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MEDGENET
Medical Genomics and Epigenomics Network
Total Cost €
0EC-Contrib. €
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0MEDGENET project word cloud
Explore the words cloud of the MEDGENET project. It provides you a very rough idea of what is the project "MEDGENET" about.
ceitec
initiated
skills
innovative
genomics
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innovation
scientific
technologies
epigenomics
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synergies
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taskforce
transformational
translate
combination
leader
cutting
create
quality
university
expertise
practices
clinical
strengthen
stimulation
productivity
uppsala
tools
exchange
twinning
community
educated
direct
international
competitiveness
joint
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acute
strategy
modern
added
Project "MEDGENET" data sheet
The following table provides information about the project.
| Coordinator |
Masarykova univerzita
Organization address contact info |
| Coordinator Country | Czech Republic [CZ] |
| Project website | http://www.medgenet.eu |
| Total cost | 1˙016˙531 € |
| EC max contribution | 974˙529 € (96%) |
| Programme |
1. H2020-EU.4.b. (Twinning of research institutions) |
| Code Call | H2020-TWINN-2015 |
| Funding Scheme | CSA |
| Starting year | 2016 |
| Duration (year-month-day) | from 2016-01-01 to 2018-12-31 |
Partnership
Take a look of project's partnership.
| # | ||||
|---|---|---|---|---|
| 1 | Masarykova univerzita | CZ (BRNO STRED) | coordinator | 639˙243.00 |
| 2 | EUROPEAN MOLECULAR BIOLOGY LABORATORY | DE (HEIDELBERG) | participant | 118˙835.00 |
| 3 | ETHNIKO KENTRO EREVNAS KAI TECHNOLOGIKIS ANAPTYXIS | EL (THERMI THESSALONIKI) | participant | 109˙075.00 |
| 4 | UPPSALA UNIVERSITET | SE (UPPSALA) | participant | 107˙375.00 |
Map
Project objective
The main goal of MEDGENET consortium is to use synergies and existing expertise in EU leading institutions such as EMBL, Uppsala University and CERTH to reinforce the productivity and competitiveness of the CEITEC in the field of medical genomics and epigenomics. We propose clear strategy based on combination of unique complementary skills present in partner institutions that will transform CEITEC into a key leader in the field. ERA Chair who recently joint CEITEC already initiated the transformational change of the institute and TWINNING framework will further support sharing her international contacts with other CEITEC researchers. MEDGENET aims to create well-educated taskforce of biomedical researchers, who will notably contribute to the development of new genomics and bioinformatics tools and their application in clinical practice. Proposed project will enable to establish the best practices for performing innovative and high-quality biomedical research and to strengthen CEITEC´s competence to translate the research results into high value-added clinical applications. Stimulation of knowledge exchange, implementation of cutting edge technologies and mastery of modern genomics and bioinformatics methodologies will have a direct impact on the overall research and innovation potential of CEITEC and will increase its visibility in the international scientific community.
Deliverables
| Report on WP2 coordination, networking and educational events IV. | Documents, reports | 2020-01-15 12:38:18 |
| Report on outreach activities VI. | Documents, reports | 2020-01-15 12:38:18 |
