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SLAM-Dx SIGNED

Diagnostic drug response-profiling using SLAMseq

Total Cost €

0

EC-Contrib. €

0

Partnership

0

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 SLAM-Dx project word cloud

Explore the words cloud of the SLAM-Dx project. It provides you a very rough idea of what is the project "SLAM-Dx" about.

stg    deciphering    linked    expression    implications    variety    distinction    patient    treatment    medicine    scalable    selectivity    protocol    tool    economy    poc    techniques    function    greatest    utility    cells    survival    primary    sequencing    microarrays    unbiased    predicting    clinical    personalised    guiding    precluding    secondary    therapeutics    disease    successful    profiling    format    preclinical    one    clinic    alkylation    chromatin    co    transcriptional    qualify    cell    unprecedented    diagnostic    direct    right    resolution    optimization    slam    precision    probing    efficacy    lack    action    time    hampers    rapid    sh    therapy    candidate    vivo    metabolic    96    erc    first    translational    mrna    slamseq    probe    drug    quantification    thiol    seq    rna    overcome    gene    systematic    library    limited    preparation    commercial    336860    day    perturbations    input    tools    proof    decisions    severe    limitation    leukemia    revolutionize    dx    tumor    select   

Project "SLAM-Dx" data sheet

The following table provides information about the project.

Coordinator
FORSCHUNGSINSTITUT FUR MOLEKULARE PATHOLOGIE GESELLSCHAFT MBH 

Organization address
address: CAMPUS-VIENNA-BIOCENTER 1
city: WIEN
postcode: 1030
website: www.imp.ac.at

contact info
title: n.a.
name: n.a.
surname: n.a.
function: n.a.
email: n.a.
telephone: n.a.
fax: n.a.

 Coordinator Country Austria [AT]
 Total cost 150˙000 €
 EC max contribution 150˙000 € (100%)
 Programme 1. H2020-EU.1.1. (EXCELLENT SCIENCE - European Research Council (ERC))
 Code Call ERC-2019-PoC
 Funding Scheme ERC-POC-LS
 Starting year 2019
 Duration (year-month-day) from 2019-10-01   to  2021-03-31

 Partnership

Take a look of project's partnership.

# participants  country  role  EC contrib. [€] 
1    FORSCHUNGSINSTITUT FUR MOLEKULARE PATHOLOGIE GESELLSCHAFT MBH AT (WIEN) coordinator 150˙000.00

Map

 Project objective

One of the greatest challenges today is to select the right drug for the right patient at the right time. A lack of diagnostic tools for predicting therapy response currently hampers patient-tailored treatment decisions in the clinic with severe implications for economy and – most importantly – patient survival.

Profiling transcriptional responses to drug treatment is a key method for probing the activity of targeted therapeutics and guiding their use in the clinic. A major limitation of established gene expression profiling techniques (such as microarrays and RNA-seq) is their limited time resolution precluding the distinction of direct from secondary transcriptional responses to drug therapy. This hampers their utility for deciphering drug action and guiding patient-tailored treatment decisions.

To overcome this problem, as part of an ERC-StG project (Systematic in-vivo analysis of chromatin-associated targets in leukemia, 336860) I have co-developed thiol(SH)-linked alkylation for the metabolic sequencing of RNA (SLAMseq) as a rapid, robust and highly scalable method for the unbiased quantification of changes in mRNA production upon cell perturbations. Its unique features (low input cell numbers, short treatment-to-sample time, 1-day protocol library preparation in 96-well format) may qualify SLAMseq as the first method to probe the function, efficacy and selectivity of candidate therapeutics in primary (tumor) cells with unprecedented precision and on a large scale.

In this ERC-PoC project, I propose to establish technical and commercial proof-of-concept for SLAMseq’s application in preclinical and clinical drug development and optimization, and for patient-tailored treatment selection. Upon the successful proof-of-concept for SLAMseq’s application as diagnostic tool, SLAM-Dx has the potential to revolutionize translational research and personalised medicine in a variety of disease areas.

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The information about "SLAM-DX" are provided by the European Opendata Portal: CORDIS opendata.

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