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ELIXIR-EXCELERATE

ELIXIR-EXCELERATE: Fast-track ELIXIR implementation and drive early user exploitation across the life-sciences.

Total Cost €

EC-Contrib. €

Partnership

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Outcomes and
results

ELIXIR-EXCELERATE project word cloud

Explore the words cloud of the ELIXIR-EXCELERATE project. It provides you a very rough idea of what is the project "ELIXIR-EXCELERATE" about.

interoperable named provides esfri transformation bioinformatics industries globe life undergoing distributed enabled january connects precipitous heterogeneous national scientists reactions generate track grow sustainable formally biology infrastructure experimental usable infrastructures stewardship competence world amount re industry laboratories biological complete data security accessible local interoperability 2014 volumes standards fair millions comprising findable coordinate scalable elixir drop organisation capacity modern ebi unprecedented embl excelerate imagine coordinated entity exchange throughput recognising academia foundation molecules fast training service science sciences competitiveness generating datasets efforts council storage tools

Project "ELIXIR-EXCELERATE" data sheet

The following table provides information about the project.

Coordinator	EUROPEAN MOLECULAR BIOLOGY LABORATORY Organization address address: Meyerhofstrasse 1 city: HEIDELBERG postcode: 69117 website: http://www.embl.de contact info title: n.a. name: n.a. surname: n.a. function: n.a. email: n.a. telephone: n.a. fax: n.a.
Coordinator Country	Germany [DE]
Project website	https://www.elixir-europe.org/excelerate
Total cost	19˙051˙482 €
EC max contribution	19˙051˙482 € (100%)
Programme	1. H2020-EU.1.4.1.1. (Developing new world-class research infrastructures)
Code Call	H2020-INFRADEV-1-2015-1
Funding Scheme	RIA
Starting year	2015
Duration (year-month-day)	from 2015-09-01 to 2019-08-31

Partnership

Take a look of project's partnership.