| E-Newsletter IV. | Documents, reports | 2020-01-15 12:38:18 |
| E-Newsletter V. | Documents, reports | 2020-01-15 12:38:18 |
| Report on WP1 coordination, networking and educational events V. | Documents, reports | 2020-01-15 12:38:17 |
| Report on WP1 coordination, networking and educational events VI. | Documents, reports | 2020-01-15 12:38:18 |
| 2nd on-line book of abstracts WP2 | Documents, reports | 2020-01-15 12:38:18 |
| Report on WP2 coordination, networking and educational events III. | Documents, reports | 2020-01-15 12:38:17 |
| Report on CEITEC scientific excellence and MEDGENET impact assessment | Documents, reports | 2020-01-15 12:38:18 |
| Report on outreach activities IV. | Documents, reports | 2020-01-15 12:38:18 |
| Report on outreach activities V. | Documents, reports | 2020-01-15 12:38:18 |
| 1st on-line book of abstracts WP2 | Documents, reports | 2020-01-15 12:38:18 |
| 2nd on-line book of abstracts WP1 | Documents, reports | 2020-01-15 12:38:17 |
| Report on WP1 coordination, networking and educational events IV. | Documents, reports | 2020-01-15 12:38:17 |
| Report on WP2 coordination, networking and educational events II. | Documents, reports | 2020-01-15 12:38:18 |
| E-Newsletter VI. | Documents, reports | 2020-01-15 12:38:18 |
| 3rd on-line bok of abstracts WP1 | Documents, reports | 2020-01-15 12:38:17 |
| Report on WP1 coordination, networking and educational events II. | Documents, reports | 2020-01-15 12:38:16 |
| Report after introducing the a tool for monitoring evolution of publishing activity | Documents, reports | 2020-01-15 12:38:16 |
| MEDGENET web page | Websites, patent fillings, videos etc. | 2020-01-15 12:38:15 |
| Report on outreach activities I. | Documents, reports | 2020-01-15 12:38:15 |
| Report on WP1 coordination, networking and educational events III. | Documents, reports | 2020-01-15 12:38:16 |
| E-Newsletter III. | Documents, reports | 2020-01-15 12:38:16 |
| E-Newsletter II. | Documents, reports | 2020-01-15 12:38:16 |
| 1st on-line book of abstracts WP1 | Documents, reports | 2020-01-15 12:38:16 |
| Report on WP2 coordination, networking and educational events I. | Documents, reports | 2020-01-15 12:38:15 |
| Report on outreach activities III. | Documents, reports | 2020-01-15 12:38:16 |
| Report on outreach activities II. | Documents, reports | 2020-01-15 12:38:16 |
| Network’s public engagement and outreach plan | Documents, reports | 2020-01-15 12:38:15 |
| E-Newsletter I. | Documents, reports | 2020-01-15 12:38:16 |
| Report on WP1 coordination, networking and educational events I. | Documents, reports | 2020-01-15 12:38:15 |
| Database of funding opportunities | Documents, reports | 2020-01-15 12:38:15 |
Take a look to the deliverables list in detail: detailed list of MEDGENET deliverables.
Publications
| year | authors and title | journal | last update |
|---|---|---|---|
| 2018 |
Aliki Xochelli, Vasilis Bikos, Eleftheria Polychronidou, Chrysi Galigalidou, Andreas Agathangelidis, Frédéric Charlotte, Panagiotis Moschonas, Zadie Davis, Monica Colombo, Maria Roumelioti, Lesley-Ann Sutton, Patricia Groenen, Michiel van den Brand, Myriam Boudjoghra, Patricia Algara, Alexandra Traverse-Glehen, Ana Ferrer, Evangelia Stalika, Maria Karypidou, George Kanellis, Christina Kalpadakis, Manuella Mollejo, Gerasimos Pangalis, Panayiotis Vlamos, Rose-Marie Amini, Sarka Pospisilova, David Gonzalez, Maurilio Ponzoni, Achilles Anagnostopoulos, Véronique Giudicelli, Marie-Paule Lefranc, Blanca Espinet, Panagiotis Panagiotidis, Miguel Angel Piris, Ming-Qing Du, Richard Rosenquist, Theodora Papadaki, Chrysoula Belessi, Manlio Ferrarini, David Oscier, Dimitrios Tzovaras, Paolo Ghia, Frederic Davi, Anastasia Hadzidimitriou, Kostas Stamatopoulos Disease-biased and shared characteristics of the immunoglobulin gene repertoires in marginal zone B cell lymphoproliferations published pages: , ISSN: 0022-3417, DOI: 10.1002/path.5209 |
