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MSmed SIGNED

Mass spectrometric technology for next generation proteomics in systems medicine

Total Cost €

EC-Contrib. €

Partnership

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Outcomes and
results

MSmed project word cloud

Explore the words cloud of the MSmed project. It provides you a very rough idea of what is the project "MSmed" about.

area genomic separation not oriented disease tissues elucidations ena biomedicine drug instrumentation breakthroughs ten generation spectrometry routinely larger enrichment frag patient myriad automated gene multiplexed clinic workflow turn academia eco proteome bling laboratory organoids profiling body performance spectrometric levels quantify leaders strength workflows health technologies designates proteomics proteins multidimensional mechanisms clinical breakthrough track throughput prognosis generate made modifications industrial biologically biological mined data advancing machine improvement cells global isoforms expression industry human tionize medicine contexts identification mentation record sequencing community omic protein learning mass diagnosis systems urgent fluids vision representative powerful merged action ready platforms pioneering applicants revolu basis

Project "MSmed" data sheet

The following table provides information about the project.

Coordinator	KOBENHAVNS UNIVERSITET Organization address address: NORREGADE 10 city: KOBENHAVN postcode: 1165 website: www.ku.dk contact info title: n.a. name: n.a. surname: n.a. function: n.a. email: n.a. telephone: n.a. fax: n.a.
Coordinator Country	Denmark [DK]
Project website	http://www.nowebsite.none
Total cost	5˙038˙875 €
EC max contribution	3˙672˙625 € (73%)
Programme	1. H2020-EU.1.2.1. (FET Open)
Code Call	H2020-FETOPEN-2014-2015-RIA
Funding Scheme	RIA
Starting year	2015
Duration (year-month-day)	from 2015-12-01 to 2019-11-30

Partnership

Take a look of project's partnership.

#	participants	country	role	EC contrib. [€]
1	KOBENHAVNS UNIVERSITET KOBENHAVNS UNIVERSITET Organization address address: NORREGADE 10 city: KOBENHAVN postcode: 1165 website: www.ku.dk contact info title: n.a. name: n.a. surname: n.a. function: n.a. email: n.a. telephone: n.a. fax: n.a.	DK (KOBENHAVN)	coordinator	1˙403˙600.00
2	THERMO FISHER SCIENTIFIC (BREMEN) GMBH THERMO FISHER SCIENTIFIC (BREMEN) GMBH Organization address address: HANNA KUNATH STRASSE 11 city: BREMEN postcode: 28199 website: www.thermofisher.com contact info title: n.a. name: n.a. surname: n.a. function: n.a. email: n.a. telephone: n.a. fax: n.a.	DE (BREMEN)	participant	870˙000.00
3	UNIVERSITEIT UTRECHT UNIVERSITEIT UTRECHT Organization address address: HEIDELBERGLAAN 8 city: UTRECHT postcode: 3584 CS website: www.uu.nl contact info title: n.a. name: n.a. surname: n.a. function: n.a. email: n.a. telephone: n.a. fax: n.a.	NL (UTRECHT)	participant	700˙000.00
4	MAX-PLANCK-GESELLSCHAFT ZUR FORDERUNG DER WISSENSCHAFTEN EV MAX-PLANCK-GESELLSCHAFT ZUR FORDERUNG DER WISSENSCHAFTEN EV Organization address address: HOFGARTENSTRASSE 8 city: MUENCHEN postcode: 80539 website: n.a. contact info title: n.a. name: n.a. surname: n.a. function: n.a. email: n.a. telephone: n.a. fax: n.a.	DE (MUENCHEN)	participant	699˙025.00