#	participants	country	role	EC contrib. [€]
1	EUROPEAN MOLECULAR BIOLOGY LABORATORY EUROPEAN MOLECULAR BIOLOGY LABORATORY Organization address address: Meyerhofstrasse 1 city: HEIDELBERG postcode: 69117 website: http://www.embl.de contact info title: n.a. name: n.a. surname: n.a. function: n.a. email: n.a. telephone: n.a. fax: n.a.	DE (HEIDELBERG)	coordinator	5˙236˙621.00
2	SIB INSTITUT SUISSE DE BIOINFORMATIQUE SIB INSTITUT SUISSE DE BIOINFORMATIQUE Organization address address: RUE MICHEL SERVET 1 CMU city: GENEVE postcode: 1206 website: www.isb-sib.ch contact info title: n.a. name: n.a. surname: n.a. function: n.a. email: n.a. telephone: n.a. fax: n.a.	CH (GENEVE)	participant	1˙456˙270.00
3	STICHTING DTL PROJECTS STICHTING DTL PROJECTS Organization address address: JAARBEURSPLEIN 6, 6TH FLOOR BEATRIXGEBOUW JAARBEURS city: UTRECHT postcode: 3521 AL website: www.nbic.nl contact info title: n.a. name: n.a. surname: n.a. function: n.a. email: n.a. telephone: n.a. fax: n.a.	NL (UTRECHT)	participant	1˙295˙060.00
4	DANMARKS TEKNISKE UNIVERSITET DANMARKS TEKNISKE UNIVERSITET Organization address address: ANKER ENGELUNDSVEJ 1 BYGNING 101 A city: KGS LYNGBY postcode: 2800 website: www.dtu.dk contact info title: n.a. name: n.a. surname: n.a. function: n.a. email: n.a. telephone: n.a. fax: n.a.	DK (KGS LYNGBY)	participant	1˙111˙250.00
5	CSC-TIETEEN TIETOTEKNIIKAN KESKUS OY CSC-TIETEEN TIETOTEKNIIKAN KESKUS OY Organization address address: Keilaranta 14 city: ESPOO postcode: 2101 website: www.csc.fi contact info title: n.a. name: n.a. surname: n.a. function: n.a. email: n.a. telephone: n.a. fax: n.a.	FI (ESPOO)	participant	894˙997.00
6	UPPSALA UNIVERSITET UPPSALA UNIVERSITET Organization address address: VON KRAEMERS ALLE 4 city: UPPSALA postcode: 751 05 website: www.uu.se contact info title: n.a. name: n.a. surname: n.a. function: n.a. email: n.a. telephone: n.a. fax: n.a.	SE (UPPSALA)	participant	785˙550.00
7	CENTRE NATIONAL DE LA RECHERCHE SCIENTIFIQUE CNRS CENTRE NATIONAL DE LA RECHERCHE SCIENTIFIQUE CNRS Organization address address: RUE MICHEL ANGE 3 city: PARIS postcode: 75794 website: www.cnrs.fr contact info title: n.a. name: n.a. surname: n.a. function: n.a. email: n.a. telephone: n.a. fax: n.a.	FR (PARIS)	participant	635˙000.00
8	BARCELONA SUPERCOMPUTING CENTER - CENTRO NACIONAL DE SUPERCOMPUTACION BARCELONA SUPERCOMPUTING CENTER - CENTRO NACIONAL DE SUPERCOMPUTACION Organization address address: Calle Jordi Girona 31 city: BARCELONA postcode: 8034 website: www.bsc.es contact info title: n.a. name: n.a. surname: n.a. function: n.a. email: n.a. telephone: n.a. fax: n.a.	ES (BARCELONA)	participant	558˙477.00
9	TARTU ULIKOOL TARTU ULIKOOL Organization address address: ULIKOOLI 18 city: TARTU postcode: 51005 website: www.ut.ee contact info title: n.a. name: n.a. surname: n.a. function: n.a. email: n.a. telephone: n.a. fax: n.a.	EE (TARTU)	participant	557˙502.00
10	THE UNIVERSITY OF MANCHESTER THE UNIVERSITY OF MANCHESTER Organization address address: OXFORD ROAD city: MANCHESTER postcode: M13 9PL website: www.manchester.ac.uk contact info title: n.a. name: n.a. surname: n.a. function: n.a. email: n.a. telephone: n.a. fax: n.a.	UK (MANCHESTER)	participant	528˙281.00
11	Masarykova univerzita Masarykova univerzita Organization address address: Zerotinovo namesti 9 city: BRNO STRED postcode: 60177 website: http://www.muni.cz contact info title: n.a. name: n.a. surname: n.a. function: n.a. email: n.a. telephone: n.a. fax: n.a.	CZ (BRNO STRED)	participant	507˙500.00
12	UNIVERSITETET I TROMSOE - NORGES ARKTISKE UNIVERSITET UNIVERSITETET I TROMSOE - NORGES ARKTISKE UNIVERSITET Organization address address: HANSINE HANSENS VEG 14 city: TROMSO postcode: 9019 website: http://uit.no/ contact info title: n.a. name: n.a. surname: n.a. function: n.a. email: n.a. telephone: n.a. fax: n.a.	NO (TROMSO)	participant	464˙140.00
13	FUNDACIO CENTRE DE REGULACIO GENOMICA FUNDACIO CENTRE DE REGULACIO GENOMICA Organization address address: CARRER DOCTOR AIGUADER 88 city: BARCELONA postcode: 8003 website: www.crg.es contact info title: n.a. name: n.a. surname: n.a. function: n.a. email: n.a. telephone: n.a. fax: n.a.	ES (BARCELONA)	participant	440˙000.00
14	CONSIGLIO NAZIONALE DELLE RICERCHE CONSIGLIO NAZIONALE DELLE RICERCHE Organization address address: PIAZZALE ALDO MORO 7 city: ROMA postcode: 185 website: www.cnr.it contact info title: n.a. name: n.a. surname: n.a. function: n.a. email: n.a. telephone: n.a. fax: n.a.	IT (ROMA)	participant	339˙000.00
15	UNIVERZA V LJUBLJANI UNIVERZA V LJUBLJANI Organization address address: KONGRESNI TRG 12 city: LJUBLJANA postcode: 1000 website: http://www.uni-lj.si contact info title: n.a. name: n.a. surname: n.a. function: n.a. email: n.a. telephone: n.a. fax: n.a.	SI (LJUBLJANA)	participant	329˙537.00
16	THE CHANCELLOR MASTERS AND SCHOLARSOF THE UNIVERSITY OF CAMBRIDGE THE CHANCELLOR MASTERS AND SCHOLARSOF THE UNIVERSITY OF CAMBRIDGE Organization address address: TRINITY LANE THE OLD SCHOOLS city: CAMBRIDGE postcode: CB2 1TN website: www.cam.ac.uk contact info title: n.a. name: n.a. surname: n.a. function: n.a. email: n.a. telephone: n.a. fax: n.a.	UK (CAMBRIDGE)	participant	315˙165.00
17	VIB VIB Organization address address: RIJVISSCHESTRAAT 120 city: ZWIJNAARDE - GENT postcode: 9052 website: www.vib.be contact info title: n.a. name: n.a. surname: n.a. function: n.a. email: n.a. telephone: n.a. fax: n.a.	BE (ZWIJNAARDE - GENT)	participant	258˙625.00
18	THE CHANCELLOR, MASTERS AND SCHOLARS OF THE UNIVERSITY OF OXFORD THE CHANCELLOR, MASTERS AND SCHOLARS OF THE UNIVERSITY OF OXFORD Organization address address: WELLINGTON SQUARE UNIVERSITY OFFICES city: OXFORD postcode: OX1 2JD website: www.ox.ac.uk contact info title: n.a. name: n.a. surname: n.a. function: n.a. email: n.a. telephone: n.a. fax: n.a.	UK (OXFORD)	participant	242˙957.00
19	UNIVERSITETET I BERGEN UNIVERSITETET I BERGEN Organization address address: MUSEPLASSEN 1 city: BERGEN postcode: 5020 website: www.uib.no contact info title: n.a. name: n.a. surname: n.a. function: n.a. email: n.a. telephone: n.a. fax: n.a.	NO (BERGEN)	participant	226˙301.00
20	FUNDACIO INSTITUT DE RECERCA BIOMEDICA (IRB BARCELONA) FUNDACIO INSTITUT DE RECERCA BIOMEDICA (IRB BARCELONA) Organization address address: CARRER BALDIRI REIXAC 10-12 PARC SCIENTIFIC DE BARCELONA city: BARCELONA postcode: 8028 website: www.irbbarcelona.org contact info title: n.a. name: n.a. surname: n.a. function: n.a. email: n.a. telephone: n.a. fax: n.a.	ES (BARCELONA)	participant	198˙000.00
21	USTAV ORGANICKE CHEMIE A BIOCHEMIE, AV CR, V.V.I. USTAV ORGANICKE CHEMIE A BIOCHEMIE, AV CR, V.V.I. Organization address address: FLEMINGOVO NAM. 542/2 city: PRAHA 6 postcode: 16610 website: www.uochb.cas.cz contact info title: n.a. name: n.a. surname: n.a. function: n.a. email: n.a. telephone: n.a. fax: n.a.	CZ (PRAHA 6)	participant	188˙350.00
22	FUNDACAO CALOUSTE GULBENKIAN FUNDACAO CALOUSTE GULBENKIAN Organization address address: AVENIDA BERNA 45 city: LISBOA postcode: 1000 website: www.igc.gulbenkian.pt contact info title: n.a. name: n.a. surname: n.a. function: n.a. email: n.a. telephone: n.a. fax: n.a.	PT (LISBOA)	participant	186˙250.00
23	EARLHAM INSTITUTE EARLHAM INSTITUTE Organization address address: NORWICH RESEARCH PARK COLNEY LANE city: NORWICH postcode: NR4 7UZ website: n.a. contact info title: n.a. name: n.a. surname: n.a. function: n.a. email: n.a. telephone: n.a. fax: n.a.	UK (NORWICH)	participant	183˙750.00
24	INSTITUT PASTEUR INSTITUT PASTEUR Organization address address: RUE DU DOCTEUR ROUX 25-28 city: PARIS CEDEX 15 postcode: 75724 website: http://www.pasteur.fr contact info title: n.a. name: n.a. surname: n.a. function: n.a. email: n.a. telephone: n.a. fax: n.a.	FR (PARIS CEDEX 15)	participant	182˙400.00
25	INESC ID - INSTITUTO DE ENGENHARIADE SISTEMAS E COMPUTADORES, INVESTIGACAO E DESENVOLVIMENTO EM LISBOA INESC ID - INSTITUTO DE ENGENHARIADE SISTEMAS E COMPUTADORES, INVESTIGACAO E DESENVOLVIMENTO EM LISBOA Organization address address: RUA ALVES REDOL 9 city: LISBOA postcode: 1000 029 website: www.inesc-id.pt contact info title: n.a. name: n.a. surname: n.a. function: n.a. email: n.a. telephone: n.a. fax: n.a.	PT (LISBOA)	participant	173˙750.00
26	UNIVERSIDAD POMPEU FABRA UNIVERSIDAD POMPEU FABRA Organization address address: PLACA DE LA MERCE, 10-12 city: BARCELONA postcode: 8002 website: www.upf.edu contact info title: n.a. name: n.a. surname: n.a. function: n.a. email: n.a. telephone: n.a. fax: n.a.	ES (BARCELONA)	participant	160˙056.00
27	WEIZMANN INSTITUTE OF SCIENCE WEIZMANN INSTITUTE OF SCIENCE Organization address address: HERZL STREET 234 city: REHOVOT postcode: 7610001 website: www.weizmann.ac.il contact info title: n.a. name: n.a. surname: n.a. function: n.a. email: n.a. telephone: n.a. fax: n.a.	IL (REHOVOT)	participant	137˙741.00
28	UNIVERSITETET I OSLO UNIVERSITETET I OSLO Organization address address: PROBLEMVEIEN 5-7 city: OSLO postcode: 313 website: www.uio.no contact info title: n.a. name: n.a. surname: n.a. function: n.a. email: n.a. telephone: n.a. fax: n.a.	NO (OSLO)	participant	130˙000.00
29	INSTITUT NATIONAL DE RECHERCHE POUR L'AGRICULTURE, L'ALIMENTATION ET L'ENVIRONNEMENT INSTITUT NATIONAL DE RECHERCHE POUR L'AGRICULTURE, L'ALIMENTATION ET L'ENVIRONNEMENT Organization address address: Rue De L'Universite 147 city: PARIS CEDEX 07 postcode: 75338 website: www.inra.fr contact info title: n.a. name: n.a. surname: n.a. function: n.a. email: n.a. telephone: n.a. fax: n.a.	FR (PARIS CEDEX 07)	participant	125˙000.00
30	CESNET ZAJMOVE SDRUZENI PRAVNICKYCH OSOB CESNET ZAJMOVE SDRUZENI PRAVNICKYCH OSOB Organization address address: ZIKOVA 4 city: PRAHA 6 postcode: 160 00 website: n.a. contact info title: n.a. name: n.a. surname: n.a. function: n.a. email: n.a. telephone: n.a. fax: n.a.	CZ (PRAHA 6)	participant	123˙750.00
31	CENTRE DE COOPERATION INTERNATIONALE EN RECHERCHE AGRONOMIQUE POUR LEDEVELOPPEMENT - C.I.R.A.D. EPIC CENTRE DE COOPERATION INTERNATIONALE EN RECHERCHE AGRONOMIQUE POUR LEDEVELOPPEMENT - C.I.R.A.D. EPIC Organization address address: RUE SCHEFFER 42 city: PARIS postcode: 75016 website: www.cirad.fr contact info title: n.a. name: n.a. surname: n.a. function: n.a. email: n.a. telephone: n.a. fax: n.a.	FR (PARIS)	participant	120˙846.00
32	NACIONALNI INSTITUT ZA BIOLOGIJO NACIONALNI INSTITUT ZA BIOLOGIJO Organization address address: VECNA POT 111 city: LJUBLJANA postcode: 1000 website: www.nib.si contact info title: n.a. name: n.a. surname: n.a. function: n.a. email: n.a. telephone: n.a. fax: n.a.	SI (LJUBLJANA)	participant	120˙632.00
33	NORGES TEKNISK-NATURVITENSKAPELIGE UNIVERSITET NTNU NORGES TEKNISK-NATURVITENSKAPELIGE UNIVERSITET NTNU Organization address address: HOGSKOLERINGEN 1 city: TRONDHEIM postcode: 7491 website: www.ntnu.no contact info title: n.a. name: n.a. surname: n.a. function: n.a. email: n.a. telephone: n.a. fax: n.a.	NO (TRONDHEIM)	participant	120˙000.00
34	HERIOT-WATT UNIVERSITY HERIOT-WATT UNIVERSITY Organization address address: Riccarton city: EDINBURGH postcode: EH14 4AS website: www.hw.ac.uk contact info title: n.a. name: n.a. surname: n.a. function: n.a. email: n.a. telephone: n.a. fax: n.a.	UK (EDINBURGH)	participant	105˙432.00
35	INSTITUTO DE BIOLOGIA EXPERIMENTAL E TECNOLOGICA INSTITUTO DE BIOLOGIA EXPERIMENTAL E TECNOLOGICA Organization address address: AVENIDA DA REPUBLICA QUINTO DO MARQUES city: OEIRAS postcode: 2781 901 website: www.ibet.pt contact info title: n.a. name: n.a. surname: n.a. function: n.a. email: n.a. telephone: n.a. fax: n.a.	PT (OEIRAS)	participant	100˙000.00
36	CENTRO DE CIENCIAS DO MAR DO ALGARVE CENTRO DE CIENCIAS DO MAR DO ALGARVE Organization address address: UNIVERSIDADE DO ALGARVE city: FARO postcode: 8005 032 website: n.a. contact info title: n.a. name: n.a. surname: n.a. function: n.a. email: n.a. telephone: n.a. fax: n.a.	PT (FARO)	participant	80˙532.00
37	BIOMEDICAL SCIENCES RESEARCH CENTER ALEXANDER FLEMING BIOMEDICAL SCIENCES RESEARCH CENTER ALEXANDER FLEMING Organization address address: FLEMING STREET 34 city: VARI-ATHENS postcode: 16672 website: www.fleming.gr contact info title: n.a. name: n.a. surname: n.a. function: n.a. email: n.a. telephone: n.a. fax: n.a.	EL (VARI-ATHENS)	participant	61˙498.00
38	THE HEBREW UNIVERSITY OF JERUSALEM THE HEBREW UNIVERSITY OF JERUSALEM Organization address address: EDMOND J SAFRA CAMPUS GIVAT RAM city: JERUSALEM postcode: 91904 website: www.huji.ac.il contact info title: n.a. name: n.a. surname: n.a. function: n.a. email: n.a. telephone: n.a. fax: n.a.	IL (JERUSALEM)	participant	49˙759.00
39	ATHINA-EREVNITIKO KENTRO KAINOTOMIAS STIS TECHNOLOGIES TIS PLIROFORIAS, TON EPIKOINONION KAI TIS GNOSIS ATHINA-EREVNITIKO KENTRO KAINOTOMIAS STIS TECHNOLOGIES TIS PLIROFORIAS, TON EPIKOINONION KAI TIS GNOSIS Organization address address: ARTEMIDOS 6 KAI EPIDAVROU city: MAROUSSI postcode: 151 25 website: www.athena-innovation.gr contact info title: n.a. name: n.a. surname: n.a. function: n.a. email: n.a. telephone: n.a. fax: n.a.	EL (MAROUSSI)	participant	43˙750.00
40	IDRYMA TECHNOLOGIAS KAI EREVNAS IDRYMA TECHNOLOGIAS KAI EREVNAS Organization address address: N PLASTIRA STR 100 city: IRAKLEIO postcode: 70013 website: www.forth.gr contact info title: n.a. name: n.a. surname: n.a. function: n.a. email: n.a. telephone: n.a. fax: n.a.	EL (IRAKLEIO)	participant	43˙750.00
41	UNIVERSIDAD DE MALAGA UNIVERSIDAD DE MALAGA Organization address address: AVDA CERVANTES, NUM. 2 city: MALAGA postcode: 29016 website: www.uma.es contact info title: n.a. name: n.a. surname: n.a. function: n.a. email: n.a. telephone: n.a. fax: n.a.	ES (MALAGA)	participant	43˙750.00
42	AGENCIA ESTATAL CONSEJO SUPERIOR DEINVESTIGACIONES CIENTIFICAS AGENCIA ESTATAL CONSEJO SUPERIOR DEINVESTIGACIONES CIENTIFICAS Organization address address: CALLE SERRANO 117 city: MADRID postcode: 28006 website: http://www.csic.es contact info title: n.a. name: n.a. surname: n.a. function: n.a. email: n.a. telephone: n.a. fax: n.a.	ES (MADRID)	participant	40˙000.00
43	FUNDACIO INSTITUT MAR D INVESTIGACIONS MEDIQUES IMIM FUNDACIO INSTITUT MAR D INVESTIGACIONS MEDIQUES IMIM Organization address address: Doctor Aiguader 88 city: BARCELONA postcode: 8003 website: www.imim.es contact info title: n.a. name: n.a. surname: n.a. function: n.a. email: n.a. telephone: n.a. fax: n.a.	ES (BARCELONA)	participant	40˙000.00
44	THE UNIVERSITY OF EDINBURGH THE UNIVERSITY OF EDINBURGH Organization address address: OLD COLLEGE, SOUTH BRIDGE city: EDINBURGH postcode: EH8 9YL website: www.ed.ac.uk contact info title: n.a. name: n.a. surname: n.a. function: n.a. email: n.a. telephone: n.a. fax: n.a.	UK (EDINBURGH)	participant	37˙258.00
45	FUNDACION CENTRO NACIONAL DE INVESTIGACIONES ONCOLOGICAS CARLOS III FUNDACION CENTRO NACIONAL DE INVESTIGACIONES ONCOLOGICAS CARLOS III Organization address address: CALLE MELCHOR FERNANDEZ ALMAGRO 3 city: MADRID postcode: 28029 website: www.cnio.es contact info title: n.a. name: n.a. surname: n.a. function: n.a. email: n.a. telephone: n.a. fax: n.a.	ES (MADRID)	participant	28˙537.00
46	FUNDACION PUBLICA ANDALUZA PROGRESO Y SALUD FUNDACION PUBLICA ANDALUZA PROGRESO Y SALUD Organization address address: AVENIDA AMERICO VESPUCIO 15 EDIF S2 city: SEVILLA postcode: 41092 website: www.juntadeandalucia.es/fundacionprogresoysalud contact info title: n.a. name: n.a. surname: n.a. function: n.a. email: n.a. telephone: n.a. fax: n.a.	ES (SEVILLA)	participant	27˙425.00
47	FUNDACION DE LA COMUNIDAD VALENCIANA CENTRO DE INVESTIGACION PRINCIPEFELIPE FUNDACION DE LA COMUNIDAD VALENCIANA CENTRO DE INVESTIGACION PRINCIPEFELIPE Organization address address: CALLE EDUARDO PRIMO YUFERA 3 city: VALENCIA postcode: 46012 website: http://www.cipf.es contact info title: n.a. name: n.a. surname: n.a. function: n.a. email: n.a. telephone: n.a. fax: n.a.	ES (VALENCIA)	participant	12˙575.00
48	LINKOPINGS UNIVERSITET LINKOPINGS UNIVERSITET Organization address address: CAMPUS VALLA city: LINKOPING postcode: 581 83 website: n.a. contact info title: n.a. name: n.a. surname: n.a. function: n.a. email: n.a. telephone: n.a. fax: n.a.	SE (LINKOPING)	participant	4˙450.00

