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InCell SIGNED

High speed AFM imaging of molecular processes inside living cells

Total Cost €

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EC-Contrib. €

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Partnership

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 InCell project word cloud

Explore the words cloud of the InCell project. It provides you a very rough idea of what is the project "InCell" about.

tapping    confocal    direct    living    environment    resonance    thermal    functional    force    viral    structural    inside    observation    networks    resolution    combined    vesicular    interactions    microfabricated    pore    area    unfortunately    limited    guide    leak    encased    microscopy    fundamental    generation    deflection    pits    viscous    lattice    bio    onto    assembly    mode    plasma    optical    minimally    single    possibilities    hs    biology    first    dream    pt    barrel    photo    native    extraction    stability    time    coated    causing    subtracted    cantilever    ort    true    changer    invasive    signalling    lab    clamp    fluids    tool    cells    signal    imaging    dynamics    answer    kinetics    patch    nuclear    technique    nanoscale    incell    closest    cytosol    bacterial    fluid    nanometre    shell    molecular    atomic    transport    clathrin    seals    off    enter    tip    parasitic    game    outside    cell    speed    double    afm    coat    membrane    exists    questions    infection    interaction    revolutionize    endocytosis    myriad    remedy   

Project "InCell" data sheet

The following table provides information about the project.

Coordinator
ECOLE POLYTECHNIQUE FEDERALE DE LAUSANNE 

Organization address
address: BATIMENT CE 3316 STATION 1
city: LAUSANNE
postcode: 1015
website: www.epfl.ch

contact info
title: n.a.
name: n.a.
surname: n.a.
function: n.a.
email: n.a.
telephone: n.a.
fax: n.a.

 Coordinator Country Switzerland [CH]
 Total cost 1˙999˙925 €
 EC max contribution 1˙999˙925 € (100%)
 Programme 1. H2020-EU.1.1. (EXCELLENT SCIENCE - European Research Council (ERC))
 Code Call ERC-2017-COG
 Funding Scheme ERC-COG
 Starting year 2018
 Duration (year-month-day) from 2018-04-01   to  2023-03-31

 Partnership

Take a look of project's partnership.

# participants  country  role  EC contrib. [€] 
1    ECOLE POLYTECHNIQUE FEDERALE DE LAUSANNE CH (LAUSANNE) coordinator 1˙999˙925.00

Map

 Project objective

Imaging the inside of living cells with single nanometre resolution has been a long-standing dream in bio-microscopy. Direct observation of changes to molecular networks inside of living cells would revolutionize the way we study structural cell biology. Unfortunately, no such tool exists. Atomic force microscopy (AFM) is the closest we have, to nanoscale functional imaging of cells in their native, fluid environment. However, it is limited to imaging the outside of the cell. With InCell, I will remedy this by developing an AFM capable of imaging the inside of living cells. The approach is based on a microfabricated high speed AFM cantilever encased in a double barrel patch-clamp shell. The patch clamp shell seals onto the plasma membrane of the cell, so that the tip of the AFM cantilever can enter the cell without causing the cytosol to leak out. Parasitic interactions of the AFM tip with the cytosol will be subtracted from the cantilever deflection signal, using high speed photo-thermal off-resonance tapping (PT-ORT), a novel AFM mode we have recently developed in my lab. This allows the extraction of the true tip-sample interaction, even in viscous fluids. A dedicated InCell HS-AFM combined with confocal optical microscopy will be used to guide the InCell cantilever inside the cell to the area of interest. Using this minimally invasive technique we will study the formation of clathrin coated pits, a crucial part of endocytosis. By imaging for the first time the nanoscale dynamics of this process in living cells, we aim to answer fundamental questions about the clathrin coat assembly. We will characterize the kinetics, stability and force generation by the clathrin lattice. This will be the first example of how enabling nanoscale imaging inside living cells will be a game changer in cell biology. It will open up a myriad of possibilities for the study of vesicular transport, viral and bacterial infection, nuclear pore transport, cell signalling and many more.

 Publications

year authors and title journal last update
List of publications.
2019 Edward S. Parsons, George J. Stanley, Alice L. B. Pyne, Adrian W. Hodel, Adrian P. Nievergelt, Anaïs Menny, Alexander R. Yon, Ashlea Rowley, Ralf P. Richter, Georg E. Fantner, Doryen Bubeck, Bart W. Hoogenboom
Single-molecule kinetics of pore assembly by the membrane attack complex
published pages: , ISSN: 2041-1723, DOI: 10.1038/s41467-019-10058-7
Nature Communications 10/1 2019-12-16
2019 Adrian P. Nievergelt, Christoph Kammer, Charlène Brillard, Eva Kurisinkal, Maartje M. C. Bastings, Alireza Karimi, Georg E. Fantner
Large‐Range HS‐AFM Imaging of DNA Self‐Assembly through In Situ Data‐Driven Control
published pages: 1900031, ISSN: 2366-9608, DOI: 10.1002/smtd.201900031
Small Methods 2019-12-16
2019 Ke Liu, Chao Pan, Alexandre Kuhn, Adrian Pascal Nievergelt, Georg E. Fantner, Olgica Milenkovic, Aleksandra Radenovic
Detecting topological variations of DNA at single-molecule level
published pages: , ISSN: 2041-1723, DOI: 10.1038/s41467-018-07924-1
Nature Communications 10/1 2019-05-27
2018 Adrian Nievergelt, Charlène Brillard, Haig Eskandarian, John McKinney, Georg Fantner
Photothermal Off-Resonance Tapping for Rapid and Gentle Atomic Force Imaging of Live Cells
published pages: 2984, ISSN: 1422-0067, DOI: 10.3390/ijms19102984
International Journal of Molecular Sciences 19/10 2019-04-03
2018 Adrian P. Nievergelt, Niccolò Banterle, Santiago H. Andany, Pierre Gönczy, Georg E. Fantner
High-speed photothermal off-resonance atomic force microscopy reveals assembly routes of centriolar scaffold protein SAS-6
published pages: 696-701, ISSN: 1748-3387, DOI: 10.1038/s41565-018-0149-4
Nature Nanotechnology 13/8 2019-03-12

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The information about "INCELL" are provided by the European Opendata Portal: CORDIS opendata.

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