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MEDGENET

Medical Genomics and Epigenomics Network

Total Cost €

EC-Contrib. €

Partnership

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Outcomes and
results

MEDGENET project word cloud

Explore the words cloud of the MEDGENET project. It provides you a very rough idea of what is the project "MEDGENET" about.

exchange international create technologies competitiveness ceitec joint medical certh transform leader bioinformatics educated clinical expertise notably tools biomedical mastery genomics transformational chair direct translate skills synergies acute modern epigenomics framework clear university scientific strengthen era competence added embl performing community combination innovation initiated taskforce practices stimulation visibility strategy complementary innovative medgenet quality edge cutting productivity reinforce twinning contacts uppsala sharing

Project "MEDGENET" data sheet

The following table provides information about the project.

Coordinator	Masarykova univerzita Organization address address: Zerotinovo namesti 9 city: BRNO STRED postcode: 60177 website: http://www.muni.cz contact info title: n.a. name: n.a. surname: n.a. function: n.a. email: n.a. telephone: n.a. fax: n.a.
Coordinator Country	Czech Republic [CZ]
Project website	http://www.medgenet.eu
Total cost	1˙016˙531 €
EC max contribution	974˙529 € (96%)
Programme	1. H2020-EU.4.b. (Twinning of research institutions)
Code Call	H2020-TWINN-2015
Funding Scheme	CSA
Starting year	2016
Duration (year-month-day)	from 2016-01-01 to 2018-12-31

Partnership

Take a look of project's partnership.

#	participants	country	role	EC contrib. [€]
1	Masarykova univerzita Masarykova univerzita Organization address address: Zerotinovo namesti 9 city: BRNO STRED postcode: 60177 website: http://www.muni.cz contact info title: n.a. name: n.a. surname: n.a. function: n.a. email: n.a. telephone: n.a. fax: n.a.	CZ (BRNO STRED)	coordinator	639˙243.00
2	EUROPEAN MOLECULAR BIOLOGY LABORATORY EUROPEAN MOLECULAR BIOLOGY LABORATORY Organization address address: Meyerhofstrasse 1 city: HEIDELBERG postcode: 69117 website: http://www.embl.de contact info title: n.a. name: n.a. surname: n.a. function: n.a. email: n.a. telephone: n.a. fax: n.a.	DE (HEIDELBERG)	participant	118˙835.00
3	ETHNIKO KENTRO EREVNAS KAI TECHNOLOGIKIS ANAPTYXIS ETHNIKO KENTRO EREVNAS KAI TECHNOLOGIKIS ANAPTYXIS Organization address address: CHARILAOU THERMI ROAD 6 KM city: THERMI THESSALONIKI postcode: 57001 website: www.certh.gr contact info title: n.a. name: n.a. surname: n.a. function: n.a. email: n.a. telephone: n.a. fax: n.a.	EL (THERMI THESSALONIKI)	participant	109˙075.00
4	UPPSALA UNIVERSITET UPPSALA UNIVERSITET Organization address address: VON KRAEMERS ALLE 4 city: UPPSALA postcode: 751 05 website: www.uu.se contact info title: n.a. name: n.a. surname: n.a. function: n.a. email: n.a. telephone: n.a. fax: n.a.	SE (UPPSALA)	participant	107˙375.00

Map

Project objective

The main goal of MEDGENET consortium is to use synergies and existing expertise in EU leading institutions such as EMBL, Uppsala University and CERTH to reinforce the productivity and competitiveness of the CEITEC in the field of medical genomics and epigenomics. We propose clear strategy based on combination of unique complementary skills present in partner institutions that will transform CEITEC into a key leader in the field. ERA Chair who recently joint CEITEC already initiated the transformational change of the institute and TWINNING framework will further support sharing her international contacts with other CEITEC researchers. MEDGENET aims to create well-educated taskforce of biomedical researchers, who will notably contribute to the development of new genomics and bioinformatics tools and their application in clinical practice. Proposed project will enable to establish the best practices for performing innovative and high-quality biomedical research and to strengthen CEITEC´s competence to translate the research results into high value-added clinical applications. Stimulation of knowledge exchange, implementation of cutting edge technologies and mastery of modern genomics and bioinformatics methodologies will have a direct impact on the overall research and innovation potential of CEITEC and will increase its visibility in the international scientific community.