Map

Project objective

The life sciences are undergoing a transformation. Modern experimental tools study the molecules, reactions, and organisation of life in unprecedented detail. The precipitous drop in costs for high-throughput biology has enabled European research laboratories to produce an ever-increasing amount of data. Life scientists are rapidly generating the most complex and heterogeneous datasets that science can currently imagine, with unprecedented volumes of biological data to manage. Data will only generate long-term value if it is Findable, Accessible, Interoperable and Re-usable (FAIR). This requires a scalable infrastructure that connects local, national and European efforts and provides standards, tools and training for data stewardship. Formally established as a legal entity in January 2014, ELIXIR - the European life science Infrastructure for Biological Information - is a distributed organisation comprising national bioinformatics research infrastructures and the European Bioinformatics Institute (EMBL-EBI). This coordinated infrastructure includes data standards, exchange, interoperability, storage, security and training. Recognising the importance of a data foundation for European life sciences, the ESFRI and European Council named ELIXIR as one of Europe’s priority Research Infrastructures. In response ELIXIR have developed ELIXIR-EXCELERATE. The project will fast-track ELIXIR’s early implementation phase by i) coordinate and enhance existing resources into a world-leading data service for academia and industry, ii) grow bioinformatics capacity and competence across Europe, and iii) complete the management processes needed for a large distributed infrastructure. ELIXIR-EXCELERATE will deliver a step-change in the life sciences. It will enable cost-effective and sustainable management and re-use of data for millions of users across the globe and improve the competitiveness of European life science industries through accessible data and robust standards and tools.

Deliverables

List of deliverables.
D6.1 Specific marine databases made publicly available	Documents, reports	2020-04-23 23:18:59
D6.2 Report on comprehensive metagenomic data standards environment	Documents, reports	2020-04-23 23:18:59
D8.4 Report on the ELIXIR workshop organized with the rare-disease communities	Documents, reports	2020-04-23 23:18:59
D2.1 Creation of a database warehouse infrastructure for storing and organizing data for online performance assessment experiments	Documents, reports	2020-04-23 23:19:00
D13.2 Report on ELIXIRâ€™s Communication Strategy	Documents, reports	2020-04-23 23:19:00
D9.4 Report on implementation of cloud access and secure user and data management	Documents, reports	2020-04-23 23:18:59
D1.6 Workbench integration enabler: implementation & evaluation of impact	Documents, reports	2020-04-23 23:19:00
D4.1 ELIXIR Technical Services Roadmap	Documents, reports	2020-04-23 23:18:59
D7.2 Phenotypic data exposed through integrating API by all participants	Documents, reports	2020-04-23 23:18:59
D2.2 A report on the coordination with WP1 on the incorporation of monitoring statistics and benchmarking results in registry releases	Documents, reports	2020-04-23 23:18:59
D9.2 Report on implementation of submissions interface and API	Documents, reports	2020-04-23 23:18:59
D1.5 Incorporation of monitoring statistics and benchmarking results in registry releases	Documents, reports	2020-04-23 23:19:00
D9.5 Report on implementation of ELSI and policy consideration for controlled access data	Documents, reports	2020-04-23 23:18:59
D1.2 Registry release with comprehensive coverage of ELIXIR Node resources, including resource data format curation and analysis	Documents, reports	2020-04-23 23:18:59
D11.1 Deliver the identified evaluation systems and good practice guidelines for training. Deliver a TeSS platform and identify e-learning solutions	Documents, reports	2020-04-23 23:18:59
D10.4 ELIXIR Advanced workshops on genome annotation	Documents, reports	2020-04-23 23:18:59
D7.1 Datasets annotated for at least 1 woody plant, cereal and solanaceous species; genotype, phenotype and sample meta data submitted to appropriate public archives	Documents, reports	2020-04-23 23:18:59
D13.1 Release of a live ELIXIR Communication Strategy, including annual updates thereafter	Documents, reports	2020-04-23 23:19:00
D11.2 Report on the training needs identified across the ELIXIR community	Documents, reports	2020-04-23 23:18:59
D8.3 Report on the ELIXIR workshop organized with the rare-disease communities	Documents, reports	2020-04-23 23:18:59
D3.1 List of metrics/quality criteria measuring the scientific impact, service usage, service delivery, and eligibility for â€œELIXIR Named Resourceâ€ and â€œELIXIR Core Resourceâ€ labels, to allow construction and extension of the ELIXIR Resource portfolio	Documents, reports	2020-04-23 23:19:00
D9.3 Report on implementation of value-added user applications and cohort integration	Documents, reports	2020-04-23 23:18:59
D8.1 Portfolio of ELIXIR data resources and tools for the rare diseases communities	Documents, reports	2020-04-23 23:18:59
D8.2 Documentation of the tools for the data manipulation and standard conversions in the rare-disease field	Documents, reports	2020-04-23 23:18:59
D13.3 Report on ELIXIRâ€™s International Strategy	Documents, reports	2020-04-23 23:19:00
D2.3 A report on the features and nature of novel data which are needed within online benchmarking experiments in different subareas	Documents, reports	2020-04-23 23:18:59
D1.1 Registry release with comprehensive coverage of ELIXIR Node resources, including resource data format curation and analysis	Documents, reports	2020-04-23 23:18:59
D12.2 ELIXIR Handbook of Operations	Documents, reports	2020-04-23 23:19:00
D10.3 ELIXIR Advanced workshops on genome annotation	Documents, reports	2020-04-23 23:18:59
D10.5 A Node report on regional priorities and channels to use. Available to all relevant partners in the Node network in that country	Documents, reports	2020-04-23 23:18:59
D9.1 Requirements analysis document	Documents, reports	2020-04-23 23:18:59
D3.2 A report describing the semantically enriched Europe PMC that links literature to ELIXIR Core resource data, exemplified by GeneRif annotations	Documents, reports	2020-04-23 23:19:00
D5.1 Interoperability Implementation Regulations	Documents, reports	2020-04-23 23:18:59
D4.2 Updated ELIXIR Technical Services Roadmap	Documents, reports	2020-04-23 23:18:59
D10.2 Blueprint on how to set up an ELIXIR data Node	Documents, reports	2020-02-12 15:36:54
D7.3 Implementation of BRAPI (Plant Breeding API) at all participating nodes	Documents, reports	2020-02-12 15:36:55
D5.3 Bring Your Own Data	Documents, reports	2020-02-12 15:36:52
D6.5 Improvement and Application of Eukaryotic Gene	Documents, reports	2020-02-12 15:37:48
D1.8 Matchmaking Service: implementation & evaluation of impact	Documents, reports	2020-02-12 15:37:42
D13.4 Report on the impact of the Innovation and SME programme on industry users	Documents, reports	2020-02-12 15:37:46
D10.1 Communities ofâ€ Good Practiceâ€ and Protocols of Transfer	Documents, reports	2020-02-12 15:36:52
D4.4 ELIXIR Technical Services document	Documents, reports	2020-02-12 15:36:20
D8.7 Options for sustainability of RD-Connect within the scope of ELIXIR	Documents, reports	2020-02-12 15:37:48
D8.6 Documentation on adequate quality reporting standards for genomics datasets	Documents, reports	2020-02-12 15:37:46
D1.3 Registry release with comprehensive coverage of ELIXIR Node resources, including resource data format curation and analysis	Documents, reports	2020-02-12 15:36:53
D3.3 Report describing ELIXIR-wide systems for the computer-assisted collection and delivery of harmonised metrics and quality criteria from multiple ELIXIR resources and collation of these at the ELIXIR Hub	Documents, reports	2020-02-12 15:37:49
D12.4 Updated long- term strategy for the sustainability of data management	Documents, reports	2020-02-12 15:36:57
D1.7 Description of the registry user helpdesk & impact on user support via community forums	Documents, reports	2020-02-12 15:37:49
D8.5 Report on the ELIXIR workshops organised with the rare-disease communities	Documents, reports	2020-02-12 15:37:25
D1.4 Registry release with comprehensive coverage of ELIXIR Node resources, including resource data format curation and analysis	Documents, reports	2020-02-12 15:36:54
D4.3 ELIXIR Technical Services Roadmap	Documents, reports	2020-02-12 15:36:15
D11.3 Report on training provided across the ELIXIR community	Documents, reports	2020-02-12 15:36:56
D6.3 Report describing a set of tools, pipelines and search engine for interrogation of marine metagenomic data	Documents, reports	2020-02-12 15:36:14
D6.4 Report on assessment criteria and standardisation of metagenome assembled genomes (MAGs) from Marine samples	Documents, reports	2020-02-12 15:36:55
D2.4 Final report on the impact of ELIXIR infrastructure for hosting scientific benchmarking and technical monitoring results	Documents, reports	2020-02-12 15:36:51

Take a look to the deliverables list in detail: detailed list of ELIXIR-EXCELERATE deliverables.