The Journal of Pathology | 2020-01-15 |
| 2017 |
Ivona NeÄasová, EliÅ¡ka JanouÅ¡ková, Tomáš Klumpler, Ctirad Hofr Basic domain of telomere guardian TRF2 reduces D-loop unwinding whereas Rap1 restores it published pages: 12170-12180, ISSN: 0305-1048, DOI: 10.1093/nar/gkx812 |
Nucleic Acids Research 45/21 | 2020-01-15 |
| 2018 |
Nikos Papakonstantinou, Stavroula Ntoufa, Maria Tsagiopoulou, Theodoros Moysiadis, Sujata Bhoi, Andigoni Malousi, Fotis Psomopoulos, Larry Mansouri, Stamatia Laidou, Despoina Papazoglou, Maria Gounari, Konstantinos Pasentsis, Karla Plevova, Venera Kuci-Emruli, Marti Duran-Ferrer, Zadie Davis, Sara Ek, Davide Rossi, Gianluca Gaidano, Matthias Ritgen, David Oscier, Niki Stavroyianni, Sarka Pospisilova, Frederic Davi, Paolo Ghia, Anastasia Hadzidimitriou, Chrysoula Belessi, Jose I Martin-Subero, Christiane Pott, Richard Rosenquist, Kostas Stamatopoulos Integrated epigenomic and transcriptomic analysis reveals TP63 as a novel player in clinically aggressive chronic lymphocytic leukemia published pages: , ISSN: 0020-7136, DOI: 10.1002/ijc.31999 |
International Journal of Cancer | 2020-01-15 |
| 2017 |
K Brazdilova, K Plevova, H Skuhrova Francova, H Kockova, M Borsky, V Bikos, J Malcikova, A Oltova, J Kotaskova, B Tichy, Y Brychtova, J Mayer, M Doubek, S Pospisilova Multiple productive IGH rearrangements denote oligoclonality even in immunophenotypically monoclonal CLL published pages: 234-236, ISSN: 0887-6924, DOI: 10.1038/leu.2017.274 |
Leukemia 32/1 | 2020-01-15 |
| 2017 |
R Rosenquist, P Ghia, A Hadzidimitriou, L-A Sutton, A Agathangelidis, P Baliakas, N Darzentas, V Giudicelli, M-P Lefranc, A W Langerak, C Belessi, F Davi, K Stamatopoulos Immunoglobulin gene sequence analysis in chronic lymphocytic leukemia: updated ERIC recommendations published pages: 1477-1481, ISSN: 0887-6924, DOI: 10.1038/leu.2017.125 |
Leukemia 31/7 | 2020-01-15 |
| 2016 |
A Vardi, E Vlachonikola, M Karypidou, E Stalika, V Bikos, K Gemenetzi, C Maramis, A Siorenta, A Anagnostopoulos, S Pospisilova, N Maglaveras, I Chouvarda, K Stamatopoulos, A Hadzidimitriou Restrictions in the T-cell repertoire of chronic lymphocytic leukemia: high-throughput immunoprofiling supports selection by shared antigenic elements published pages: 1555-1561, ISSN: 0887-6924, DOI: 10.1038/leu.2016.362 |
Leukemia 31/7 | 2020-01-15 |
| 2018 |
Nikola Tom, Ondrej Tom, Jitka Malcikova, Sarka Pavlova, Blanka Kubesova, Tobias Rausch, Miroslav Kolarik, Vladimir Benes, Vojtech Bystry, Sarka Pospisilova ToTem: a tool for variant calling pipeline optimization published pages: , ISSN: 1471-2105, DOI: 10.1186/s12859-018-2227-x |
BMC Bioinformatics 19/1 | 2020-01-15 |
| 2017 |