Map

Project objective

Systems medicine designates the application of global approaches to human health and disease. Genomic technologies, especially next-generation sequencing, are already pioneering this new area. There is an urgent need to advance proteomics technologies to a similar level. This will help revolu¬tionize diagnosis and prognosis based on the expression levels and modifications of proteins in cells, tissues, organoids or body fluids. Our vision is to make mass spectrometry so robust and powerful that it will be present in every biological laboratory and in every clinic. The applicants are leaders in proteomics technologies from academia and industry and have an out-standing track-record in advancing both instrumentation as well as its application in biological and disease contexts. Here we come together to develop breakthrough technology capable of more than a factor ten improvement in parameters of performance of the mass spectrometric workflow, ena¬bling patient-oriented proteome profiling. The proteomics workflow will be automated, multiplexed and made ‘industrial strength’ - ready for high-throughput and in-depth clinical applications. Importantly, in addition to the identification of the main protein representative of a gene, we aim to routinely identify and quantify protein modifications and isoforms by using multidimensional approaches, including new separation, enrichment and frag¬mentation technologies. The breakthroughs aimed for will generate larger more biologically relevant data. This data will be merged with other ‘omic’ data and mined using machine learning technologies. Our results will establish the role mass spectrometry in systems medicine, making all workflows and mass spectrometry platforms available to the community. They will be used as the basis of myriad applications in biomedicine, even in the clinic. This in turn will lead to a new eco-system around improved diagnosis, elucidations of disease mechanisms and drug action.

Deliverables

List of deliverables.
LCMS time-scale compatible peptide and protein sequencing using hybrid fragmentation methods, with special applications into multiply modified larger peptides	Documents, reports	2019-05-03 16:53:16
Construction/coupling of UVPD to the latest Orbitrap instruments	Documents, reports	2019-05-03 16:53:42
Software module for comprehensive identification of PTMs, mutations and splice variants	Documents, reports	2019-05-03 16:44:40
MaxQuant summer school	Other	2019-05-03 16:44:41
Industrialized workflow with low CVs	Documents, reports	2019-05-03 16:44:39
Software module for multiplexed quantification of clinical samples	Documents, reports	2019-05-07 11:36:07
LCMS time-scale compatible UV-PD peptide and protein sequencing	Documents, reports	2019-05-07 11:36:08
Robust and reproducible sample prepaÂ¬ration protocols including MS instruÂ¬mentation and acquisition strat-egies for large-scale, quantitative PTM analysis from primary tissue samples such as patient biopsy material	Other	2019-05-07 11:36:04
Ethics check	Documents, reports	2019-05-07 11:36:02
Data Management Plan	Other	2019-05-07 11:36:02

Take a look to the deliverables list in detail: detailed list of MSmed deliverables.

