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GENE-SWitCH SIGNED

The regulatory GENomE of SWine and CHicken: functional annotation during development

Total Cost €

EC-Contrib. €

Partnership

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GENE-SWitCH project word cloud

Explore the words cloud of the GENE-SWitCH project. It provides you a very rough idea of what is the project "GENE-SWitCH" about.

genomes synergy annotation species community translation life activation fetus plan populations until pioneered conform predictive data weaning perturbations brings pig farm outreach resolution sectors standards time annotations chicken models diet pan innovative shared integrate genomic variation nutritional qtl gene switch epigenome datasets influence embryo cutting edge maternal effort productions industry world audience status valuable sequences academic genome epigenetic animal ongoing post sustainable stakeholders co global adult monogastric excellence creation persist genetic varies add validated paving true biotech environmental tissues expression strategies representing switches dynamics full faang benefit pigs functional underpinning breeding commercial evaluation considerably space poultry panel

Project "GENE-SWitCH" data sheet

The following table provides information about the project.

Coordinator	INSTITUT NATIONAL DE RECHERCHE POUR L'AGRICULTURE, L'ALIMENTATION ET L'ENVIRONNEMENT Organization address address: Rue De L'Universite 147 city: PARIS CEDEX 07 postcode: 75338 website: www.inra.fr contact info title: n.a. name: n.a. surname: n.a. function: n.a. email: n.a. telephone: n.a. fax: n.a.
Coordinator Country	France [FR]
Total cost	5˙999˙891 €
EC max contribution	5˙999˙886 € (100%)
Programme	1. H2020-EU.3.2.1.1. (Increasing production efficiency and coping with climate change, while ensuring sustainability and resilience) 2. H2020-EU.3.2.3.1. (Developing sustainable and environmentally-friendly fisheries)
Code Call	H2020-SFS-2018-2
Funding Scheme	RIA
Starting year	2019
Duration (year-month-day)	from 2019-07-01 to 2023-06-30

Partnership

Take a look of project's partnership.

