Explore the words cloud of the BUNGEE-TOOLS project. It provides you a very rough idea of what is the project "BUNGEE-TOOLS" about.
The following table provides information about the project.
Coordinator |
UNIVERSITY COLLEGE LONDON
Organization address contact info |
Coordinator Country | United Kingdom [UK] |
Project website | https://sites.google.com/site/jeiglesias/bungee-tools |
Total cost | 1˙450˙075 € |
EC max contribution | 1˙450˙075 € (100%) |
Programme |
1. H2020-EU.1.1. (EXCELLENT SCIENCE - European Research Council (ERC)) |
Code Call | ERC-2015-STG |
Funding Scheme | ERC-STG |
Starting year | 2016 |
Duration (year-month-day) | from 2016-09-01 to 2021-08-31 |
Take a look of project's partnership.
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1 | UNIVERSITY COLLEGE LONDON | UK (LONDON) | coordinator | 1˙450˙075.00 |
Recent advances in magnetic resonance (MR) acquisition technology are providing us with images of the human brain of increasing detail and resolution. While these images hold promise to greatly increase our understanding of such a complex organ, the neuroimaging community relies on tools (e.g. SPM, FSL, FreeSurfer) which, being over a decade old, were designed to work at much lower resolutions. These tools do not consider brain substructures that are visible in present-day scans, and this inability to capitalize on the vast improvement of MR is hampering progress in the neuroimaging field.
In this ambitious project, which lies at the nexus of medical histology, neuroscience, biomedical imaging, computer vision and statistics, we propose to build a set of next-generation computational tools that will enable neuroimaging studies to take full advantage of the increased resolution of modern MR technology. The core of the tools will be an ultra-high resolution probabilistic atlas of the human brain, built upon multimodal data combining from histology and ex vivo MR. The resulting atlas will be used to analyze in vivo brain MR scans, which will require the development of Bayesian segmentation methods beyond the state of the art.
The developed tools, which will be made freely available to the scientific community, will enable the analysis of MR data at a superior level of structural detail, opening completely new opportunities of research in neuroscience. Therefore, we expect the tools to have a tremendous impact on the quest to understand the human brain (in health and in disease), and ultimately on public health and the economy.
year | authors and title | journal | last update |
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2018 |
Juan Eugenio Iglesias, Shauna Crampsie, Catherine Strand, Mohamed Tachrount, David L Thomas, Janice L Holton Effect of Fluorinert on the Histological Properties of Formalin-Fixed Human Brain Tissue published pages: 1085-1090, ISSN: 0022-3069, DOI: 10.1093/jnen/nly098 |
Journal of Neuropathology & Experimental Neurology 77/12 | 2019-05-27 |
2019 |
Martina Bocchetta, Juan Eugenio Iglesias, David M. Cash, Jason D. Warren, Jonathan D. Rohrer Amygdala subnuclei are differentially affected in the different genetic and pathological forms of frontotemporal dementia published pages: 136-141, ISSN: 2352-8729, DOI: 10.1016/j.dadm.2018.12.006 |
Alzheimer\'s & Dementia: Diagnosis, Assessment & Disease Monitoring 11 | 2019-05-27 |