Publications

List of publications.
year	authors and title	journal	last update
2019	Clement M. Potel, Miao-Hsia Lin, Nadine Prust, Henk W. P. van den Toorn, Albert J. R. Heck, Simone Lemeer Gaining Confidence in the Elusive Histidine Phosphoproteome published pages: 5542-5547, ISSN: 0003-2700, DOI: 10.1021/acs.analchem.9b00734	Analytical Chemistry 91/9	2020-01-30
2019	Jean-FranÃ§ois Greisch, Sem Tamara, Richard A. Scheltema, Howard W. R. Maxwell, Robert D. Fagerlund, Peter C. Fineran, Stephan Tetter, Donald Hilvert, Albert J. R. Heck Expanding the mass range for UVPD-based native top-down mass spectrometry published pages: 7163-7171, ISSN: 2041-6520, DOI: 10.1039/c9sc01857c	Chemical Science 10/30	2020-01-30
2019	Marta Murgia, Jing Tan, Philipp E. Geyer, Sophia Doll, Matthias Mann, Thomas Klopstock Proteomics of Cytochrome c Oxidase-Negative versus -Positive Muscle Fiber Sections in Mitochondrial Myopathy published pages: 3825-3834.e4, ISSN: 2211-1247, DOI: 10.1016/j.celrep.2019.11.055	Cell Reports 29/12	2020-01-29
2018	Miao-Hsia Lin, Clement M. Potel, Kamaleddin H. M. E. Tehrani, Albert J. R. Heck, Nathaniel I. Martin, Simone Lemeer A New Tool to Reveal Bacterial Signaling Mechanisms in Antibiotic Treatment and Resistance published pages: 2496-2507, ISSN: 1535-9476, DOI: 10.1074/mcp.ra118.000880	Molecular & Cellular Proteomics 17/12	2020-01-29
2018	Domenico Fasci, Hugo van Ingen, Richard A. Scheltema, Albert J. R. Heck Histone Interaction Landscapes Visualized by Crosslinking Mass Spectrometry in Intact Cell Nuclei published pages: 2018-2033, ISSN: 1535-9476, DOI: 10.1074/mcp.ra118.000924	Molecular & Cellular Proteomics 17/10	2020-01-30
2018	Oleg Klykov, Barbara Steigenberger, Sibel PektaÅŸ, Domenico Fasci, Albert J. R. Heck, Richard A. Scheltema Efficient and robust proteome-wide approaches for cross-linking mass spectrometry published pages: 2964-2990, ISSN: 1754-2189, DOI: 10.1038/s41596-018-0074-x	Nature Protocols 13/12	2020-01-30
2019	Tomislav ÄŒaval, Jing Zhu, Albert J.R. Heck Simply Extending the Mass Range in Electron Transfer Higher Energy Collisional Dissociation Increases Confidence in N-Glycopeptide Identification published pages: 10401-10406, ISSN: 0003-2700, DOI: 10.1021/acs.analchem.9b02125	Analytical Chemistry 91/16	2020-01-30
2019	Laura C. Demmers, Albert J. R. Heck, Wei Wu Pre-fractionation Extends but also Creates a Bias in the Detectable HLA Class Î™ Ligandome published pages: 1634-1643, ISSN: 1535-3893, DOI: 10.1021/acs.jproteome.8b00821	Journal of Proteome Research 18/4	2020-01-30
2018	Karli R. Reiding, Albert Bondt, Vojtech Franc, Albert J.R. Heck The benefits of hybrid fragmentation methods for glycoproteomics published pages: 260-268, ISSN: 0165-9936, DOI: 10.1016/j.trac.2018.09.007	TrAC Trends in Analytical Chemistry 108	2020-01-29
2018	David Y. Chiang, Katherina M. Alsina, Eleonora Corradini, Martin Fitzpatrick, Li Ni, Satadru K. Lahiri, Julia O. Reynolds, Xiaolu Pan, Larry Scott, Albert J.R. Heck, Xander H.T. Wehrens Rearrangement of the Protein Phosphatase 1 Interactome During Heart Failure Progression published pages: 1569-1581, ISSN: 0009-7322, DOI: 10.1161/circulationaha.118.034361	Circulation 138/15	2020-01-29
2018	Kristina B. Emdal, Anna-Kathrine Pedersen, Dorte B. Bekker-Jensen, Alicia Lundby, Shana Claeys, Katleen De Preter, Frank Speleman, Chiara Francavilla, Jesper V. Olsen Integrated proximal proteomics reveals IRS2 as a determinant of cell survival in ALK-driven neuroblastoma published pages: eaap9752, ISSN: 1937-9145, DOI: 10.1126/scisignal.aap9752	Science Signaling 11/557	2020-01-30