Publications

List of publications.
year	authors and title	journal	last update
2019	Capella-Gutierrez, Salvador; Haas, Juergen; GelpÃ, Josep Ll.; FernÃ¡ndez, JosÃ© Maria ELIXIR-EXCELERATE D2.4: Final report on the impact of ELIXIR infrastructure for hosting scientific benchmarking and technical monitoring results published pages: , ISSN: , DOI: 10.5281/zenodo.3362116	1	2020-04-23
2019	Blanchet, Christophe; Borg, Mikael; Chien, Jinny; Codo, Laia; Gelpi, Jose Ll.; GonzaLEZ, Montserrat; Laitinen, Jarno; Lappalainen, Ilkka; Linden, Mikael; Matyska, Ludek; Newhouse, Steven; NyrÃ¶nen, Tommi; Prochazka, Michael; Ruda, Mirek; Salminen, Harri; Staiger, Christine; Tedds, Jonathan; TÃ¶rnroos, Juha; Varma, Susheel; Wildish, Tony ELIXIR-EXCELERATE D4.4: ELIXIR Technical Services document published pages: , ISSN: , DOI: 10.5281/zenodo.3381598	1	2020-04-23
2018	Oliver S. Smart, VladimÃr HorskÃ½, Swanand Gore, Radka SvobodovÃ¡ VaÅ™ekovÃ¡, Veronika BendovÃ¡, Gerard J. Kleywegt, Sameer Velankar Validation of ligands in macromolecular structures determined by X-ray crystallography published pages: 228-236, ISSN: 2059-7983, DOI: 10.1107/S2059798318002541	Acta Crystallographica Section D Structural Biology 74/3	2020-04-23
2019	Cankut Ã‡ubuk, Marta R. Hidalgo, Alicia Amadoz, Kinza Rian, Francisco Salavert, Miguel A. Pujana, Francesca Mateo, Carmen Herranz, Jose Carbonell-Caballero, JoaquÃn Dopazo Differential metabolic activity and discovery of therapeutic targets using summarized metabolic pathway models published pages: , ISSN: 2056-7189, DOI: 10.1038/s41540-019-0087-2	npj Systems Biology and Applications 5/1	2020-04-23
2019	Persson, Bengt; Jareborg, Niclas ELIXIR-EXCELERATE D10.2: Blueprint on how to set up an ELIXIR data Node published pages: , ISSN: , DOI: 10.5281/zenodo.3381599	3	2020-04-23
2019	E. ChacÃ³nâ€Solano, C. LeÃ³n, F. DÃaz, F. GarcÃaâ€GarcÃa, M. GarcÃa, M.J. EscÃ¡mez, S. Guerreroâ€Aspizua, C.J. Conti, Ã. MencÃa, L. MartÃnezâ€SantamarÃa, S. Llames, M. PÃ©vida, J. Carbonellâ€Caballero, J.A. Puigâ€ButillÃ©, R. Maseda, S. Puig, R. de Lucas, E. Baselga, F. Larcher, J. Dopazo, M. RÃo Fibroblast activation and abnormal extracellular matrix remodelling as common hallmarks in three cancerâ€prone genodermatoses published pages: 512-522, ISSN: 0007-0963, DOI: 10.1111/bjd.17698	British Journal of Dermatology 181/3	2020-04-23
2019	Martin, Corrine; Smith, Andrew; Blomberg, Niklas; Velek, Premysl; Balzano, Melissa; Berman, Maia; Cook, Martin; Coppens, Frederik; Drysdale, Rachel; Durinx, Christine; Hancock, John; Harrow, Jennifer; Lanfear, Jerry; Lauer, Katharina; Palagi, Patricia; Pommier, Cyril; Repo, Susanna; Sansone, Susanna; Sarntivijai, Sirarat; Saunders, Gary; Tedds, Jonathan; van Gelder, Celia ELIXIR-EXCELERATE D13.3: Fast-track ELIXIR implementation and drive early user exploitation across the life sciences published pages: , ISSN: , DOI: 10.5281/zenodo.3384778	3	2020-04-23
2019	Durinx, Christine; Drysdale, Rachel; McEntyre, Jo; Stockinger, Heinz; Haas, Juergen; Redaschi, Nicole; Venkatesan, Aravind; Gruhl, Franziska; Cook, Chuck ELIXIR-EXCELERATE D3.3: Report describing ELIXIR-wide systems for the computer-assisted collection and delivery of harmonised metrics and quality criteria from multiple ELIXIR resources and collation of these at the ELIXIR Hub published pages: , ISSN: , DOI: 10.5281/zenodo.3362082	3	2020-04-23
2019	Miguel, CÃ©lia; Pommier, Cyril; Finkers, Richard; Coppens, Frederik; Bolser, Dan; Ruiz, Manuel; Adam-Blondon, Anne-FranÃ§oise; Gruden, Kristina; RamÅ¡ak, Å½iva; Papoutsoglou, Evangelia; Faria, Daniel; Costa, Bruno; Chaves, InÃªs ELIXIR-EXCELERATE D7.3: Implementation of BRAPI (Plant Breeding API) at all participating nodes published pages: , ISSN: , DOI: 10.5281/zenodo.3354265	1	2020-04-23
2019	Lantz, Henrik; Persson, Bengt; VondrÃ¡Å¡ek, JirÃ; LeskoÅ¡ek, Brane \"ELIXIR-EXCELERATE D10.1: Communities of \"\"Good Practice\"\" and Protocols of Transfer\" published pages: , ISSN: , DOI: 10.5281/zenodo.3354328	3	2020-04-23
2019	Lauer, Katharina; Smith, Andrew ELIXIR-EXCELERATE D13.4 The impact of the Innovation and SME Programme on industry users published pages: , ISSN: , DOI: 10.5281/zenodo.3357734	1	2020-04-23
2018	Oliver S. Smart, VladimÃr HorskÃ½, Swanand Gore, Radka SvobodovÃ¡ VaÅ™ekovÃ¡, Veronika BendovÃ¡, Gerard J. Kleywegt, Sameer Velankar Worldwide Protein Data Bank validation information: usage and trends published pages: 237-244, ISSN: 2059-7983, DOI: 10.1107/S2059798318003303	Acta Crystallographica Section D Structural Biology 74/3	2020-04-23
2019	KalaÅ¡, MatÃºÅ¡; Plantard, Laure; Sladoje, NataÅ¡a; Lindblad, Joakim; Kirschmann, Moritz,; Jones, Martin; Chessel, Anatole; Scholz, Leandro,; RÃ¶ssler, Fabienne; Dufour, Alexandre; Bogovic, John; Zhang, Chong; Waithe, Dominic; Sampaio, Paula; Paavolainen, Lassi; HÃ¶rl, David; Munck, Sebastien; Golani, Ofra; Moore, Josh; Gaignard, Alban; Levet, Florian; Paul-Gilloteaux, Perrine; Ison, Jon; Miura, K EDAM-bioimaging : The ontology of bioimage informatics operations, topics, data, and formats published pages: , ISSN: , DOI:	NEUBIAS, Feb 2019, Luxembourg, Luxembourg 1	2020-04-23
2019	DOMINGUEZ DEL ANGEL Victoria; SAND Olivier; MEDIGUE Claudine; VAN HELDEN Jacques 2017-2018 Activity Report, FRENCH INSTITUTE OF BIOINFORMATICS published pages: , ISSN: , DOI: 10.5281/zenodo.3520131	2	2020-04-23
2016	Luc Mottin, Julien Gobeill, Emilie Pasche, Pierre-AndrÃ© Michel, Isabelle Cusin, Pascale Gaudet, Patrick Ruch neXtA 5 : accelerating annotation of articles via automated approaches in neXtProt published pages: baw098, ISSN: 1758-0463, DOI: 10.1093/database/baw098	Database 2016	2020-04-23
2018	Lantz, Henrik; Leskosek, Brane ELIXIR Advanced workshops on genome annotation published pages: , ISSN: , DOI: 10.5281/zenodo.1321915		2020-04-23
2016	Francisco Salavert, Marta R. Hidago, Alicia Amadoz, Cankut Ã‡ubuk, Ignacio Medina, Daniel Crespo, Jose Carbonell-Caballero, JoaquÃn Dopazo Actionable pathways: interactive discovery of therapeutic targets using signaling pathway models published pages: W212-W216, ISSN: 0305-1048, DOI: 10.1093/nar/gkw369	Nucleic Acids Research 44/W1	2020-04-23
2017	Jaako Vilo; OndÅ™ej Hradil; Babis Savakis; Brane Leskosek A Node report on regional priorities and channels to use published pages: , ISSN: 0000-0000, DOI: 10.5281/zenodo.557029	Zenodo	2020-04-23
2018	Leskosek, Brane; Matalonga, Leslie; Kastrin, Andrej; Dimec, Jure; Femke Francissen; Beltran, Sergi; Coward, Eivind; Peterson, Hedi; Gut, Ivo; Roos, Marco; Varma, Susheel Report on the ELIXIR workshop organized with the rare-disease communities published pages: , ISSN: , DOI: 10.5281/zenodo.1321601		2020-04-23
2017	Mona Alshahrani, Mohammad Asif Khan, Omar Maddouri, Akira R Kinjo, NÃºria Queralt-Rosinach, Robert Hoehndorf Neuro-symbolic representation learning on biological knowledge graphs published pages: 2723-2730, ISSN: 1367-4803, DOI: 10.1093/bioinformatics/btx275	Bioinformatics 33/17	2020-04-23
2017	Petra ten Hoopen, Robert D. Finn, Lars Ailo Bongo, Erwan Corre, Bruno Fosso, Folker Meyer, Alex Mitchell, Eric Pelletier, Graziano Pesole, Monica Santamaria, Nils Peder Willassen, Guy Cochrane The metagenomic data life-cycle: standards and best practices published pages: 1-11, ISSN: 2047-217X, DOI: 10.1093/gigascience/gix047	GigaScience 6/8	2020-04-23
2017	Premysl Velek; Andrew Smith Release of a live ELIXIR Communication Strategy published pages: , ISSN: , DOI: 10.5281/zenodo.557084		2020-04-23
2018	AntÃ³nio Marcos Ramos, Ana UsiÃ©, Pedro Barbosa, Pedro M. Barros, Tiago Capote, InÃªs Chaves, Fernanda SimÃµes, Isabl Abreu, Isabel Carrasquinho, Carlos Faro, Joana B. GuimarÃ£es, Diogo MendonÃ§a, Filomena NÃ³brega, Leandra Rodrigues, Nelson J. M. Saibo, Maria Carolina Varela, ConceiÃ§Ã£o Egas, JosÃ© Matos, CÃ©lia M. Miguel, M. Margarida Oliveira, CÃ¢ndido P. Ricardo, SÃ³nia GonÃ§alves The draft genome sequence of cork oak published pages: 180069, ISSN: 2052-4463, DOI: 10.1038/sdata.2018.69	Scientific Data 5	2020-04-23
2017	Javier Lopez, Jacobo Coll, Matthias Haimel, Swaathi Kandasamy, Joaquin Tarraga, Pedro Furio-Tari, Wasim Bari, Marta Bleda, Antonio Rueda, Stefan GrÃ¤f, Augusto Rendon, Joaquin Dopazo, Ignacio Medina HGVA: the Human Genome Variation Archive published pages: W189-W194, ISSN: 0305-1048, DOI: 10.1093/nar/gkx445	Nucleic Acids Research 45/W1	2020-04-23
2016	D. Tabas-Madrid, J. Segura, R. Sanchez-Garcia, J. Cuenca-Alba, C.O.S. Sorzano, J.M. Carazo 3DBIONOTES: A unified, enriched and interactive view of macromolecular information published pages: 231-234, ISSN: 1047-8477, DOI: 10.1016/j.jsb.2016.02.007	Journal of Structural Biology 194/2	2020-04-23
2017	Alba GutiÃ©rrez-SacristÃ¡n, Carles HernÃ¡ndez-Ferrer, Juan R GonzÃ¡lez, Laura I Furlong psygenet2r: a R/Bioconductor package for the analysis of psychiatric disease genes published pages: 4004-4006, ISSN: 1367-4803, DOI: 10.1093/bioinformatics/btx506	Bioinformatics 33/24	2020-04-23
2017	Carlos Horro, Martin Cook, Teresa K Attwood, Michelle D Brazas, John M Hancock, Patricia Palagi, Manuel Corpas, Rafael Jimenez BioCIDER: a Contextualisation InDEx for biological Resources discovery published pages: 2607-2608, ISSN: 1367-4803, DOI: 10.1093/bioinformatics/btx213	Bioinformatics 33/16	2020-04-23
