Connect within the scope of ELIXIROptions for sustainability of RD-Connect within the scope of ELIXIR Programme: H2020-EU.1.4.1.1. - Topic(s): INFRADEV-3-2015 |
Documents, reports | 2020-02-12 |
D8.6 Documentation on adequate quality reporting standards for genomics datasetsDocumentation on adequate quality reporting standards for genomics datasets Programme: H2020-EU.1.4.1.1. - Topic(s): INFRADEV-3-2015 |
Documents, reports | 2020-02-12 |
D1.3 Registry release with comprehensive coverage of ELIXIR Node resources, including resource data format curation and analysisRegistry release with comprehensive coverage of ELIXIR Node resources, including resource data format curation and analysis (Task 1.1) - year 3 Programme: H2020-EU.1.4.1.1. - Topic(s): INFRADEV-3-2015 |
Documents, reports | 2020-02-12 |
D3.3 Report describing ELIXIR-wide systems for the computer-assisted collection and delivery of harmonised metrics and quality criteria from multiple ELIXIR resources and collation of these at the ELIXIR HubReport describing ELIXIR-wide systems for the computer-assisted collection and delivery of harmonised metrics and quality criteria from multiple ELIXIR resources and collation of these at the ELIXIR Hub (Task 3.2). Programme: H2020-EU.1.4.1.1. - Topic(s): INFRADEV-3-2015 |
Documents, reports | 2020-02-12 |
D12.4 Updated long- term strategy for the sustainability of data managementUpdated long- term strategy for the sustainability of data management Programme: H2020-EU.1.4.1.1. - Topic(s): INFRADEV-3-2015 |
Documents, reports | 2020-02-12 |
D1.7 Description of the registry user helpdesk & impact on user support via community forumsDescription of the registry user helpdesk & impact on user support via community forums Programme: H2020-EU.1.4.1.1. - Topic(s): INFRADEV-3-2015 |
Documents, reports | 2020-02-12 |
D8.5 Report on the ELIXIR workshops organised with the rare-disease communitiesReport on the ELIXIR workshops organised with the rare-disease communities Programme: H2020-EU.1.4.1.1. - Topic(s): INFRADEV-3-2015 |
Documents, reports | 2020-02-12 |
D1.4 Registry release with comprehensive coverage of ELIXIR Node resources, including resource data format curation and analysisRegistry release with comprehensive coverage of ELIXIR Node resources, including resource data format curation and analysis (Task 1.1) - year 4 Programme: H2020-EU.1.4.1.1. - Topic(s): INFRADEV-3-2015 |
Documents, reports | 2020-02-12 |
D4.3 ELIXIR Technical Services RoadmapELIXIR Technical Services Roadmap: Incorporates the technical requirements coming from the Use Cases, details of the service offerings coming from the ELIXIR Nodes and the public e-Infrastructures, and provides a roadmap detailing when new services will appear within the ELIXIR Technical Services portfolio and the work being undertaken by the service providers to meet ELIXIR’s requirements (Task 4.1, task 4.2, task 4.3). Programme: H2020-EU.1.4.1.1. - Topic(s): INFRADEV-3-2015 |
Documents, reports | 2020-02-12 |
D11.3 Report on training provided across the ELIXIR communityReport on training provided across the ELIXIR community (Task 11.2). Programme: H2020-EU.1.4.1.1. - Topic(s): INFRADEV-3-2015 |
Documents, reports | 2020-02-12 |
D6.3 Report describing a set of tools, pipelines and search engine for interrogation of marine metagenomic dataReport describing a set of tools, pipelines and search engine for interrogation of marine metagenomic data (Task 6.3 and task 6.4) Programme: H2020-EU.1.4.1.1. - Topic(s): INFRADEV-3-2015 |
Documents, reports | 2020-02-12 |
D6.4 Report on assessment criteria and standardisation of metagenome assembled genomes (MAGs) from Marine samplesThe increased depth of sequences and improved algorithms have seen an increase in the number of marine metagenomics datasets that can be assembled. However, no metrics are in place to indicate what constitutes a good assembly. Furthermore, the community is producing more and more MAGs from these assemblies. Papers by Parks et al and Bowers et al have provided a range on different ways of assessing the quality of a MAG, with the former also beginning to outline a set of standards that should be adopted. We will assess these standards against MAGs produced from Marine samples (from both our own and publicly deposited MAGs). We will report on the criteria that we believe should be achieved from inclusion in Marine data resources, such as EBI metagenomics or the MAR databases. (Rob Finn, EBI and Nils Peder Willassen, UiT). Programme: H2020-EU.1.4.1.1. - Topic(s): INFRADEV-3-2015 |
Documents, reports | 2020-02-12 |
D2.4 Final report on the impact of ELIXIR infrastructure for hosting scientific benchmarking and technical monitoring resultsFinal report on the impact of ELIXIR infrastructure for hosting scientific benchmarking and technical monitoring results Programme: H2020-EU.1.4.1.1. - Topic(s): INFRADEV-3-2015 |
Documents, reports | 2020-02-12 |