2018	Jing Zhu, Luc Garrigues, Henk Van den Toorn, Bernd Stahl, Albert J. R. Heck Discovery and Quantification of Nonhuman Proteins in Human Milk published pages: 225-238, ISSN: 1535-3893, DOI: 10.1021/acs.jproteome.8b00550	Journal of Proteome Research 18/1	2020-01-30
2019	Tanveer S. Batth, Maxim A. X. Tollenaere, Patrick RÃ¼ther, Alba Gonzalez-Franquesa, Bhargav S. Prabhakar, Simon Bekker-Jensen, Atul S. Deshmukh, Jesper V. Olsen Protein Aggregation Capture on Microparticles Enables Multipurpose Proteomics Sample Preparation published pages: 1027-1035, ISSN: 1535-9476, DOI: 10.1074/mcp.tir118.001270	Molecular & Cellular Proteomics 18/5	2020-01-30
2018	Clement M Potel, Miao-Hsia Lin, Albert J R Heck, Simone Lemeer Widespread bacterial protein histidine phosphorylation revealed by mass spectrometry-based proteomics published pages: 187-190, ISSN: 1548-7091, DOI: 10.1038/nmeth.4580	Nature Methods 15/3	2020-01-30
2019	Hecht, E.S., Scigelova, M., Eliuk, S. and Makarov, A. Fundamentals and Advances of Orbitrap Mass Spectrometry published pages: , ISSN: , DOI:	Encyclopedia of Analytical Chemistry	2020-01-29
2018	Sebastiaan C. de Graaf, Oleg Klykov, Henk van den Toorn, Richard A. Scheltema Cross-ID: Analysis and Visualization of Complex XLâ€“MS-Driven Protein Interaction Networks published pages: 642-651, ISSN: 1535-3893, DOI: 10.1021/acs.jproteome.8b00725	Journal of Proteome Research 18/2	2020-01-30
2019	Dorte B. Bekker-Jensen, Oliver M. Bernhardt, Alexander Hogrebe, Ana Martinez del Val, Lynn Verbeke, Tejas Gandhi, Christian D. Kelstrup, Lukas Reiter, Jesper V. Olsen Rapid and site-specific deep phosphoproteome profiling by data-independent acquisition (DIA) without the need for spectral libraries published pages: , ISSN: , DOI: 10.1101/657858	bioRxiv	2020-01-30
2019	Dorte B. Bekker-Jensen, Ana MartÃnez del Val, Sophia Steigerwald, Patrick RÃ¼ther, Kyle Fort, Tabiwang N. Arrey, Alexander Harder, Alexander Makarov, Jesper V. Olsen A Compact Quadrupole-Orbitrap Mass Spectrometer with FAIMS Interface Improves Proteome Coverage in Short LC Gradients published pages: , ISSN: , DOI: 10.1101/860643	bioRxiv	2020-01-30
2018	Clement M. Potel, Simone Lemeer, Albert J. R. Heck Phosphopeptide Fragmentation and Site Localization by Mass Spectrometry: An Update published pages: 126-141, ISSN: 0003-2700, DOI: 10.1021/acs.analchem.8b04746	Analytical Chemistry 91/1	2020-01-30
2019	Kelly A. Dingess, Henk W. P. van den Toorn, Marko Mank, Bernd Stahl, Albert J. R. Heck Toward an efficient workflow for the analysis of the human milk peptidome published pages: 1351-1363, ISSN: 1618-2642, DOI: 10.1007/s00216-018-01566-4	Analytical and Bioanalytical Chemistry 411/7	2020-01-30
2018	Vyacheslav Akimov, Inigo Barrio-Hernandez, Sten V. F. Hansen, Philip Hallenborg, Anna-Kathrine Pedersen, Dorte B. Bekker-Jensen, Michele Puglia, Stine D. K. Christensen, Jens T. Vanselow, Mogens M. Nielsen, Irina Kratchmarova, Christian D. Kelstrup, Jesper V. Olsen, Blagoy Blagoev UbiSite approach for comprehensive mapping of lysine and N-terminal ubiquitination sites published pages: 631-640, ISSN: 1545-9993, DOI: 10.1038/s41594-018-0084-y	Nature Structural & Molecular Biology 25/7	2020-01-30
2019	Tomislav ÄŒaval, Jing Zhu, Weihua Tian, Sanne Remmelzwaal, Zhang Yang, Henrik Clausen, Albert J.R. Heck Targeted Analysis of Lysosomal Directed Proteins and Their Sites of Mannose-6-phosphate Modification published pages: 16-27, ISSN: 1535-9476, DOI: 10.1074/mcp.ra118.000967	Molecular & Cellular Proteomics 18/1	2020-01-30