Aliki Xochelli, Panagiotis Baliakas, Ioannis Kavakiotis, Andreas Agathangelidis, Lesley-Ann Sutton, Eva Minga, Stavroula Ntoufa, Eugen Tausch, Xiao-Jie Yan, Tait Shanafelt, Karla Plevova, Myriam Boudjogra, Davide Rossi, Zadie Davis, Alba Navarro, Yorick Sandberg, Fie Juhl Vojdeman, Lydia Scarfo, Niki Stavroyianni, Andrey Sudarikov, Silvio Veronese, Tatiana Tzenou, Teodora Karan-Djurasevic, Mark Catherwood, Dirk Kienle, Maria Chatzouli, Monica Facco, Jasmin Bahlo, Christiane Pott, Lone Bredo Pedersen, Larry Mansouri, Karin E. Smedby, Charles C. Chu, Véronique Giudicelli, Marie-Paule Lefranc, Panagiotis Panagiotidis, Gunnar Juliusson, Achilles Anagnostopoulos, Ioannis Vlahavas, Darko Antic, Livio Trentin, Marco Montillo, Carsten Niemann, Hartmut Döhner, Anton W. Langerak, Sarka Pospisilova, Michael Hallek, Elias Campo, Nicholas Chiorazzi, Nikos Maglaveras, David Oscier, Gianluca Gaidano, Diane F. Jelinek, Stephan Stilgenbauer, Ioanna Chouvarda, Nikos Darzentas, Chrysoula Belessi, Frederic Davi, Anastasia Hadzidimitriou, Richard Rosenquist, Paolo Ghia, Kostas Stamatopoulos Chronic Lymphocytic Leukemia with Mutated IGHV4-34 Receptors: Shared and Distinct Immunogenetic Features and Clinical Outcomes published pages: 5292-5301, ISSN: 1078-0432, DOI: 10.1158/1078-0432.ccr-16-3100 |
Clinical Cancer Research 23/17 | 2020-01-15 |
| 2019 |
Panagiotis Baliakas, Theodoros Moysiadis, Anastasia Hadzidimitriou, Aliki Xochelli, Sabine Jeromin, Andreas Agathangelidis, Mattias Mattsson, Lesley-Ann Sutton, Eva Minga, Lydia Scarfò, Davide Rossi, Zadie Davis, Neus Villamor, Helen Parker, Jana Kotaskova, Evangelia Stalika, Karla Plevova, Larry Mansouri, Diego Cortese, Alba Navarro, Julio Delgado, Marta Larrayoz, Emma Young, Achilles Anagnostopoulos, Karin E. Smedby, Gunnar Juliusson, Oonagh Sheehy, Mark Catherwood, Jonathan C. Strefford, Niki Stavroyianni, Chrysoula Belessi, Sarka Pospisilova, David Oscier, Gianluca Gaidano, Elias Campo, Claudia Haferlach, Paolo Ghia, Richard Rosenquist, Kostas Stamatopoulos Tailored approaches grounded on immunogenetic features for refined prognostication in chronic lymphocytic leukemia published pages: 360-369, ISSN: 0390-6078, DOI: 10.3324/haematol.2018.195032 |
Haematologica 104/2 | 2020-01-15 |
| 2018 |
Daniel Primo, Lydia Scarfò, Aliki Xochelli, Mattias Mattsson, Pamela Ranghetti, Ana Belén Espinosa, Alicia Robles, Julian Gorrochategui, JoaquÃn MartÃnez-López, Javier de la Serna, Marcos González, Alberto Chaparro Gil, Eduardo Anguita, Sandra Iraheta, Veerendra Munugalavadla, Christophe Quéva, Stacey Tannheimer, Richard Rosenquist, Kostas Stamatopoulos, Joan Ballesteros, Paolo Ghia A novel ex vivo high-throughput assay reveals antiproliferative effects of idelalisib and ibrutinib in chronic lymphocytic leukemia published pages: , ISSN: 1949-2553, DOI: 10.18632/oncotarget.25419 |
Oncotarget 9/40 | 2020-01-15 |
| 2017 |
Karol Pal, Vojtech Bystry, Tomas Reigl, Martin Demko, Adam Krejci, Tasoula Touloumenidou, Evangelia Stalika, Boris Tichy, Paolo Ghia, Kostas Stamatopoulos, Sarka Pospisilova, Jitka Malcikova, Nikos Darzentas GLASS: assisted and standardized assessment of gene variations from Sanger sequence trace data published pages: 3802-3804, ISSN: 1367-4803, DOI: 10.1093/bioinformatics/btx423 |
Bioinformatics 33/23 | 2020-01-15 |
| 2018 |
J. Malcikova, E. Tausch, D. Rossi, L. A. Sutton, T. Soussi, T. Zenz, A. P. Kater, C. U. Niemann, D. Gonzalez, F. Davi, M. Gonzalez Diaz, C. Moreno, G. Gaidano, K. Stamatopoulos, R. Rosenquist, S. Stilgenbauer, P. Ghia, S. Pospisilova ERIC recommendations for TP53 mutation analysis in chronic lymphocytic leukemia—update on methodological approaches and results interpretation published pages: 1070-1080, ISSN: 0887-6924, DOI: 10.1038/s41375-017-0007-7 |
Leukemia 32/5 | 2020-01-15 |
| 2016 |