Deliverables

List of deliverables.
Report on WP2 coordination, networking and educational events IV.	Documents, reports	2020-01-15 12:38:18
Report on outreach activities VI.	Documents, reports	2020-01-15 12:38:18
E-Newsletter IV.	Documents, reports	2020-01-15 12:38:18
E-Newsletter V.	Documents, reports	2020-01-15 12:38:18
Report on WP1 coordination, networking and educational events V.	Documents, reports	2020-01-15 12:38:17
Report on WP1 coordination, networking and educational events VI.	Documents, reports	2020-01-15 12:38:18
2nd on-line book of abstracts WP2	Documents, reports	2020-01-15 12:38:18
Report on WP2 coordination, networking and educational events III.	Documents, reports	2020-01-15 12:38:17
Report on CEITEC scientific excellence and MEDGENET impact assessment	Documents, reports	2020-01-15 12:38:18
Report on outreach activities IV.	Documents, reports	2020-01-15 12:38:18
Report on outreach activities V.	Documents, reports	2020-01-15 12:38:18
1st on-line book of abstracts WP2	Documents, reports	2020-01-15 12:38:18
2nd on-line book of abstracts WP1	Documents, reports	2020-01-15 12:38:17
Report on WP1 coordination, networking and educational events IV.	Documents, reports	2020-01-15 12:38:17
Report on WP2 coordination, networking and educational events II.	Documents, reports	2020-01-15 12:38:18
E-Newsletter VI.	Documents, reports	2020-01-15 12:38:18
3rd on-line bok of abstracts WP1	Documents, reports	2020-01-15 12:38:17
Report on WP1 coordination, networking and educational events II.	Documents, reports	2020-01-15 12:38:16
Report after introducing the a tool for monitoring evolution of publishing activity	Documents, reports	2020-01-15 12:38:16
MEDGENET web page	Websites, patent fillings, videos etc.	2020-01-15 12:38:15
Report on outreach activities I.	Documents, reports	2020-01-15 12:38:15
Report on WP1 coordination, networking and educational events III.	Documents, reports	2020-01-15 12:38:16
E-Newsletter III.	Documents, reports	2020-01-15 12:38:16
E-Newsletter II.	Documents, reports	2020-01-15 12:38:16
1st on-line book of abstracts WP1	Documents, reports	2020-01-15 12:38:16
Report on WP2 coordination, networking and educational events I.	Documents, reports	2020-01-15 12:38:15
Report on outreach activities III.	Documents, reports	2020-01-15 12:38:16
Report on outreach activities II.	Documents, reports	2020-01-15 12:38:16
Networkâ€™s public engagement and outreach plan	Documents, reports	2020-01-15 12:38:15
E-Newsletter I.	Documents, reports	2020-01-15 12:38:16
Report on WP1 coordination, networking and educational events I.	Documents, reports	2020-01-15 12:38:15
Database of funding opportunities	Documents, reports	2020-01-15 12:38:15

Take a look to the deliverables list in detail: detailed list of MEDGENET deliverables.