2018	Clement M. Potel, Domenico Fasci, Albert J.R. Heck Mix and match of the tumor metastasis suppressor Nm23 protein isoforms inÂ vitro and inÂ vivo published pages: 2856-2868, ISSN: 1742-464X, DOI: 10.1111/febs.14525	The FEBS Journal 285/15	2020-01-29
2019	Christoph Wichmann, Florian Meier, Sebastian Virreira Winter, Andreas-David Brunner, JÃ¼rgen Cox, Matthias Mann MaxQuant.Live Enables Global Targeting of More Than 25,000 Peptides published pages: 982-994, ISSN: 1535-9476, DOI: 10.1074/mcp.tir118.001131	Molecular & Cellular Proteomics 18/5	2020-01-30
2019	Barbara Steigenberger, Roland J. Pieters, Albert J. R. Heck, Richard A. Scheltema PhoX: An IMAC-Enrichable Cross-Linking Reagent published pages: 1514-1522, ISSN: 2374-7943, DOI: 10.1021/acscentsci.9b00416	ACS Central Science 5/9	2020-01-30
2017	Miia R. MÃ¤kelÃ¤, Ourdia Bouzid, Diogo Robl, Harm Post, Mao Peng, Albert Heck, Maarten Altelaar, Ronald P. de Vries Cultivation of Podospora anserina on soybean hulls results in an efficient enzyme cocktail for plant biomass hydrolysis published pages: 162-171, ISSN: 1871-6784, DOI: 10.1016/j.nbt.2017.02.002	New Biotechnology 37	2020-01-30
2019	Philipp E Geyer, Eugenia Voytik, Peter V Treit, Sophia Doll, Alisa Kleinhempel, Lili Niu, Johannes B MÃ¼ller, Marieâ€Luise Buchholtz, Jakob M Bader, Daniel Teupser, Lesca M Holdt, Matthias Mann Plasma Proteome Profiling to detect and avoid sampleâ€related biases in biomarker studies published pages: e10427, ISSN: 1757-4676, DOI: 10.15252/emmm.201910427	EMBO Molecular Medicine 11/11	2020-01-30
2019	Andrey Dyachenko, Sem Tamara, Albert J. R. Heck Distinct Stabilities of the Structurally Homologous Heptameric Co-Chaperonins GroES and gp31 published pages: 7-15, ISSN: 1044-0305, DOI: 10.1007/s13361-018-1910-5	Journal of The American Society for Mass Spectrometry 30/1	2020-01-30
2019	Alicia Lundby, Giulia Franciosa, Kristina B. Emdal, Jan C. Refsgaard, Sebastian P. Gnosa, Dorte B. Bekker-Jensen, Anna Secher, Svetlana R. Maurya, Indranil Paul, Blanca L. Mendez, Christian D. Kelstrup, Chiara Francavilla, Marie Kveiborg, Guillermo Montoya, Lars J. Jensen, Jesper V. Olsen Oncogenic Mutations Rewire Signaling Pathways by Switching Protein Recruitment to Phosphotyrosine Sites published pages: 543-560.e26, ISSN: 0092-8674, DOI: 10.1016/j.cell.2019.09.008	Cell 179/2	2020-01-30
2019	Lili Niu, Philipp E Geyer, Nicolai J Wewer Albrechtsen, Lise L Gluud, Alberto Santos, Sophia Doll, Peter V Treit, Jens J Holst, Filip K Knop, Tina VilsbÃ¸ll, Anders Junker, Stephan Sachs, Kerstin Stemmer, Timo D MÃ¼ller, Matthias H TschÃ¶p, Susanna M Hofmann, Matthias Mann Plasma proteome profiling discovers novel proteins associated with nonâ€alcoholic fatty liver disease published pages: e8793, ISSN: 1744-4292, DOI: 10.15252/msb.20188793	Molecular Systems Biology 15/3	2020-01-30
2019	Fabian Coscia, Sophia Doll, Jacob Mathias Bech, Andreas Mund, Ernst Lengyel, Jan Lindebjerg, Gunvor Iben Madsen, JosÃ© M. A. Moreira, Matthias Mann A streamlined mass spectrometry-based proteomics workflow for large scale FFPE tissue analysis published pages: , ISSN: , DOI: 10.1101/779009	bioRxiv	2020-01-30