#	participants	country	role	EC contrib. [€]
1	INSTITUT NATIONAL DE RECHERCHE POUR L'AGRICULTURE, L'ALIMENTATION ET L'ENVIRONNEMENT INSTITUT NATIONAL DE RECHERCHE POUR L'AGRICULTURE, L'ALIMENTATION ET L'ENVIRONNEMENT Organization address address: Rue De L'Universite 147 city: PARIS CEDEX 07 postcode: 75338 website: www.inra.fr contact info title: n.a. name: n.a. surname: n.a. function: n.a. email: n.a. telephone: n.a. fax: n.a.	FR (PARIS CEDEX 07)	coordinator	1˙195˙073.00
2	WAGENINGEN UNIVERSITY WAGENINGEN UNIVERSITY Organization address address: DROEVENDAALSESTEEG 4 city: WAGENINGEN postcode: 6708 PB website: http://www.wageningenur.nl/nl.htm contact info title: n.a. name: n.a. surname: n.a. function: n.a. email: n.a. telephone: n.a. fax: n.a.	NL (WAGENINGEN)	participant	971˙783.00
3	THE UNIVERSITY OF EDINBURGH THE UNIVERSITY OF EDINBURGH Organization address address: OLD COLLEGE, SOUTH BRIDGE city: EDINBURGH postcode: EH8 9YL website: www.ed.ac.uk contact info title: n.a. name: n.a. surname: n.a. function: n.a. email: n.a. telephone: n.a. fax: n.a.	UK (EDINBURGH)	participant	905˙523.00
4	EUROPEAN MOLECULAR BIOLOGY LABORATORY EUROPEAN MOLECULAR BIOLOGY LABORATORY Organization address address: Meyerhofstrasse 1 city: HEIDELBERG postcode: 69117 website: http://www.embl.de contact info title: n.a. name: n.a. surname: n.a. function: n.a. email: n.a. telephone: n.a. fax: n.a.	DE (HEIDELBERG)	participant	710˙478.00
5	DIAGENODE DIAGENODE Organization address address: RUE DU BOIS SAINT JEAN 3 LIEGE PARK SCIENCE city: SERAING postcode: 4102 website: www.diagenode.com contact info title: n.a. name: n.a. surname: n.a. function: n.a. email: n.a. telephone: n.a. fax: n.a.	BE (SERAING)	participant	548˙000.00
6	INSTITUT DE RECERCA I TECNOLOGIA AGROALIMENTARIES INSTITUT DE RECERCA I TECNOLOGIA AGROALIMENTARIES Organization address address: CTRA C-59 KM 12 TORRE MARIMON city: CALDES DE MONTBUI BARCELONA postcode: 8140 website: www.irta.es contact info title: n.a. name: n.a. surname: n.a. function: n.a. email: n.a. telephone: n.a. fax: n.a.	ES (CALDES DE MONTBUI BARCELONA)	participant	509˙992.00
7	HENDRIX GENETICS RESEARCH,TECHNOLOGY & SERVICES BV HENDRIX GENETICS RESEARCH,TECHNOLOGY & SERVICES BV Organization address address: SPOORSTRAAT 69 city: BOXMEER postcode: 5831 CK website: n.a. contact info title: n.a. name: n.a. surname: n.a. function: n.a. email: n.a. telephone: n.a. fax: n.a.	NL (BOXMEER)	participant	343˙743.00
8	UPPSALA UNIVERSITET UPPSALA UNIVERSITET Organization address address: VON KRAEMERS ALLE 4 city: UPPSALA postcode: 751 05 website: www.uu.se contact info title: n.a. name: n.a. surname: n.a. function: n.a. email: n.a. telephone: n.a. fax: n.a.	SE (UPPSALA)	participant	287˙500.00
9	INRA TRANSFERT SAS INRA TRANSFERT SAS Organization address address: RUE DU DOCTEUR FINLAY 28 city: PARIS postcode: 75015 website: www.inra-transfert.fr contact info title: n.a. name: n.a. surname: n.a. function: n.a. email: n.a. telephone: n.a. fax: n.a.	FR (PARIS)	participant	209˙750.00
10	EUROPEAN FORUM OF FARM ANIMAL BREEDERS EUROPEAN FORUM OF FARM ANIMAL BREEDERS Organization address address: DREIJENLAAN 2K 1060 1061 city: WAGENINGEN postcode: 6703 HA website: www.effab.info contact info title: n.a. name: n.a. surname: n.a. function: n.a. email: n.a. telephone: n.a. fax: n.a.	NL (WAGENINGEN)	participant	197˙357.00
11	FEDERAZIONE EUROPEA DI ZOOTECNICA FEDERAZIONE EUROPEA DI ZOOTECNICA Organization address address: VIA GIUSEPPE TOMASSETTI 3 A/1 city: ROMA postcode: 161 website: www.eaap.org contact info title: n.a. name: n.a. surname: n.a. function: n.a. email: n.a. telephone: n.a. fax: n.a.	IT (ROMA)	participant	120˙687.00

Map

Project objective

GENE-SWitCH aims to deliver new underpinning knowledge on the functional genomes of two main monogastric farm species (pig and chicken) and to enable immediate translation to the pig and poultry sectors. The activation status of functional genome sequences varies across time and space, and in response to environmental perturbations. In full coordination and synergy with global effort and ongoing projects of the Functional Annotation of ANimal Genomes (FAANG) community, we will characterize the dynamics (“switches”) of the functional genome from embryo (chicken) and fetus (pig) to adult life by targeting a panel of tissues relevant to sustainable production. New expression QTL data in pigs and existing high-resolution QTL data in chicken will be used for developing innovative genomic predictive models that integrate functional annotations, and these models will be validated in commercial pig and poultry populations. In addition, nutritional epigenetic data will allow evaluation of the influence of maternal diet on the epigenome of the pig fetus and whether such effects persist until post-weaning. These open-shared datasets will conform fully with FAANG standards and add valuable knowledge on genetic and epigenetic variation of functional elements to FAANG. A comprehensive plan of dissemination and outreach activities to a large audience of stakeholders will be implemented. The GENE-SWitCH consortium brings together partners representing pan-European excellence (including the academic institutions which pioneered FAANG) and world-leading animal breeding and biotech industry in a true co-creation effort. Overall, GENE-SWitCH will contribute to the global FAANG effort considerably, demonstrate how functional annotation of genomes can foster the advancement of genomic selection for immediate benefit to the breeding industry, and produce cutting-edge research paving the way to new studies and strategies for sustainable productions.

Deliverables

List of deliverables.
GENE-SWitCH Data Management Plan	Open Research Data Pilot	2020-04-25 13:33:44
Outreach, dissemination, and training plan	Documents, reports	2020-04-25 13:33:44

Take a look to the deliverables list in detail: detailed list of GENE-SWitCH deliverables.

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