Publications

List of publications.
year	authors and title	journal	last update
2018	Aliki Xochelli, Vasilis Bikos, Eleftheria Polychronidou, Chrysi Galigalidou, Andreas Agathangelidis, FrÃ©dÃ©ric Charlotte, Panagiotis Moschonas, Zadie Davis, Monica Colombo, Maria Roumelioti, Lesley-Ann Sutton, Patricia Groenen, Michiel van den Brand, Myriam Boudjoghra, Patricia Algara, Alexandra Traverse-Glehen, Ana Ferrer, Evangelia Stalika, Maria Karypidou, George Kanellis, Christina Kalpadakis, Manuella Mollejo, Gerasimos Pangalis, Panayiotis Vlamos, Rose-Marie Amini, Sarka Pospisilova, David Gonzalez, Maurilio Ponzoni, Achilles Anagnostopoulos, VÃ©ronique Giudicelli, Marie-Paule Lefranc, Blanca Espinet, Panagiotis Panagiotidis, Miguel Angel Piris, Ming-Qing Du, Richard Rosenquist, Theodora Papadaki, Chrysoula Belessi, Manlio Ferrarini, David Oscier, Dimitrios Tzovaras, Paolo Ghia, Frederic Davi, Anastasia Hadzidimitriou, Kostas Stamatopoulos Disease-biased and shared characteristics of the immunoglobulin gene repertoires in marginal zone B cell lymphoproliferations published pages: , ISSN: 0022-3417, DOI: 10.1002/path.5209	The Journal of Pathology	2020-01-15
2017	Ivona NeÄasovÃ¡, EliÅ¡ka JanouÅ¡kovÃ¡, TomÃ¡Å¡ Klumpler, Ctirad Hofr Basic domain of telomere guardian TRF2 reduces D-loop unwinding whereas Rap1 restores it published pages: 12170-12180, ISSN: 0305-1048, DOI: 10.1093/nar/gkx812	Nucleic Acids Research 45/21	2020-01-15
2018	Nikos Papakonstantinou, Stavroula Ntoufa, Maria Tsagiopoulou, Theodoros Moysiadis, Sujata Bhoi, Andigoni Malousi, Fotis Psomopoulos, Larry Mansouri, Stamatia Laidou, Despoina Papazoglou, Maria Gounari, Konstantinos Pasentsis, Karla Plevova, Venera Kuci-Emruli, Marti Duran-Ferrer, Zadie Davis, Sara Ek, Davide Rossi, Gianluca Gaidano, Matthias Ritgen, David Oscier, Niki Stavroyianni, Sarka Pospisilova, Frederic Davi, Paolo Ghia, Anastasia Hadzidimitriou, Chrysoula Belessi, Jose I Martin-Subero, Christiane Pott, Richard Rosenquist, Kostas Stamatopoulos Integrated epigenomic and transcriptomic analysis reveals TP63 as a novel player in clinically aggressive chronic lymphocytic leukemia published pages: , ISSN: 0020-7136, DOI: 10.1002/ijc.31999	International Journal of Cancer	2020-01-15
2017	K Brazdilova, K Plevova, H Skuhrova Francova, H Kockova, M Borsky, V Bikos, J Malcikova, A Oltova, J Kotaskova, B Tichy, Y Brychtova, J Mayer, M Doubek, S Pospisilova Multiple productive IGH rearrangements denote oligoclonality even in immunophenotypically monoclonal CLL published pages: 234-236, ISSN: 0887-6924, DOI: 10.1038/leu.2017.274	Leukemia 32/1	2020-01-15
2017	R Rosenquist, P Ghia, A Hadzidimitriou, L-A Sutton, A Agathangelidis, P Baliakas, N Darzentas, V Giudicelli, M-P Lefranc, A W Langerak, C Belessi, F Davi, K Stamatopoulos Immunoglobulin gene sequence analysis in chronic lymphocytic leukemia: updated ERIC recommendations published pages: 1477-1481, ISSN: 0887-6924, DOI: 10.1038/leu.2017.125	Leukemia 31/7	2020-01-15
2016	A Vardi, E Vlachonikola, M Karypidou, E Stalika, V Bikos, K Gemenetzi, C Maramis, A Siorenta, A Anagnostopoulos, S Pospisilova, N Maglaveras, I Chouvarda, K Stamatopoulos, A Hadzidimitriou Restrictions in the T-cell repertoire of chronic lymphocytic leukemia: high-throughput immunoprofiling supports selection by shared antigenic elements published pages: 1555-1561, ISSN: 0887-6924, DOI: 10.1038/leu.2016.362	Leukemia 31/7	2020-01-15