2018	Alexia Giannoula, Alba Gutierrez-SacristÃ¡n, Ãlex Bravo, Ferran Sanz, Laura I. Furlong Identifying temporal patterns in patient disease trajectories using dynamic time warping: A population-based study published pages: , ISSN: 2045-2322, DOI: 10.1038/s41598-018-22578-1	Scientific Reports 8/1	2020-04-23
2017	VÃctor LÃ³pez-Ferrando, Andrea Gazzo, Xavier deÂ laÂ Cruz, Modesto Orozco, Josep Ll GelpÃ PMut: a web-based tool for the annotation of pathological variants on proteins, 2017 update published pages: W222-W228, ISSN: 0305-1048, DOI: 10.1093/nar/gkx313	Nucleic Acids Research 45/W1	2020-04-23
2017	Segura, Joan; Sanchez-Garcia, Ruben; Martinez, Marta; Cuenca-Alba, Jesus; Tabas-Madrid, Daniel; Sorzano, C.O.S; Carazo, JM 3DBIONOTES v2.0: a web server for the automatic annotation of macromolecular structures published pages: , ISSN: 1460-2059, DOI: 10.5281/zenodo.1038019	Bioinformatics	2020-04-23
2017	Adam-Blondon, Anne-FranÃ§oise; Chaves, InÃªs; Coppens, Frederik; Finkers, Richard; Horro, Carlos; Kersey, Paul; Michotey, Celia; Miguel, CÃ©lia; Papoutsoglu, Evangelia; Pommier, Cyril; Ramsak, Ziva ELIXIR EXCELERATE Deliverable D7.1 published pages: , ISSN: , DOI: 10.5281/zenodo.1111825		2020-04-23
2016	ELIXIR Compute platform Strategy for the adoption and use of an AAI within ELIXIR published pages: , ISSN: , DOI: 10.5281/zenodo.148302		2020-04-23
2016	Tong Shu Li, Ã€lex Bravo, Laura I. Furlong, Benjamin M. Good, Andrew I. Su A crowdsourcing workflow for extracting chemical-induced disease relations from free text published pages: baw051, ISSN: 1758-0463, DOI: 10.1093/database/baw051	Database 2016	2020-04-23
2017	Chao Zhang, Jochem Bijlard, Christine Staiger, Serena Scollen, David van Enckevort, Youri Hoogstrate, Alexander Senf, Saskia Hiltemann, Susanna Repo, Wibo Pipping, Mariska Bierkens, Stefan Payralbe, Bas Stringer, Jaap Heringa, Andrew Stubbs, Luiz Olavo Bonino Da Silva Santos, Jeroen Belien, Ward Weistra, Rita Azevedo, Kees van Bochove, Gerrit Meijer, Jan-Willem Boiten, Jordi Rambla, Remond Fijnema Systematically linking tranSMART, Galaxy and EGA for reusing human translational research data published pages: 1488, ISSN: 2046-1402, DOI: 10.12688/f1000research.12168.1	F1000Research 6	2020-04-23
2017	HÃ©ctor Climente-GonzÃ¡lez, Eduard Porta-Pardo, Adam Godzik, Eduardo Eyras The Functional Impact of Alternative Splicing in Cancer published pages: 2215-2226, ISSN: 2211-1247, DOI: 10.1016/j.celrep.2017.08.012	Cell Reports 20/9	2020-04-23
2016	Youri Hoogstrate, Chao Zhang, Alexander Senf, Jochem Bijlard, Saskia Hiltemann, David van Enckevort, Susanna Repo, Jaap Heringa, Guido Jenster, Remond J.A. Fijneman, Jan-Willem Boiten, Gerrit A. Meijer, Andrew Stubbs, Jordi Rambla, Dylan Spalding, Sanne Abeln Integration of EGA secure data access into Galaxy published pages: 2841, ISSN: 2046-1402, DOI: 10.12688/f1000research.10221.1	F1000Research 5	2020-04-23
2016	Celia van Gelder; Sarah Morgan; Allegra Via; Rita Hendricusdottir; Eija Korpelainen; Chris Ponting; Terri Attwood; Patricia Palagi Report on the training needs identified across the ELIXIR community published pages: , ISSN: 0000-0000, DOI: 10.5281/zenodo.61411	Zenodo	2020-04-23
2016	M. Gonzalez; S. Suhr Data Quality Assurance Governance published pages: , ISSN: 0000-0000, DOI: 10.5281/zenodo.61417	Zenodo	2020-04-23
2016	Ivo Gut; Marco Roos; et al. ELIXIR workshops organized with the Rare Disease community published pages: , ISSN: 0000-0000, DOI: 10.5281/zenodo.557065	Zenodo	2020-04-23
2017	Inge Alexander Raknes; Guy Cochrane; Lars Ailo Bongo; Nils Peder Willassen; Rob Finn; Juan Fu; Sudhagar Veerabadran Balasundaram; Espen Robertsen; Terje Klementsen; Giacomo Tartari Specific marine databases published pages: , ISSN: 0000-0000, DOI: 10.5281/zenodo.557021	Zenodo	2020-04-23
2017	Doppelt-Azeroual, O., Mareuil F., Deveaud, E.; KalaÅ¡, M., Soranzo, N.; van den Beek, M., GrÃ¼ning, B., Ison, J. and MÃ©nager, H. ReGaTE, Registration of Galaxy Tools in Elixir published pages: , ISSN: 2047-217X, DOI: 10.1093/gigascience/gix022	GigaScience	2020-04-23
2016	NÃºria Queralt-Rosinach, Janet PiÃ±ero, Ã€lex Bravo, Ferran Sanz, Laura I. Furlong DisGeNET-RDF: harnessing the innovative power of the Semantic Web to explore the genetic basis of diseases published pages: 2236-2238, ISSN: 1367-4803, DOI: 10.1093/bioinformatics/btw214	Bioinformatics 32/14	2020-04-23
2017	Espen Mikal Robertsen, Hubert Denise, Alex Mitchell, Robert D. Finn, Lars Ailo Bongo, Nils Peder Willassen ELIXIR pilot action: Marine metagenomics â€“ towards a domain specific set of sustainable services published pages: , ISSN: 2046-1402, DOI: 10.12688/f1000research.10443.1	F1000Research	2020-04-23
2017	Joaquin Dopazo, Cesim Erten Graph-theoretical comparison of normal and tumor networks in identifying BRCA genes published pages: , ISSN: 1752-0509, DOI: 10.1186/s12918-017-0495-0	BMC Systems Biology 11/1	2020-04-23
2018	Victoria Dominguez Del Angel, Erik Hjerde, Lieven Sterck, Salvadors Capella-Gutierrez, Cederic Notredame, Olga Vinnere Pettersson, Joelle Amselem, Laurent Bouri, Stephanie Bocs, Christophe Klopp, Jean-Francois Gibrat, Anna Vlasova, Brane L. Leskosek, Lucile Soler, Mahesh Binzer-Panchal, Henrik Lantz Ten steps to get started in Genome Assembly and Annotation published pages: 148, ISSN: 2046-1402, DOI: 10.12688/f1000research.13598.1	F1000Research 7	2020-04-23
2018	Ison, Jon; Brunak, SÃ¸ren; Tools platform community REPORT: Registry release with comprehensive coverage of ELIXIR Node resources, including resource data format curation and analysis published pages: , ISSN: , DOI: 10.5281/zenodo.1321740		2020-04-23
2017	Salvador Capella-Gutierrez; Diana de la Iglesia; JÃ¼rgen Haas; Josep LluÃs Gelpi; JosÃ© MarÃa FernÃ¡ndez Creation of a database warehouse infrastructure for storing and organizing data for online performance assessment experiments published pages: , ISSN: 0000-0000, DOI: 10.5281/zenodo.557010	Zenodo	2020-04-23
2017	Adam Hospital, Michela Candotti, Josep LluÃs GelpÃ, Modesto Orozco The Multiple Roles of Waters in Protein Solvation published pages: 3636-3643, ISSN: 1520-6106, DOI: 10.1021/acs.jpcb.6b09676	The Journal of Physical Chemistry B 121/15	2020-04-23
2015	Niklas Blomberg, Arlindo Oliveira, Barend Mons, Bengt Persson, Inge Jonassen The ELIXIR channel in F1000Research published pages: , ISSN: 2046-1402, DOI: 10.12688/f1000research.7587.1	F1000Research	2020-04-23
2018	Matteo Chiara, Antonio Placido, Ernesto Picardi, Luigi Ruggiero Ceci, David Stephen Horner, Graziano Pesole A-GAME: improving the assembly of pooled functional metagenomics sequence data published pages: , ISSN: 1471-2164, DOI: 10.1186/s12864-017-4369-z	BMC Genomics 19/1	2020-04-23
2017	Aleksandra Pawlik, Celia W.G. van Gelder, Aleksandra Nenadic, Patricia M. Palagi, Eija Korpelainen, Philip Lijnzaad, Diana Marek, Susanna-Assunta Sansone, John Hancock, Carole Goble Developing a strategy for computational lab skills training through Software and Data Carpentry: Experiences from the ELIXIR Pilot action published pages: 1040, ISSN: 2046-1402, DOI: 10.12688/f1000research.11718.1	F1000Research 6	2020-04-23
2017	Michiel VanÂ Bel, Tim Diels, Emmelien Vancaester, Lukasz Kreft, Alexander Botzki, Yves VanÂ deÂ Peer, Frederik Coppens, Klaas Vandepoele PLAZA 4.0: an integrative resource for functional, evolutionary and comparative plant genomics published pages: D1190-D1196, ISSN: 0305-1048, DOI: 10.1093/nar/gkx1002	Nucleic Acids Research 46/D1	2020-04-23
2017	Susanna-Assunta Sansone, Alejandra Gonzalez-Beltran, Philippe Rocca-Serra, George Alter, Jeffrey S. Grethe, Hua Xu, Ian M. Fore, Jared Lyle, Anupama E. Gururaj, Xiaoling Chen, Hyeon-eui Kim, Nansu Zong, Yueling Li, Ruiling Liu, I. Burak Ozyurt, Lucila Ohno-Machado DATS, the data tag suite to enable discoverability of datasets published pages: 170059, ISSN: 2052-4463, DOI: 10.1038/sdata.2017.59	Scientific Data 4	2020-04-23
2018	Carole Goble, Stian Soiland-Reyes, Sean Bechhofe Research Object Community Update published pages: , ISSN: , DOI: 10.5281/zenodo.1313066		2020-04-23
2017	PÃ©rez-PÃ©rez, Martin; Rabal, Obdulia; PÃ©rez-RodrÃguez, Gael; Vazquez, Miguel; Fdez-Riverola, Florentino; Oyarzabal, Julen; Valencia, Alfonso; LourenÃ§o, AnÃ¡lia; Krallinger, Martin Evaluation of chemical and gene/protein entity recognition systems at BioCreative V.5: the CEMP and GPRO patents tracks published pages: , ISSN: , DOI:		2020-04-23
2017	B. Fosso M. Santamaria M. Dâ€™Antonio D. Lovero G. Corrado E. Vizza N. Passaro A.R. Garbuglia M.R. Capobianchi M. Crescenzi G. Valiente G. Pesole MetaShot: an accurate workflow for taxon classification of host-associated microbiome from shotgun metagenomic data published pages: , ISSN: 1460-2059, DOI: 10.1093/bioinformatics/btx036	Bioinformatics	2020-04-23
2018	elek, Premysl; Wiles, Kayla; Smith, Andrew; Garcia Roman, Pablo; Cook, Martin; Cernoskova, Dana Deliverable 13.2: Report on ELIXIR\'s Communication Strategy published pages: , ISSN: , DOI: 10.5281/zenodo.1321214		2020-04-23