2018 |
Ignacio Arganda-Carreras, Tudor Manoliu, Nicolas Mazuras, Florian Schulze, Juan E. Iglesias, Katja Bühler, Arnim Jenett, François Rouyer, Philippe Andrey A Statistically Representative Atlas for Mapping Neuronal Circuits in the Drosophila Adult Brain published pages: , ISSN: 1662-5196, DOI: 10.3389/fninf.2018.00013 |
Frontiers in Neuroinformatics 12 | 2019-05-27 |
2018 |
Sebastiano Ferraris, Johannes van der Merwe, Lennart Van Der Veeken, Ferran Prados, Juan-Eugenio Iglesias, Andrew Melbourne, Marco Lorenzi, Marc Modat, Willy Gsell, Jan Deprest, Tom Vercauteren A magnetic resonance multi-atlas for the neonatal rabbit brain published pages: 187-198, ISSN: 1053-8119, DOI: 10.1016/j.neuroimage.2018.06.029 |
NeuroImage 179 | 2019-05-27 |
2019 |
Martina Bocchetta, Juan Eugenio Iglesias, Lucy L. Russell, Caroline V. Greaves, Charles R. Marshall, Marzia A. Scelsi, David M. Cash, Sebastien Ourselin, Jason D. Warren, Jonathan D. Rohrer Segmentation of medial temporal subregions reveals early right-sided involvement in semantic variant PPA published pages: , ISSN: 1758-9193, DOI: 10.1186/s13195-019-0489-9 |
Alzheimer\'s Research & Therapy 11/1 | 2019-09-17 |
2019 |
William Stewart, Kieren Allinson, Safa Al-Sarraj, Corbin Bachmeier, Karen Barlow, Antonio Belli, Mark P Burns, Alan Carson, Fiona Crawford, Kristen Dams-O\'Connor, Ramon Diaz-Arrastia, C Edward Dixon, Brian L Edlow, Scott Ferguson, Bruce Fischl, Rebecca D Folkerth, Steve Gentleman, Christopher C Giza, M Sean Grady, Adel Helmy, Mark Herceg, Janice L Holton, David Howell, Peter J Hutchinson, Diego Iacono, Juan E Iglesias, Milos D Ikonomovic, Victoria E Johnson, C Dirk Keene, Julia K Kofler, Vassilis E Koliatsos, Edward B Lee, Harvey Levin, Jonathan Lifshitz, Helen Ling, David J Loane, Seth Love, Andrew IR Maas, Niklas Marklund, Christina L Master, Damien M McElvenny, David F Meaney, David K Menon, Thomas J Montine, Benoit Mouzon, Elliott J Mufson, Joseph O Ojo, Mayumi Prins, Tamas Revesz, Craig W Ritchie, Colin Smith, Richard Sylvester, Cheuk Y Tang, John Q Trojanowski, Kathryn Urankar, Robert Vink, Cheryl Wellington, Elisabeth A Wilde, Lindsay Wilson, Keith Yeates, Douglas H Smith Primum non nocere: a call for balance when reporting on CTE published pages: 231-233, ISSN: 1474-4422, DOI: 10.1016/s1474-4422(19)30020-1 |
The Lancet Neurology 18/3 | 2019-05-10 |
2018 |
Lyon W. Chen, Delin Sun, Sarah L. Davis, Courtney C. Haswell, Emily L. Dennis, Chelsea A. Swanson, Christopher D. Whelan, Boris Gutman, Neda Jahanshad, Juan Eugenio Iglesias, Paul Thompson, H. Ryan Wagner, Philipp Saemann, Kevin S. LaBar, Rajendra A. Morey Smaller hippocampal CA1 subfield volume in posttraumatic stress disorder published pages: 1018-1029, ISSN: 1091-4269, DOI: 10.1002/da.22833 |
Depression and Anxiety 35/11 | 2019-05-10 |
2018 |
Juan Eugenio Iglesias, Marc Modat, Loïc Peter, Allison Stevens, Roberto Annunziata, Tom Vercauteren, Ed Lein, Bruce Fischl, Sebastien Ourselin Joint registration and synthesis using a probabilistic model for alignment of MRI and histological sections published pages: 127-144, ISSN: 1361-8415, DOI: 10.1016/j.media.2018.09.002 |
Medical Image Analysis 50 | 2019-05-10 |
2018 |