2018	Nikola Tom, Ondrej Tom, Jitka Malcikova, Sarka Pavlova, Blanka Kubesova, Tobias Rausch, Miroslav Kolarik, Vladimir Benes, Vojtech Bystry, Sarka Pospisilova ToTem: a tool for variant calling pipeline optimization published pages: , ISSN: 1471-2105, DOI: 10.1186/s12859-018-2227-x	BMC Bioinformatics 19/1	2020-01-15
2017	Aliki Xochelli, Panagiotis Baliakas, Ioannis Kavakiotis, Andreas Agathangelidis, Lesley-Ann Sutton, Eva Minga, Stavroula Ntoufa, Eugen Tausch, Xiao-Jie Yan, Tait Shanafelt, Karla Plevova, Myriam Boudjogra, Davide Rossi, Zadie Davis, Alba Navarro, Yorick Sandberg, Fie Juhl Vojdeman, Lydia Scarfo, Niki Stavroyianni, Andrey Sudarikov, Silvio Veronese, Tatiana Tzenou, Teodora Karan-Djurasevic, Mark Catherwood, Dirk Kienle, Maria Chatzouli, Monica Facco, Jasmin Bahlo, Christiane Pott, Lone Bredo Pedersen, Larry Mansouri, Karin E. Smedby, Charles C. Chu, VÃ©ronique Giudicelli, Marie-Paule Lefranc, Panagiotis Panagiotidis, Gunnar Juliusson, Achilles Anagnostopoulos, Ioannis Vlahavas, Darko Antic, Livio Trentin, Marco Montillo, Carsten Niemann, Hartmut DÃ¶hner, Anton W. Langerak, Sarka Pospisilova, Michael Hallek, Elias Campo, Nicholas Chiorazzi, Nikos Maglaveras, David Oscier, Gianluca Gaidano, Diane F. Jelinek, Stephan Stilgenbauer, Ioanna Chouvarda, Nikos Darzentas, Chrysoula Belessi, Frederic Davi, Anastasia Hadzidimitriou, Richard Rosenquist, Paolo Ghia, Kostas Stamatopoulos Chronic Lymphocytic Leukemia with Mutated IGHV4-34 Receptors: Shared and Distinct Immunogenetic Features and Clinical Outcomes published pages: 5292-5301, ISSN: 1078-0432, DOI: 10.1158/1078-0432.ccr-16-3100	Clinical Cancer Research 23/17	2020-01-15
2019	Panagiotis Baliakas, Theodoros Moysiadis, Anastasia Hadzidimitriou, Aliki Xochelli, Sabine Jeromin, Andreas Agathangelidis, Mattias Mattsson, Lesley-Ann Sutton, Eva Minga, Lydia ScarfÃ², Davide Rossi, Zadie Davis, Neus Villamor, Helen Parker, Jana Kotaskova, Evangelia Stalika, Karla Plevova, Larry Mansouri, Diego Cortese, Alba Navarro, Julio Delgado, Marta Larrayoz, Emma Young, Achilles Anagnostopoulos, Karin E. Smedby, Gunnar Juliusson, Oonagh Sheehy, Mark Catherwood, Jonathan C. Strefford, Niki Stavroyianni, Chrysoula Belessi, Sarka Pospisilova, David Oscier, Gianluca Gaidano, Elias Campo, Claudia Haferlach, Paolo Ghia, Richard Rosenquist, Kostas Stamatopoulos Tailored approaches grounded on immunogenetic features for refined prognostication in chronic lymphocytic leukemia published pages: 360-369, ISSN: 0390-6078, DOI: 10.3324/haematol.2018.195032	Haematologica 104/2	2020-01-15
2018	Daniel Primo, Lydia ScarfÃ², Aliki Xochelli, Mattias Mattsson, Pamela Ranghetti, Ana BelÃ©n Espinosa, Alicia Robles, Julian Gorrochategui, JoaquÃn MartÃnez-LÃ³pez, Javier de la Serna, Marcos GonzÃ¡lez, Alberto Chaparro Gil, Eduardo Anguita, Sandra Iraheta, Veerendra Munugalavadla, Christophe QuÃ©va, Stacey Tannheimer, Richard Rosenquist, Kostas Stamatopoulos, Joan Ballesteros, Paolo Ghia *A novel ex vivo* high-throughput assay reveals antiproliferative effects of idelalisib and ibrutinib in chronic lymphocytic leukemia** published pages: , ISSN: 1949-2553, DOI: 10.18632/oncotarget.25419	Oncotarget 9/40	2020-01-15
2017	Karol Pal, Vojtech Bystry, Tomas Reigl, Martin Demko, Adam Krejci, Tasoula Touloumenidou, Evangelia Stalika, Boris Tichy, Paolo Ghia, Kostas Stamatopoulos, Sarka Pospisilova, Jitka Malcikova, Nikos Darzentas GLASS: assisted and standardized assessment of gene variations from Sanger sequence trace data published pages: 3802-3804, ISSN: 1367-4803, DOI: 10.1093/bioinformatics/btx423	Bioinformatics 33/23	2020-01-15