2017	Maria Levchenko, Yuci Gou, Florian Graef, Audrey Hamelers, Zhan Huang, Michele Ide-Smith, Anusha Iyer, Oliver Kilian, Jyothi Katuri, Jee-Hyub Kim, Nikos Marinos, Rakesh Nambiar, Michael Parkin, Xingjun Pi, Frances Rogers, Francesco Talo, Vid Vartak, Aravind Venkatesan, Johanna McEntyre Europe PMC in 2017 published pages: D1254-D1260, ISSN: 0305-1048, DOI: 10.1093/nar/gkx1005	Nucleic Acids Research 46/D1	2020-04-23
2018	NyrÃ¶nen, Tommi; Matyska, Ludek; Newhouse, Steven; Compute platform community REPORT: Updated ELIXIR Technical Services Roadmap published pages: , ISSN: , DOI: 10.5281/zenodo.1321699		2020-04-23
2017	Alex L Mitchell, Maxim Scheremetjew, Hubert Denise, Simon Potter, Aleksandra Tarkowska, Matloob Qureshi, Gustavo A Salazar, Sebastien Pesseat, Miguel A Boland, FionaÂ MÂ I Hunter, Petra tenÂ Hoopen, Blaise Alako, Clara Amid, Darren J Wilkinson, Thomas P Curtis, Guy Cochrane, Robert D Finn EBI Metagenomics in 2017: enriching the analysis of microbial communities, from sequence reads to assemblies published pages: D726-D735, ISSN: 0305-1048, DOI: 10.1093/nar/gkx967	Nucleic Acids Research 46/D1	2020-04-23
2016	Johanna McEntyre; Christine Durinx; ELIXIR Partners List of metrics/quality criteria measuring the scientific impact, service usage, service delivery, and eligibility for â€œELIXIR Named Resourceâ€ and â€œELIXIR Core Resourceâ€ labels, to allow construction and extension of the ELIXIR Resource portfolio published pages: , ISSN: 0000-0000, DOI: 10.5281/zenodo.60706	Zenodo	2020-04-23
2018	Pedro G. Ferreira, Manuel MuÃ±oz-Aguirre, Ferran Reverter, Caio P. SÃ¡ Godinho, Abel Sousa, Alicia Amadoz, Reza Sodaei, Marta R. Hidalgo, Dmitri Pervouchine, Jose Carbonell-Caballero, Ramil Nurtdinov, Alessandra Breschi, Raziel Amador, PatrÃcia Oliveira, Cankut Ã‡ubuk, JoÃ£o Curado, FranÃ§ois Aguet, Carla Oliveira, Joaquin Dopazo, Michael Sammeth, Kristin G. Ardlie, Roderic GuigÃ³ The effects of death and post-mortem cold ischemia on human tissue transcriptomes published pages: , ISSN: 2041-1723, DOI: 10.1038/s41467-017-02772-x	Nature Communications 9/1	2020-04-23
2016	Henrik Lantz; Bengt Persson ELIXIR Advanced workshops on genome annotation published pages: , ISSN: 0000-0000, DOI: 10.5281/zenodo.557060	Zenodo	2020-04-23
2018	Hermjakob, Henning; Mcmurry, Julie; Beard, Niall; Clark, Tim; JanÃ©e, Greg; Jimenez, Rafael; Grethe, Jeffrey; Wimalaratne, Sarala; Kunze, John; Juty, Nick Uniform Resolution of Compact Identifiers for Biomedical Data published pages: , ISSN: , DOI: 10.1101/101279	1	2020-04-23
2016	Jaroslav Bendl, Jan Stourac, Eva Sebestova, Ondrej Vavra, Milos Musil, Jan Brezovsky, Jiri Damborsky HotSpot Wizard 2.0: automated design of site-specific mutations and smart libraries in protein engineering published pages: W479-W487, ISSN: 0305-1048, DOI: 10.1093/nar/gkw416	Nucleic Acids Research 44/W1	2020-04-23
2017	Terje Klemetsen, Inge A Raknes, Juan Fu, Alexander Agafonov, Sudhagar V Balasundaram, Giacomo Tartari, Espen Robertsen, Nils P Willassen The MAR databases: development and implementation of databases specific for marine metagenomics published pages: D692-D699, ISSN: 0305-1048, DOI: 10.1093/nar/gkx1036	Nucleic Acids Research 46/D1	2020-04-23
2018	Niklas Blomberg; Martin Cook; Pablo Roman Garcia; Stephanie Suhr; Premysl Velek; Montserrat Gonzalez; Susanna Repo ELIXIR Handbook of Operations published pages: , ISSN: , DOI: 10.5281/zenodo.1289765		2020-04-23
2016	Christine Durinx, Jo McEntyre, Ron Appel, Rolf Apweiler, Mary Barlow, Niklas Blomberg, Chuck Cook, Elisabeth Gasteiger, Jee-Hyub Kim, Rodrigo Lopez, Nicole Redaschi, Heinz Stockinger, Daniel Teixeira, Alfonso Valencia Identifying ELIXIR Core Data Resources published pages: 2422, ISSN: 2046-1402, DOI: 10.12688/f1000research.9656.1	F1000Research 5	2020-04-23
2016	Lars Ailo Bongo; Mikael Borg; Amelie Cornelis; Montserrat Gonzalez; Luis Gracia; Rob Hooft; Jarno Laitinen; Ilkka Lappalainen; Mikael Linden; Ludek Matyska; Steven Newhouse; Tommi NyrÃ¶nen; Michal Prochazka; Mirek Ruda; Harri Salminen; Christine Staiger; Tony Wildish A Technical Services Roadmap for supporting Life Science Research in Europe published pages: , ISSN: 0000-0000, DOI: 10.5281/zenodo.60291	Zenodo	2020-04-23
2016	Janet PiÃ±ero, Ariel Berenstein, Abel Gonzalez-Perez, Ariel Chernomoretz, Laura I. Furlong Uncovering disease mechanisms through network biology in the era of Next Generation Sequencing published pages: 24570, ISSN: 2045-2322, DOI: 10.1038/srep24570	Scientific Reports 6	2020-04-23
2016	ChacÃ³n, Alejandro; Camps, Jordi; Espinosa, Antonio; Gut, Marta; Laurie, Steve; Marcoâ€Sola, Santiago; Heath, Simon; Trotta, Jeanâ€Remi; Beltran, Sergi; Gut, Ivo; Fernandezâ€Callejo, Marcos From Wetâ€Lab to Variations: Concordance and Speed of Bioinformatics Pipelines for Whole Genome and Whole Exome Sequencing published pages: , ISSN: 1098-1004, DOI: 10.1002/humu.23114	Human Mutation 2	2020-04-23
2017	Ana Luisa Toribio, Blaise Alako, Clara Amid, Ana CerdeÃ±o-TarrÃ¡ga, Laura Clarke, Iain Cleland, Susan Fairley, Richard Gibson, Neil Goodgame, Petra tenÂ Hoopen, Suran Jayathilaka, Simon Kay, Rasko Leinonen, Xin Liu, JosuÃ© MartÃnez-Villacorta, Nima Pakseresht, Jeena Rajan, Kethi Reddy, Marc Rosello, Nicole Silvester, Dmitriy Smirnov, Daniel Vaughan, Vadim Zalunin, Guy Cochrane European Nucleotide Archive in 2016 published pages: D32-D36, ISSN: 0305-1048, DOI: 10.1093/nar/gkw1106	Nucleic Acids Research 45/D1	2020-04-23
2017	L. Larcombe, R. Hendricusdottir, T.K. Attwood, F. Bacall, N. Beard, L.J. Bellis, W.B. Dunn, J.M. Hancock, A. Nenadic, C. Orengo, B. Overduin, S-A Sansone, M. Thurston, M.R. Viant, C.L. Winder, C.A. Goble, C.P. Ponting, G. Rustici ELIXIR-UK role in bioinformatics training at the national level and across ELIXIR published pages: 952, ISSN: 2046-1402, DOI: 10.12688/f1000research.11837.1	F1000Research 6	2020-04-23
2017	Buchhalter, Ivo; Whalley, Justin; Hutter, Barbara; Livitz, Dimitri; Perry, Marc; Rosenberg, Mara; Saksena, Gordon; Trotta, Jean-RÃ©mi; Raine, Keiran; Eils, Roland; Korbel, Jan; Rheinbay, Esther; Network, Pcawg; , Pcawg-Qc; Kleinheinz, Kortine; Gerhard, Daniela; Campbell, Peter; Getz, Gad; Schlesner, Matthias; Werner, Johannes; Beltran, Sergi; Gut, Marta; Huebschmann, Daniel; Gut, Ivo; Stobbe, Mira Framework For Quality Assessment Of Whole Genome, Cancer Sequences published pages: , ISSN: , DOI: 10.1101/140921		2020-04-23
2017	JosÃ© Carbonell-Caballero, Alicia Amadoz, Roberto Alonso, Marta R Hidalgo, Cankut Ã‡ubuk, David Conesa, Antonio LÃ³pez-QuÃlez, JoaquÃn Dopazo Reference genome assessment from a population scale perspective: an accurate profile of variability and noise published pages: 3511-3517, ISSN: 1367-4803, DOI: 10.1093/bioinformatics/btx482	Bioinformatics 33/22	2020-04-23
2017	Kuzmanic, A.; Sutto, L.; Saladino, G.; Nebreda, A. R.; Gervasio, F. L.; Orozco, M. Changes in the free-energy landscape of p38Î± MAP kinase through its canonical activation and binding events as studied by enhanced molecular dynamics simulations published pages: , ISSN: 2050-084X, DOI: 10.7554/eLife.22175.001	eLife , 6 , Article e22175. (2017) 2	2020-04-23
2017	Sarah L Morgan, Patricia M Palagi, Pedro L Fernandes, Eija Koperlainen, Jure Dimec, Diana Marek, Lee Larcombe, Gabriella Rustici, Teresa K Attwood, Allegra Via The ELIXIR-EXCELERATE Train-the-Trainer pilot programme: empower researchers to deliver high-quality training published pages: 1557, ISSN: 2046-1402, DOI: 10.12688/f1000research.12332.1	F1000Research 6	2020-04-23
2017	Roni Rasnic, Nathan Linial, Michal Linial Enhancing identification of cancer types via lowly-expressed microRNAs published pages: 5048-5060, ISSN: 0305-1048, DOI: 10.1093/nar/gkx210	Nucleic Acids Research 45/9	2020-04-23
2017	JosÃ© M. Juanes, AsunciÃ³n Gallego, JoaquÃn TÃ¡rraga, Felipe J. Chaves, Pablo MarÃn-Garcia, Ignacio Medina, Vicente Arnau, JoaquÃn Dopazo VISMapper: ultra-fast exhaustive cartography of viral insertion sites for gene therapy published pages: , ISSN: 1471-2105, DOI: 10.1186/s12859-017-1837-z	BMC Bioinformatics 18/1	2020-04-23
2016	Stephanie Suhr; Niklas Blomberg ELIXIR Ethics Policy published pages: , ISSN: 0000-0000, DOI: 10.5281/zenodo.557027	Zenodo	2020-04-23
2017	Nicole Silvester, Blaise Alako, Clara Amid, Ana CerdeÃ±o-TarrÃ¡ga, Laura Clarke, Iain Cleland, Peter W Harrison, Suran Jayathilaka, Simon Kay, Thomas Keane, Rasko Leinonen, Xin Liu, JosuÃ© MartÃnez-Villacorta, Manuela Menchi, Kethi Reddy, Nima Pakseresht, Jeena Rajan, Marc Rossello, Dmitriy Smirnov, Ana L Toribio, Daniel Vaughan, Vadim Zalunin, Guy Cochrane The European Nucleotide Archive in 2017 published pages: D36-D40, ISSN: 0305-1048, DOI: 10.1093/nar/gkx1125	Nucleic Acids Research 46/D1	2020-04-23
2018	Daniel Faria, Catia Pesquita, Isabela Mott, Catarina Martins, Francisco M. Couto, Isabel F. Cruz Tackling the challenges of matching biomedical ontologies published pages: , ISSN: 2041-1480, DOI: 10.1186/s13326-017-0170-9	Journal of Biomedical Semantics 9/1	2020-04-23
2016	Ã€lex Bravo, Tong Shu Li, Andrew I. Su, Benjamin M. Good, Laura I. Furlong Combining machine learning, crowdsourcing and expert knowledge to detect chemical-induced diseases in text published pages: baw094, ISSN: 1758-0463, DOI: 10.1093/database/baw094	Database 2016	2020-04-23