2018	Christian D. Kelstrup, Konstantin Aizikov, Tanveer S. Batth, Arne Kreutzman, Dmitry Grinfeld, Oliver Lange, Daniel Mourad, Alexander A. Makarov, Jesper V. Olsen Limits for Resolving Isobaric Tandem Mass Tag Reporter Ions Using Phase-Constrained Spectrum Deconvolution published pages: 4008-4016, ISSN: 1535-3893, DOI: 10.1021/acs.jproteome.8b00381	Journal of Proteome Research 17/11	2020-01-30
2018	Clement M. Potel, Miao-Hsia Lin, Albert J. R. Heck, Simone Lemeer Defeating Major Contaminants in Fe 3+ - Immobilized Metal Ion Affinity Chromatography (IMAC) Phosphopeptide Enrichment published pages: 1028-1034, ISSN: 1535-9476, DOI: 10.1074/mcp.tir117.000518	Molecular & Cellular Proteomics 17/5	2020-01-29
2018	Yasset Perez-Riverol, Attila Csordas, Jingwen Bai, Manuel Bernal-Llinares, Suresh Hewapathirana, Deepti J Kundu, Avinash Inuganti, Johannes Griss, Gerhard Mayer, Martin Eisenacher, Enrique PÃ©rez, Julian Uszkoreit, Julianus Pfeuffer, Timo Sachsenberg, Åžule YÄ±lmaz, Shivani Tiwary, JÃ¼rgen Cox, Enrique Audain, Mathias Walzer, Andrew F Jarnuczak, Tobias Ternent, Alvis Brazma, Juan Antonio VizcaÃno The PRIDE database and related tools and resources in 2019: improving support for quantification data published pages: D442-D450, ISSN: 0305-1048, DOI: 10.1093/nar/gky1106	Nucleic Acids Research 47/D1	2019-11-25
2019	Jan Daniel Rudolph, JÃ¼rgen Cox A Network Module for the Perseus Software for Computational Proteomics Facilitates Proteome Interaction Graph Analysis published pages: 2052-2064, ISSN: 1535-3893, DOI: 10.1021/acs.jproteome.8b00927	Journal of Proteome Research 18/5	2019-11-22
2018	Nicolai Bache, Philipp E. Geyer, Dorte B. Bekker-Jensen, Ole Hoerning, Lasse Falkenby, Peter V. Treit, Sophia Doll, Igor Paron, Johannes B. MÃ¼ller, Florian Meier, Jesper V. Olsen, Ole Vorm, Matthias Mann A Novel LC System Embeds Analytes in Pre-formed Gradients for Rapid, Ultra-robust Proteomics published pages: 2284-2296, ISSN: 1535-9476, DOI: 10.1074/mcp.TIR118.000853	Molecular & Cellular Proteomics 17/11	2019-11-22
2018	Jennie R. Lill, Peter A. van Veelen, Stefan Tenzer, Arie Admon, Etienne Caron, Joshua E. Elias, Albert J.R. Heck, Miguel Marcilla, Fabio Marino, Markus MÃ¼ller, Bjoern Peters, Anthony Purcell, Alessandro Sette, Theo Sturm, Nicola Ternette, Juan Antonio VizcaÃno, Michal Bassani-Sternberg Minimal Information About an Immuno-Peptidomics Experiment (MIAIPE) published pages: 1800110, ISSN: 1615-9853, DOI: 10.1002/pmic.201800110	PROTEOMICS 18/12	2019-04-30
2018	Nicolai J. Wewer Albrechtsen, Philipp E. Geyer, Sophia Doll, Peter V. Treit, Kirstine N. Bojsen-MÃ¸ller, Christoffer Martinussen, Nils B. JÃ¸rgensen, Signe S. Torekov, Florian Meier, Lili Niu, Alberto Santos, Eva C. Keilhauer, Jens J. Holst, Sten Madsbad, Matthias Mann Plasma Proteome Profiling Reveals Dynamics of Inflammatory and Lipid Homeostasis Markers after Roux-En-Y Gastric Bypass Surgery published pages: 601-612.e3, ISSN: 2405-4712, DOI: 10.1016/j.cels.2018.10.012	Cell Systems 7/6	2019-04-30
2018	Magnus E. Jakobsson, JÄ™drzej M. MaÅ‚ecki, Levon Halabelian, Benedikt S. Nilges, Rita Pinto, Srikanth Kudithipudi, Stephanie Munk, Erna Davydova, Fawzi R. Zuhairi, Cheryl H. Arrowsmith, Albert Jeltsch, Sebastian A. Leidel, Jesper V. Olsen, PÃ¥l Ã˜. Falnes The dual methyltransferase METTL13 targets N terminus and Lys55 of eEF1A and modulates codon-specific translation rates published pages: 3411, ISSN: 2041-1723, DOI: 10.1038/s41467-018-05646-y	Nature Communications 9/1	2019-04-30
2018	Yu-Hsien Lin, Vojtech Franc, Albert J. R. Heck Similar Albeit Not the Same: In-Depth Analysis of Proteoforms of Human Serum, Bovine Serum, and Recombinant Human Fetuin published pages: 2861-2869, ISSN: 1535-3893, DOI: 10.1021/acs.jproteome.8b00318	Journal of Proteome Research 17/8	2019-04-30