Nikos Papakonstantinou, Stavroula Ntoufa, Elisavet Chartomatsidou, Konstantia Kotta, Andreas Agathangelidis, Lefki Giassafaki, Tzeni Karamanli, Panagiota Bele, Theodoros Moysiadis, Panagiotis Baliakas, Lesley Ann Sutton, Niki Stavroyianni, Achilles Anagnostopoulos, Antonios M. Makris, Paolo Ghia, Richard Rosenquist, Kostas Stamatopoulos The histone methyltransferase EZH2 as a novel prosurvival factor in clinically aggressive chronic lymphocytic leukemia published pages: , ISSN: 1949-2553, DOI: 10.18632/oncotarget.9371 |
Oncotarget | 2020-01-15 |
| 2016 |
P. Baliakas, A. Puiggros, A. Xochelli, L.-A. Sutton, F. Nguyen-Khac, A. Gardiner, K. Plevova, E. Minga, A. Hadzidimitriou, R. Walewska, H. McCarthy, M. Ortega, R. Collado, T. Gonzalez, I. Granada, E. Luno, J. Kota kova, T. Moysiadis, Z. Davis, N. Stavroyianni, A. Anagnostopoulos, J. C. Strefford, S. Pospisilova, F. Davi, A. Athanasiadou, R. Rosenquist, D. Oscier, B. Espinet, K. Stamatopoulos Additional trisomies amongst patients with chronic lymphocytic leukemia carrying trisomy 12: the accompanying chromosome makes a difference published pages: e299-e302, ISSN: 0390-6078, DOI: 10.3324/haematol.2015.140202 |
Haematologica 101/7 | 2020-01-15 |
| 2016 |
V. Navrkalova, E. Young, P. Baliakas, L. Radova, L.-A. Sutton, K. Plevova, L. Mansouri, V. Ljungstrom, S. Ntoufa, Z. Davis, G. Juliusson, K. E. Smedby, C. Belessi, P. Panagiotidis, T. Touloumenidou, F. Davi, A. W. Langerak, P. Ghia, J. C. Strefford, D. Oscier, J. Mayer, K. Stamatopoulos, S. Pospisilova, R. Rosenquist, M. Trbusek \"ATM mutations in major stereotyped subsets of chronic lymphocytic leukemia: enrichment in subset #2 is associated with markedly short telomeres\" published pages: e369-e373, ISSN: 0390-6078, DOI: 10.3324/haematol.2016.142968 |
Haematologica 101/9 | 2020-01-15 |
| 2016 |
R. Rosenquist, A. Rosenwald, M.-Q. Du, G. Gaidano, P. Groenen, A. Wotherspoon, P. Ghia, P. Gaulard, E. Campo, K. Stamatopoulos Clinical impact of recurrently mutated genes on lymphoma diagnostics: state-of-the-art and beyond published pages: 1002-1009, ISSN: 0390-6078, DOI: 10.3324/haematol.2015.134510 |
Haematologica 101/9 | 2020-01-15 |
| 2016 |
L.-A. Sutton, E. Young, P. Baliakas, A. Hadzidimitriou, T. Moysiadis, K. Plevova, D. Rossi, J. Kminkova, E. Stalika, L. B. Pedersen, J. Malcikova, A. Agathangelidis, Z. Davis, L. Mansouri, L. Scarfo, M. Boudjoghra, A. Navarro, A. F. Muggen, X.-J. Yan, F. Nguyen-Khac, M. Larrayoz, P. Panagiotidis, N. Chiorazzi, C. U. Niemann, C. Belessi, E. Campo, J. C. Strefford, A. W. Langerak, D. Oscier, G. Gaidano, S. Pospisilova, F. Davi, P. Ghia, K. Stamatopoulos, R. Rosenquist Different spectra of recurrent gene mutations in subsets of chronic lymphocytic leukemia harboring stereotyped B-cell receptors published pages: 959-967, ISSN: 0390-6078, DOI: 10.3324/haematol.2016.141812 |
Haematologica 101/8 | 2020-01-15 |
Are you the coordinator (or a participant) of this project? Plaese send me more information about the "MEDGENET" project.
For instance: the website url (it has not provided by EU-opendata yet), the logo, a more detailed description of the project (in plain text as a rtf file or a word file), some pictures (as picture files, not embedded into any word file), twitter account, linkedin page, etc.
Send me an email (fabio@fabiodisconzi.com) and I put them in your project's page as son as possible.
Thanks. And then put a link of this page into your project's website.
The information about "MEDGENET" are provided by the European Opendata Portal: CORDIS opendata.