2018	J. Malcikova, E. Tausch, D. Rossi, L. A. Sutton, T. Soussi, T. Zenz, A. P. Kater, C. U. Niemann, D. Gonzalez, F. Davi, M. Gonzalez Diaz, C. Moreno, G. Gaidano, K. Stamatopoulos, R. Rosenquist, S. Stilgenbauer, P. Ghia, S. Pospisilova ERIC recommendations for TP53 mutation analysis in chronic lymphocytic leukemiaâ€”update on methodological approaches and results interpretation published pages: 1070-1080, ISSN: 0887-6924, DOI: 10.1038/s41375-017-0007-7	Leukemia 32/5	2020-01-15
2016	Nikos Papakonstantinou, Stavroula Ntoufa, Elisavet Chartomatsidou, Konstantia Kotta, Andreas Agathangelidis, Lefki Giassafaki, Tzeni Karamanli, Panagiota Bele, Theodoros Moysiadis, Panagiotis Baliakas, Lesley Ann Sutton, Niki Stavroyianni, Achilles Anagnostopoulos, Antonios M. Makris, Paolo Ghia, Richard Rosenquist, Kostas Stamatopoulos The histone methyltransferase EZH2 as a novel prosurvival factor in clinically aggressive chronic lymphocytic leukemia published pages: , ISSN: 1949-2553, DOI: 10.18632/oncotarget.9371	Oncotarget	2020-01-15
2016	P. Baliakas, A. Puiggros, A. Xochelli, L.-A. Sutton, F. Nguyen-Khac, A. Gardiner, K. Plevova, E. Minga, A. Hadzidimitriou, R. Walewska, H. McCarthy, M. Ortega, R. Collado, T. Gonzalez, I. Granada, E. Luno, J. KotaÂ kova, T. Moysiadis, Z. Davis, N. Stavroyianni, A. Anagnostopoulos, J. C. Strefford, S. Pospisilova, F. Davi, A. Athanasiadou, R. Rosenquist, D. Oscier, B. Espinet, K. Stamatopoulos Additional trisomies amongst patients with chronic lymphocytic leukemia carrying trisomy 12: the accompanying chromosome makes a difference published pages: e299-e302, ISSN: 0390-6078, DOI: 10.3324/haematol.2015.140202	Haematologica 101/7	2020-01-15
2016	V. Navrkalova, E. Young, P. Baliakas, L. Radova, L.-A. Sutton, K. Plevova, L. Mansouri, V. Ljungstrom, S. Ntoufa, Z. Davis, G. Juliusson, K. E. Smedby, C. Belessi, P. Panagiotidis, T. Touloumenidou, F. Davi, A. W. Langerak, P. Ghia, J. C. Strefford, D. Oscier, J. Mayer, K. Stamatopoulos, S. Pospisilova, R. Rosenquist, M. Trbusek \"ATM mutations in major stereotyped subsets of chronic lymphocytic leukemia: enrichment in subset #2 is associated with markedly short telomeres\" published pages: e369-e373, ISSN: 0390-6078, DOI: 10.3324/haematol.2016.142968	Haematologica 101/9	2020-01-15
2016	R. Rosenquist, A. Rosenwald, M.-Q. Du, G. Gaidano, P. Groenen, A. Wotherspoon, P. Ghia, P. Gaulard, E. Campo, K. Stamatopoulos Clinical impact of recurrently mutated genes on lymphoma diagnostics: state-of-the-art and beyond published pages: 1002-1009, ISSN: 0390-6078, DOI: 10.3324/haematol.2015.134510	Haematologica 101/9	2020-01-15
2016	L.-A. Sutton, E. Young, P. Baliakas, A. Hadzidimitriou, T. Moysiadis, K. Plevova, D. Rossi, J. Kminkova, E. Stalika, L. B. Pedersen, J. Malcikova, A. Agathangelidis, Z. Davis, L. Mansouri, L. Scarfo, M. Boudjoghra, A. Navarro, A. F. Muggen, X.-J. Yan, F. Nguyen-Khac, M. Larrayoz, P. Panagiotidis, N. Chiorazzi, C. U. Niemann, C. Belessi, E. Campo, J. C. Strefford, A. W. Langerak, D. Oscier, G. Gaidano, S. Pospisilova, F. Davi, P. Ghia, K. Stamatopoulos, R. Rosenquist Different spectra of recurrent gene mutations in subsets of chronic lymphocytic leukemia harboring stereotyped B-cell receptors published pages: 959-967, ISSN: 0390-6078, DOI: 10.3324/haematol.2016.141812	Haematologica 101/8	2020-01-15

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