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SLAM-Dx SIGNED

Diagnostic drug response-profiling using SLAMseq

Total Cost €

0

EC-Contrib. €

0

Partnership

0

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 SLAM-Dx project word cloud

Explore the words cloud of the SLAM-Dx project. It provides you a very rough idea of what is the project "SLAM-Dx" about.

first    preparation    primary    probe    unbiased    96    techniques    seq    drug    lack    sequencing    precluding    preclinical    quantification    tools    day    cells    treatment    limitation    protocol    gene    tumor    distinction    personalised    candidate    leukemia    utility    slam    function    poc    secondary    overcome    systematic    erc    library    economy    rapid    predicting    revolutionize    medicine    commercial    optimization    greatest    qualify    disease    metabolic    resolution    336860    therapy    therapeutics    time    expression    right    hampers    patient    linked    decisions    stg    alkylation    chromatin    clinical    implications    selectivity    sh    mrna    deciphering    successful    vivo    cell    probing    scalable    transcriptional    proof    variety    precision    input    slamseq    dx    survival    one    profiling    clinic    microarrays    direct    select    format    thiol    severe    limited    co    rna    efficacy    action    guiding    perturbations    diagnostic    unprecedented    translational    tool   

Project "SLAM-Dx" data sheet

The following table provides information about the project.

Coordinator
FORSCHUNGSINSTITUT FUR MOLEKULARE PATHOLOGIE GESELLSCHAFT MBH 

Organization address
address: CAMPUS-VIENNA-BIOCENTER 1
city: WIEN
postcode: 1030
website: www.imp.ac.at

contact info
title: n.a.
name: n.a.
surname: n.a.
function: n.a.
email: n.a.
telephone: n.a.
fax: n.a.

 Coordinator Country Austria [AT]
 Total cost 150˙000 €
 EC max contribution 150˙000 € (100%)
 Programme 1. H2020-EU.1.1. (EXCELLENT SCIENCE - European Research Council (ERC))
 Code Call ERC-2019-PoC
 Funding Scheme ERC-POC-LS
 Starting year 2019
 Duration (year-month-day) from 2019-10-01   to  2021-03-31

 Partnership

Take a look of project's partnership.

# participants  country  role  EC contrib. [€] 
1    FORSCHUNGSINSTITUT FUR MOLEKULARE PATHOLOGIE GESELLSCHAFT MBH AT (WIEN) coordinator 150˙000.00

Map

 Project objective

One of the greatest challenges today is to select the right drug for the right patient at the right time. A lack of diagnostic tools for predicting therapy response currently hampers patient-tailored treatment decisions in the clinic with severe implications for economy and – most importantly – patient survival.

Profiling transcriptional responses to drug treatment is a key method for probing the activity of targeted therapeutics and guiding their use in the clinic. A major limitation of established gene expression profiling techniques (such as microarrays and RNA-seq) is their limited time resolution precluding the distinction of direct from secondary transcriptional responses to drug therapy. This hampers their utility for deciphering drug action and guiding patient-tailored treatment decisions.

To overcome this problem, as part of an ERC-StG project (Systematic in-vivo analysis of chromatin-associated targets in leukemia, 336860) I have co-developed thiol(SH)-linked alkylation for the metabolic sequencing of RNA (SLAMseq) as a rapid, robust and highly scalable method for the unbiased quantification of changes in mRNA production upon cell perturbations. Its unique features (low input cell numbers, short treatment-to-sample time, 1-day protocol library preparation in 96-well format) may qualify SLAMseq as the first method to probe the function, efficacy and selectivity of candidate therapeutics in primary (tumor) cells with unprecedented precision and on a large scale.

In this ERC-PoC project, I propose to establish technical and commercial proof-of-concept for SLAMseq’s application in preclinical and clinical drug development and optimization, and for patient-tailored treatment selection. Upon the successful proof-of-concept for SLAMseq’s application as diagnostic tool, SLAM-Dx has the potential to revolutionize translational research and personalised medicine in a variety of disease areas.

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The information about "SLAM-DX" are provided by the European Opendata Portal: CORDIS opendata.

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