2016	All EXCELERATE-funded partners, and many other non- ELIXIR organisations (see https://bio.tools/governance) have contributed to this work Registry release with comprehensive coverage of ELIXIR Node resources, including resource data format curation and analysis published pages: , ISSN: 0000-0000, DOI: 10.5281/zenodo.61416	Zenodo	2020-04-23
2018	Sarala M. Wimalaratne, Nick Juty, John Kunze, Greg JanÃ©e, Julie A. McMurry, Niall Beard, Rafael Jimenez, Jeffrey S. Grethe, Henning Hermjakob, Maryann E. Martone, Tim Clark Uniform resolution of compact identifiers for biomedical data published pages: 180029, ISSN: 2052-4463, DOI: 10.1038/sdata.2018.29	Scientific Data 5	2020-04-23
2016	Palagi, Patricia M.; van Gelder, Celia W. G.; Attwood, Teresa K; Leskosek, Brane L.; Morgan, Sarah; Dimec, Jure; Mulder, Nicola Defining a lingua franca for the ELIXIR/GOBLET e-learning ecosystem published pages: , ISSN: , DOI: 10.5281/zenodo.166378	1	2020-04-23
2017	Kenzo-Hugo Hillion, Ivan Kuzmin, Anton Khodak, Eric Rasche, Michael Crusoe, Hedi Peterson, Jon Ison, HervÃ© MÃ©nager Using bio.tools to generate and annotate workbench tool descriptions published pages: 2074, ISSN: 2046-1402, DOI: 10.12688/f1000research.12974.1	F1000Research 6	2020-04-23
2017	Annemarie H. Eckes, Tomasz GubaÅ‚a, Piotr Nowakowski, Tomasz Szymczyszyn, Rachel Wells, Judith A. Irwin, Carlos Horro, John M. Hancock, Graham King, Sarah C. Dyer, Wiktor Jurkowski Introducing the Brassica Information Portal: Towards integrating genotypic and phenotypic Brassica crop data published pages: 465, ISSN: 2046-1402, DOI: 10.12688/f1000research.11301.1	F1000Research 6	2020-04-23
2018	Guy Cochrane; Rob Finn; Nils Peder Willassen; Lars Ailo Bongo; Monica Santamaria; Bruno Fosso; Eric Pelletier; Erwan Corre; Alex Mitchell; Simon Potter ELIXIR-EXCELERATE: Deliverable 6.2: Report on comprehensive metagenomic data standards environment published pages: , ISSN: , DOI: 10.5281/zenodo.1229221		2020-04-23
2016	Adam Hospital, Pau Andrio, Cesare Cugnasco, Laia Codo, Yolanda Becerra, Pablo D. Dans, Federica Battistini, Jordi Torres, RamÃ³n GoÃ±i, Modesto Orozco, Josep Ll. GelpÃ BIGNASim: a NoSQL database structure and analysis portal for nucleic acids simulation data published pages: D272-D278, ISSN: 0305-1048, DOI: 10.1093/nar/gkv1301	Nucleic Acids Research 44/D1	2020-04-23
2017	Konstantinos Zagganas, Thanasis Vergoulis, Maria D. Paraskevopoulou, Ioannis S. Vlachos, Spiros Skiadopoulos, Theodore Dalamagas BUFET: boosting the unbiased miRNA functional enrichment analysis using bitsets published pages: , ISSN: 1471-2105, DOI: 10.1186/s12859-017-1812-8	BMC Bioinformatics 18/1	2020-04-23
2017	Hidalgo, Marta; Dopazo, JoaquÃn; Vert, Jean-Philippe; Carbonell-Caballero, Jose; Amadoz, Alicia; Cubuk, Cankut; Jiao, Yunlong Signaling Pathway Activities Improve Prognosis for Breast Cancer published pages: , ISSN: , DOI: 10.1101/132357		2020-04-23
2012	Aravind Venkatesan, Jee-Hyub Kim, Francesco Talo, Michele Ide-Smith, Julien Gobeill, Jacob Carter, Riza Batista-Navarro, Sophia Ananiadou, Patrick Ruch, Johanna McEntyre SciLite: a platform for displaying text-mined annotations as a means to link research articles with biological data published pages: 25, ISSN: 2398-502X, DOI: 10.12688/wellcomeopenres.10210.1	Wellcome Open Research 1	2020-04-23
2016	Matias M. Falco, Marta Bleda, JosÃ© Carbonell-Caballero, JoaquÃn Dopazo The pan-cancer pathological regulatory landscape published pages: , ISSN: 2045-2322, DOI: 10.1038/srep39709	Scientific Reports 6/1	2020-04-23
2017	LukÃ¡Å¡ Pravda, David Sehnal, Radka SvobodovÃ¡Â VaÅ™ekovÃ¡, Veronika NavrÃ¡tilovÃ¡, Dominik TouÅ¡ek, Karel Berka, Michal Otyepka, Jaroslav KoÄa ChannelsDB: database of biomacromolecular tunnels and pores published pages: D399-D405, ISSN: 0305-1048, DOI: 10.1093/nar/gkx868	Nucleic Acids Research 46/D1	2020-04-23
2017	AmadÃs PagÃ¨s, Ivan Dotu, Joan PallarÃ¨s-Albanell, EulÃ lia MartÃ, Roderic GuigÃ³, Eduardo Eyras The discovery potential of RNA processing profiles published pages: e15-e15, ISSN: 0305-1048, DOI: 10.1093/nar/gkx1115	Nucleic Acids Research 46/3	2020-04-23
2017	Rafael C. JimÃ©nez, Mateusz Kuzak, Monther Alhamdoosh, Michelle Barker, BÃ©rÃ©nice Batut, Mikael Borg, Salvador Capella-Gutierrez, Neil Chue Hong, Martin Cook, Manuel Corpas, Madison Flannery, Leyla Garcia, Josep Ll. GelpÃ, Simon Gladman, Carole Goble, Montserrat GonzÃ¡lez Ferreiro, Alejandra Gonzalez-Beltran, Philippa C. Griffin, BjÃ¶rn GrÃ¼ning, Jonas Hagberg, Petr Holub, Rob Hooft, Jon Ison, D Four simple recommendations to encourage best practices in research software published pages: 876, ISSN: 2046-1402, DOI: 10.12688/f1000research.11407.1	F1000Research 6	2020-04-23
2017	Marta R. Hidalgo, Cankut Cubuk, Alicia Amadoz, Francisco Salavert, JosÃ© Carbonell-Caballero, Joaquin Dopazo High throughput estimation of functional cell activities reveals disease mechanisms and predicts relevant clinical outcomes published pages: , ISSN: 1949-2553, DOI: 10.18632/oncotarget.14107	Oncotarget 8/3	2020-04-23
2016	Jon Ison, Kristoffer Rapacki, HervÃ© MÃ©nager, MatÃºÅ¡ KalaÅ¡, Emil Rydza, Piotr Chmura, Christian Anthon, Niall Beard, Karel Berka, Dan Bolser, Tim Booth, Anthony Bretaudeau, Jan Brezovsky, Rita Casadio, Gianni Cesareni, Frederik Coppens, Michael Cornell, Gianmauro Cuccuru, Kristian Davidsen, Gianluca Della Vedova, Tunca Dogan, Olivia Doppelt-Azeroual, Laura Emery, Elisabeth Gasteiger, Thomas Gat Tools and data services registry: a community effort to document bioinformatics resources published pages: D38-D47, ISSN: 0305-1048, DOI: 10.1093/nar/gkv1116	Nucleic Acids Research 44/D1	2020-04-23
2017	Alba GutiÃ©rrez-SacristÃ¡n, Ã€lex Bravo, Marta Portero-Tresserra, Olga Valverde, Antonio Armario, M.C. Blanco-GandÃa, Adriana FarrÃ©, Lierni FernÃ¡ndez-Ibarrondo, Francina Fonseca, JesÃºs Giraldo, Angela Leis, Anna ManÃ©, M.A. Mayer, Sandra Montagud-Romero, Roser Nadal, Jordi Ortiz, Francisco Javier Pavon, Ezequiel JesÃºs Perez, Marta RodrÃguez-Arias, Antonia Serrano, Marta Torrens, Vincent Warn Text mining and expert curation to develop a database on psychiatric diseases and their genes published pages: , ISSN: 1758-0463, DOI: 10.1093/database/bax043	Database 2017/1	2020-04-23
2016	Mark D. Wilkinson, Michel Dumontier, IJsbrand Jan Aalbersberg, Gabrielle Appleton, Myles Axton, Arie Baak, Niklas Blomberg, Jan-Willem Boiten, Luiz Bonino da Silva Santos, Philip E. Bourne, Jildau Bouwman, Anthony J. Brookes, Tim Clark, MercÃ¨ Crosas, Ingrid Dillo, Olivier Dumon, Scott Edmunds, Chris T. Evelo, Richard Finkers, Alejandra Gonzalez-Beltran, Alasdair J.G. Gray, Paul Groth, Carole Gobl The FAIR Guiding Principles for scientific data management and stewardship published pages: , ISSN: 2052-4463, DOI: 10.1038/sdata.2016.18	Sci Data	2020-04-23
2018	Adam-Blondon, Anne-FranÃ§oise; Chaves, InÃªs; Coppens, Friederik; Costa, Bruno; Finkers, Richard; Horro, Carlos; Kersey, Paul; Mihotey, Celia; Miguel, Celia; Papoutsoglu, Evangelia; Pommier, Cyril; Ramsak, Ziva Datasets annotated for at least 1 woody plant, cereal and solanaceous species; genotype, phenotype and sample metadata submitted to appropriate public archives published pages: , ISSN: , DOI: 10.5281/zenodo.1321902		2020-04-23
2016	JiÅ™Ã DamborskÃ½; Jaroslav Zendulka; MiloÅ¡ Musil; Jan Å touraÄ; Jaroslav Bendl; Jan BrezovskÃ½ PredictSNP2: A Unified Platform for Accurately Evaluating SNP Effects by Exploiting the Different Characteristics of Variants in Distinct Genomic Regions. published pages: , ISSN: 1553-734X, DOI: 10.1371/journal.pcbi.1004962	PLoS Computational Biology 1	2020-04-23
2016	Dylan Spalding; Helen Parkinson; Jordi Rambla; Niclas Jareborg; Abdulrahman Azab; Ilkka Lappalainen; Jeff Almaida-King; Alexander Senf; Saif Ur-Rehman Requirements analysis document published pages: , ISSN: 0000-0000, DOI: 10.5281/zenodo.61414	Zenodo	2020-04-23
2016	D. Digles, B. Zdrazil, J.-M. Neefs, H. Van Vlijmen, C. Herhaus, A. Caracoti, J. Brea, B. RoibÃ¡s, M. I. Loza, N. Queralt-Rosinach, L. I. Furlong, A. Gaulton, L. Bartek, S. Senger, C. Chichester, O. Engkvist, C. T. Evelo, N. I. Franklin, D. Marren, G. F. Ecker, E. Jacoby Open PHACTS computational protocols for in silico target validation of cellular phenotypic screens: knowing the knowns published pages: 1237-1244, ISSN: 2040-2503, DOI: 10.1039/C6MD00065G	Med. Chem. Commun. 7/6	2020-04-23
2017	Janet PiÃ±ero, Ã€lex Bravo, NÃºria Queralt-Rosinach, Alba GutiÃ©rrez-SacristÃ¡n, Jordi Deu-Pons, Emilio Centeno, Javier GarcÃa-GarcÃa, Ferran Sanz, Laura I. Furlong DisGeNET: a comprehensive platform integrating information on human disease-associated genes and variants published pages: D833-D839, ISSN: 0305-1048, DOI: 10.1093/nar/gkw943	Nucleic Acids Research 45/D1	2020-04-23
2018	Sergio Diaz-del-Pino, Oswaldo Trelles, Juan Falgueras mORCA: ubiquitous access to life science web services published pages: , ISSN: 1471-2164, DOI: 10.1186/s12864-018-4439-x	BMC Genomics 19/1	2020-04-23
2018	Stockinger, Heinz; Barlow, Mary; Cook, Chuck; Drysdale, Rachel; Gasteiger, Elisabeth; Kim, Jee-Hyub; Lopez, Rodrigo; Redaschi, Nicole; Teixeira, Daniel; Durinx, Christine; McEntyre, Johanna Plan for collation of metrics and quality data at the ELIXIR Hub published pages: , ISSN: , DOI: 10.5281/zenodo.1194123		2020-04-23