2018	Ashley L. Comes, Sergi Papiol, Thorsten Mueller, Philipp E. Geyer, Matthias Mann, Thomas G. Schulze Proteomics for blood biomarker exploration of severe mental illness: pitfalls of the past and potential for the future published pages: 160, ISSN: 2158-3188, DOI: 10.1038/s41398-018-0219-2	Translational Psychiatry 8/1	2019-04-30
2016	Kyle L. Fort, Andrey Dyachenko, Clement M. Potel, Eleonora Corradini, Fabio Marino, Arjan Barendregt, Alexander A. Makarov, Richard A. Scheltema, Albert J. R. Heck Implementation of Ultraviolet Photodissociation on a Benchtop Q Exactive Mass Spectrometer and Its Application to Phosphoproteomics published pages: 2303-2310, ISSN: 0003-2700, DOI: 10.1021/acs.analchem.5b04162	Analytical Chemistry 88/4	2019-04-30
2016	Philip LÃ¶ssl, Andrea M. Brunner, Fan Liu, Aneika C. Leney, Masami Yamashita, Richard A. Scheltema, Albert J. R. Heck Deciphering the Interplay among Multisite Phosphorylation, Interaction Dynamics, and Conformational Transitions in a Tripartite Protein System published pages: 445-455, ISSN: 2374-7943, DOI: 10.1021/acscentsci.6b00053	ACS Central Science 2/7	2019-04-30
2016	Sem Tamara, Andrey Dyachenko, Kyle L. Fort, Alexander A. Makarov, Richard A. Scheltema, Albert J. R. Heck Symmetry of Charge Partitioning in Collisional and UV Photon-Induced Dissociation of Protein Assemblies published pages: 10860-10868, ISSN: 0002-7863, DOI: 10.1021/jacs.6b05147	Journal of the American Chemical Society 138/34	2019-04-30
2016	Philip LÃ¶ssl, Michiel van de Waterbeemd, Albert JR Heck The diverse and expanding role of mass spectrometry in structural and molecular biology published pages: 2634-2657, ISSN: 0261-4189, DOI: 10.15252/embj.201694818	The EMBO Journal 35/24	2019-04-30
2016	Dmitry Grinfeld, Konstantin Aizikov, Arne Kreutzmann, Eugen Damoc, Alexander Makarov Phase-Constrained Spectrum Deconvolution for Fourier Transform Mass Spectrometry published pages: , ISSN: 0003-2700, DOI: 10.1021/acs.analchem.6b03636	Analytical Chemistry	2019-04-30
2016	Chiara Francavilla, Moreno Papetti, Kristoffer T G Rigbolt, Anna-Kathrine Pedersen, Jon O Sigurdsson, Giuseppe Cazzamali, Gopal Karemore, Blagoy Blagoev, Jesper V Olsen Multilayered proteomics reveals molecular switches dictating ligand-dependent EGFR trafficking published pages: 608-618, ISSN: 1545-9993, DOI: 10.1038/nsmb.3218	Nature Structural & Molecular Biology 23/6	2019-04-30
2016	Anna Secher, Christian D. Kelstrup, Kilian W. Conde-Frieboes, Charles Pyke, Kirsten Raun, Birgitte S. Wulff, Jesper V. Olsen Analytic framework for peptidomics applied to large-scale neuropeptide identification published pages: 11436, ISSN: 2041-1723, DOI: 10.1038/ncomms11436	Nature Communications 7	2019-04-30
2016	Yang Yang, Fan Liu, Vojtech Franc, Liem Andhyk Halim, Huub Schellekens, Albert J. R. Heck Hybrid mass spectrometry approaches in glycoprotein analysis and their usage in scoring biosimilarity published pages: 13397, ISSN: 2041-1723, DOI: 10.1038/ncomms13397	Nature Communications 7	2019-04-30
2016	Stefka Tyanova, Tikira Temu, Pavel Sinitcyn, Arthur Carlson, Marco Y Hein, Tamar Geiger, Matthias Mann, JÃ¼rgen Cox The Perseus computational platform for comprehensive analysis of (prote)omics data published pages: 731-740, ISSN: 1548-7091, DOI: 10.1038/nmeth.3901	Nature Methods 13/9	2019-04-30

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