Juan Eugenio Iglesias, Ricardo Insausti, Garikoitz Lerma-Usabiaga, Martina Bocchetta, Koen Van Leemput, Douglas N. Greve, Andre van der Kouwe, Bruce Fischl, César Caballero-Gaudes, Pedro M. Paz-Alonso A probabilistic atlas of the human thalamic nuclei combining ex vivo MRI and histology published pages: 314-326, ISSN: 1053-8119, DOI: 10.1016/j.neuroimage.2018.08.012 |
NeuroImage 183 | 2019-05-10 |
2018 |
Martina Bocchetta, Juan Eugenio Iglesias, Marzia A. Scelsi, David M. Cash, M. Jorge Cardoso, Marc Modat, Andre Altmann, Sebastien Ourselin, Jason D. Warren, Jonathan D. Rohrer Hippocampal Subfield Volumetry: Differential Pattern of Atrophy in Different Forms of Genetic Frontotemporal Dementia published pages: 497-504, ISSN: 1387-2877, DOI: 10.3233/JAD-180195 |
Journal of Alzheimer\'s Disease 64/2 | 2019-05-10 |
2017 |
New Fei Ho, Daphne J Holt, Mike Cheung, Juan Eugenio Iglesias, Alex Goh, Mingyuan Wang, Joseph KW Lim, Joshua de Souza, Joann S Poh, Yuen Mei See, Alison R Adcock, Stephen J Wood, Michael WL Chee, Jimmy Lee, Juan Zhou Progressive Decline in Hippocampal CA1 Volume in Individuals at Ultra-High-Risk for Psychosis Who Do Not Remit: Findings from the Longitudinal Youth at Risk Study published pages: 1361-1370, ISSN: 0893-133X, DOI: 10.1038/npp.2017.5 |
Neuropsychopharmacology 42/6 | 2019-06-19 |
2017 |
Z.M. Saygin, D. Kliemann, J.E. Iglesias, A.J.W. van der Kouwe, E. Boyd, M. Reuter, A. Stevens, K. Van Leemput, A. McKee, M.P. Frosch, B. Fischl, J.C. Augustinack High-resolution magnetic resonance imaging reveals nuclei of the human amygdala: manual segmentation to automatic atlas published pages: 370-382, ISSN: 1053-8119, DOI: 10.1016/j.neuroimage.2017.04.046 |
NeuroImage 155 | 2019-06-19 |
2017 |
Juan Eugenio Iglesias Globally Optimal Coupled Surfaces for Semi-automatic Segmentation of Medical Images published pages: 610-621, ISSN: , DOI: 10.1007/978-3-319-59050-9_48 |
International Conference on Information Processing in Medical Imaging | 2019-06-19 |
2017 |
New Fei Ho, Daphne J Holt, Mike Cheung, Juan Eugenio Iglesias, Alex Goh, Mingyuan Wang, Joseph KW Lim, Joshua de Souza, Joann S Poh, Yuen Mei See, Alison R Adcock, Stephen J Wood, Michael WL Chee, Jimmy Lee, Juan Zhou Progressive Decline in Hippocampal CA1 Volume in Individuals at Ultra-High-Risk for Psychosis Who Do Not Remit: Findings from the Longitudinal Youth at Risk Study published pages: 1361-1370, ISSN: 0893-133X, DOI: 10.1038/npp.2017.5 |
Neuropsychopharmacology 42/6 | 2019-05-10 |
2018 |
Jonas Pichat, Juan Eugenio Iglesias, Tarek Yousry, Sébastien Ourselin, Marc Modat A Survey of Methods for 3D Histology Reconstruction published pages: , ISSN: 1361-8415, DOI: 10.1016/j.media.2018.02.004 |
Medical Image Analysis | 2019-06-19 |
2017 |
Iman Aganj, Juan Eugenio Iglesias, Martin Reuter, Mert Rory Sabuncu, Bruce Fischl Mid-space-independent deformable image registration published pages: 158-170, ISSN: 1053-8119, DOI: 10.1016/j.neuroimage.2017.02.055 |
NeuroImage 152 | 2019-06-19 |
2018 |
Marcel Tella-Amo, Loic Peter, Dzhoshkun I. Shakir, Jan Deprest, Danail Stoyanov, Juan Eugenio Iglesias, Tom Vercauteren, Sebastien Ourselin Probabilistic visual and electromagnetic data fusion for robust drift-free sequential mosaicking: application to fetoscopy published pages: 1, ISSN: 2329-4302, DOI: 10.1117/1.JMI.5.2.021217 |
Journal of Medical Imaging 5/02 | 2019-06-19 |
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