2016	Haydee Artaza, Neil Chue Hong, Manuel Corpas, Angel Corpuz, Rob Hooft, Rafael C. Jimenez, Brane LeskoÅ¡ek, Brett G. Olivier, Jan Stourac, Radka SvobodovÃ¡ VaÅ™ekovÃ¡, Thomas Van Parys, Daniel Vaughan Top 10 metrics for life science software good practices published pages: 2000, ISSN: 2046-1402, DOI: 10.12688/f1000research.9206.1	F1000Research 5	2020-04-23
2017	Juan Antonio VizcaÃno, Mathias Walzer, Rafael C. JimÃ©nez, Wout Bittremieux, David BouyssiÃ©, Christine Carapito, Fernando Corrales, Myriam Ferro, Albert J.R. Heck, Peter Horvatovich, Martin Hubalek, Lydie Lane, Kris Laukens, Fredrik Levander, Frederique Lisacek, Petr Novak, Magnus Palmblad, Damiano Piovesan, Alfred PÃ¼hler, Veit SchwÃ¤mmle, Dirk Valkenborg, Merlijn van Rijswijk, Jiri Vondrasek, A community proposal to integrate proteomics activities in ELIXIR published pages: 875, ISSN: 2046-1402, DOI: 10.12688/f1000research.11751.1	F1000Research 6	2020-04-23
2017	Antonija Kuzmanic, Ludovico Sutto, Giorgio Saladino, Angel R Nebreda, Francesco L Gervasio, Modesto Orozco Changes in the free-energy landscape of p38Î± MAP kinase through its canonical activation and binding events as studied by enhanced molecular dynamics simulations published pages: , ISSN: 2050-084X, DOI: 10.7554/eLife.22175	eLife 6	2020-04-23
2017	Segura, Joan; Sanchez-Garcia, Ruben; Martinez, Marta; Cuenca-Alba, Jesus; Tabas-Madrid, Daniel; Sorzano, C.O.S; Carazo, JM 3DBIONOTES v2.0: a web server for the automatic annotation of macromolecular structures published pages: , ISSN: , DOI: 10.5281/zenodo.1038018		2020-04-23
2018	Alexandre Almeida, Alex L Mitchell, Aleksandra Tarkowska, Robert D Finn Benchmarking taxonomic assignments based on 16S rRNA gene profiling of the microbiota from commonly sampled environments published pages: , ISSN: 2047-217X, DOI: 10.1093/gigascience/giy054	GigaScience 7/5	2020-04-23
2018	Inge Alexander Raknes, Lars Ailo Bongo META-pipe Authorization service published pages: 32, ISSN: 2046-1402, DOI: 10.12688/f1000research.13256.2	F1000Research 7	2020-04-23
2017	Carole Goble; Rafael Jimenez; Alasdair Gray; Niall Beard; Giuseppe Profiti; Norman Morrison Bioschemas.org published pages: , ISSN: , DOI: 10.7490/f1000research.1114493.1		2020-04-23
2018	LukÃ¡Å¡ Pravda, David Sehnal, Dominik TouÅ¡ek, Veronika NavrÃ¡tilovÃ¡, VÃ¡clav Bazgier, Karel Berka, Radka SvobodovÃ¡Â VaÅ™ekovÃ¡, Jaroslav KoÄa, Michal Otyepka MOLEonline: a web-based tool for analyzing channels, tunnels and pores (2018 update) published pages: W368-W373, ISSN: 0305-1048, DOI: 10.1093/nar/gky309	Nucleic Acids Research 46/W1	2020-04-23
2018	Trotta, Jean-RÃ©mi; Laurie, Steve; Matalonga, Leslie; Gut, Marta; Beltran, Sergi; Gut, Ivo G. ELIXIR-EXCELERATE D8.6: Documentation on adequate quality reporting standards for genomics datasets published pages: , ISSN: , DOI: 10.5281/zenodo.3209549		2020-04-23
2019	Carole Goble; Sarah Cohen-Boulakia; Daniel Schober; Kristian Peters; Stian Soiland-Reyes; Daniel Garijo; Yolanda Gil; Michael R. Crusoe FAIR Computational Workflows published pages: , ISSN: , DOI: 10.5281/zenodo.2642530		2020-04-23
2019	Hooft, Rob; Goble, Carole; Evelo, Chris; Roos, Marco; Sansone, Susanna; Ehrhart, Friederike; Kuzak, Mateusz; Carta, Claudio; Parkinson, Helen; Jansen, Mascha; Mons, Barend ELIXIR-EXCELERATE D5.3: Bring Your Own Data (BYOD) published pages: , ISSN: , DOI: 10.5281/zenodo.3207809		2020-04-23
2017	Sergio DÃaz-del-Pino, Juan Falgueras, Esteban Perez-Wohlfeil, Oswaldo Trelles mORCA: sailing bioinformatics world with mobile devices published pages: 869-870, ISSN: 1367-4803, DOI: 10.1093/bioinformatics/btx673	Bioinformatics 34/5	2020-04-23
2019	Finn, Robert; Mitchell, Alex; Cochrane, Guy; Burgin, Josephine; Willassen, Nils Peder ELIXIR-EXCELERATE D6.4: Report on assessment criteria and standardisation of metagenome assembled genomes (MAGs) from Marine samples published pages: , ISSN: , DOI: 10.5281/zenodo.3234520		2020-04-23
2019	Mitchell, Alex; Scheremetjew, Maxim; De Moro, Gianluca; Fosso, Bruno; Santamaria, Monica; Pesole, Graziano; Raj, Shriya; Bongo, Lars Ailo; Willassen, Nils Peder; Finn, Robert D. ELIXIR-EXCELERATE D6.3: Report describing a set of tools, pipelines and search engine for interrogation of marine metagenomic data. published pages: , ISSN: , DOI: 10.5281/zenodo.3228302		2020-04-23
2019	Gut, Ivo G.; Beltran, Sergi; Roos, Marco; Blomberg, Niklas; Scollen, Serena; Matalonga, Leslie; Saunders, Gary ELIXIR-EXCELERATE D8.7: Options for sustainability of RD-Connect within the scope of ELIXIR published pages: , ISSN: , DOI: 10.5281/zenodo.3228294		2020-04-23
2017	GaÃ«l Manes, Willy Joly, Thomas Guignard, Vasily Smirnov, Sylvie Berthemy, BÃ©atrice Bocquet, Isabelle Audo, Christina Zeitz, JosÃ© Sahel, Chantal Cazevieille, Audrey SÃ©nÃ©chal, Jean-FranÃ§ois Deleuze, HÃ©lÃ¨ne BlanchÃ©-Koch, Anne Boland, Patrick Carroll, David GeneviÃ¨ve, Xavier Zanlonghi, Carl Arndt, Christian P Hamel, Sabine Defoort-Dhellemmes, Isabelle Meunier A novel duplication of PRMD13 causes North Carolina macular dystrophy: overexpression of PRDM13 orthologue in drosophila eye reproduces the human phenotype published pages: 4367-4374, ISSN: 0964-6906, DOI: 10.1093/hmg/ddx322	Human Molecular Genetics 26/22	2020-04-23
2019	Pelletier, Eric; Corre, Erwan; Niang, Guita; Meng, Arnaud; Hoebeke, Mark; Finn, Robert ELIXIR-EXCELERATE D6.5: Improvement and Application of Eukaryotic Gene catalogue published pages: , ISSN: , DOI: 10.5281/zenodo.3234522		2020-04-23
2019	Leskosek, Brane; Matalonga, Leslie; Beltran, Sergi; Roos, Marco ELIXIR-EXCELERATE D8.5: Report on the ELIXIR workshops organized with the Rare Diseases communities published pages: , ISSN: , DOI: 10.5281/zenodo.3234533		2020-04-23
2018	McEntyre, Jo; Venkatesan, Aravind; Gobeill Julien; Piovesan, Damiano; Tosatto, Silvio; Ruch, Patrick 3.2 A report describing the semantically enriched Europe PMC that links literature to ELIXIR Core resource data, exemplified by GeneRif annotations published pages: , ISSN: , DOI: 10.5281/zenodo.1452442		2020-04-23
2018	Jacobsen, Annika; Thompson, Mark; Hanauer, Marc; Sergi, Beltran; Gray, Alasdair; Juty, Nick; Ehrhart, Friederike; Evelo, Chris D8.2 Documentation of the tools for the data manipulation and standard conversions in the rare-disease field published pages: , ISSN: , DOI: 10.5281/zenodo.1452468		2020-04-23
2018	Newhouse, Steven; NyrÃ¶nen, Tommi; Matyska, Ludek; ELIXIR Compute platform community D4.3 The ELIXIR Compute Platform: A Technical Services Roadmap for supporting Life Science Research in Europe published pages: , ISSN: , DOI: 10.5281/zenodo.1457169		2020-04-23
2018	Gelpi Ll., Josep; MÂª. FernÃ¡ndez, Jose; Sundesha, Vicky; Repchevsky; Haas, Juergen D2.2 A report on the coordination with WP1 on the incorporation of monitoring statistics and benchmarking results in registry releases published pages: , ISSN: , DOI: 10.5281/zenodo.1452561		2020-04-23
2018	Capella-Gutierrez, Salvador; Haas, Juergen; Ll. GelpÃ, Josep; MÂª. FernÃ¡ndez, Jose; Garrayo, Javier D2.3 A report on the features and nature of novel data which are needed within online benchmarking experiments in different subareas published pages: , ISSN: , DOI: 10.5281/zenodo.1452425		2020-04-23
2018	Rustici, Gabriella; Gurwitz, Kim; Louisa, Bellis; ELIXIR Training community 11.1 Deliver the identified evaluation systems and good practice guidelines for training. Deliver a TeSS platform and identify e-learning solutions published pages: , ISSN: , DOI: 10.5281/zenodo.1453021		2020-04-23
2018	Joaquim Aguirre-Plans, Janet PiÃ±ero, JÃ¶rg Menche, Ferran Sanz, Laura Furlong, Harald Schmidt, Baldo Oliva, Emre Guney Proximal Pathway Enrichment Analysis for Targeting Comorbid Diseases via Network Endopharmacology published pages: 61, ISSN: 1424-8247, DOI: 10.3390/ph11030061	Pharmaceuticals 11/3	2020-04-23
2018	Miguel, CÃ©lia; Pommier, Cyril; Finkers, Richard; Coppens, Frederik; Bolser, Dan D7.2 Phenotypic data exposed through integrating API by all participants published pages: , ISSN: , DOI: 10.5281/zenodo.1452452		2020-04-23
2018	Goble, Carol; Evelo, Chris; Parkinson, Helen; ELIXIR Interoperability community D5.1 Interoperability Implementation Regulations. published pages: , ISSN: , DOI: 10.5281/zenodo.1452415		2020-04-23
2018	de la Torre, Sabela; Moldes, Mauricio; Rambla, Jordi D9.2 Report on implementation of submissions interface and API published pages: , ISSN: , DOI: 10.5281/zenodo.1452480		2020-04-23
2018	Spalding, Dylan; Rambla, Jordi; TÃ¶rnroos, Juha; Leinonen, Jaakko; Linden, Mikael; Human data community D9.5 Report on implementation of ELSI and policy consideration for controlled access data published pages: , ISSN: , DOI: 10.5281/zenodo.1452470		2020-04-23
2018	de la Torre, Sabela; Lloret-Villas, Audald; Rambla, Jordi D9.3 Report on implementation of value-added user applications and cohort integration published pages: , ISSN: , DOI: 10.5281/zenodo.1452472		2020-04-23

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The information about "ELIXIR-EXCELERATE" are provided by the European Opendata Portal: CORDIS opendata.