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Opendata, web and dolomites

PANGAIA SIGNED

Pan-genome Graph Algorithms and Data Integration

Total Cost €

EC-Contrib. €

Partnership

Views

PANGAIA project word cloud

Explore the words cloud of the PANGAIA project. It provides you a very rough idea of what is the project "PANGAIA" about.

reaching individual content put urgent nucleotides blocks manner masses points differences practically arrangement accrued sequence question technologically remove graph formally benefits vary dna closely science evolutionarily little exabyte itself sequencing advantages laws paradigms genome letters sense representations biomedically discard source computationally view inspiration genetics representing analyze effect advancing sharing integration pan sufficiently efficient rigorous amounts collections arrange ultra data utmost pointed meantime disruptive strings relatively structures justification coherent compression rewarding wealth full majority redundancies building shift driving idea computer genomes fundamental

Project "PANGAIA" data sheet

The following table provides information about the project.

Coordinator	UNIVERSITA' DEGLI STUDI DI MILANO-BICOCCA Organization address address: PIAZZA DELL'ATENEO NUOVO 1 city: MILANO postcode: 20126 website: www.unimib.it contact info title: n.a. name: n.a. surname: n.a. function: n.a. email: n.a. telephone: n.a. fax: n.a.
Coordinator Country	Italy [IT]
Total cost	1˙140˙800 €
EC max contribution	1˙140˙800 € (100%)
Programme	1. H2020-EU.1.3.3. (Stimulating innovation by means of cross-fertilisation of knowledge)
Code Call	H2020-MSCA-RISE-2019
Funding Scheme	MSCA-RISE
Starting year	2020
Duration (year-month-day)	from 2020-01-01 to 2023-12-31

Partnership

Take a look of project's partnership.

#	participants	country	role	EC contrib. [€]
1	UNIVERSITA' DEGLI STUDI DI MILANO-BICOCCA UNIVERSITA' DEGLI STUDI DI MILANO-BICOCCA Organization address address: PIAZZA DELL'ATENEO NUOVO 1 city: MILANO postcode: 20126 website: www.unimib.it contact info title: n.a. name: n.a. surname: n.a. function: n.a. email: n.a. telephone: n.a. fax: n.a.	IT (MILANO)	coordinator	197˙800.00
2	GENETON S.R.O. GENETON S.R.O. Organization address address: ILKOVICOVA 8 city: BRATISLAVA postcode: 84104 website: n.a. contact info title: n.a. name: n.a. surname: n.a. function: n.a. email: n.a. telephone: n.a. fax: n.a.	SK (BRATISLAVA)	participant	322˙000.00
3	UNIVERSITAET BIELEFELD UNIVERSITAET BIELEFELD Organization address address: UNIVERSITAETSSTRASSE 25 city: BIELEFELD postcode: 33615 website: www.uni-bielefeld.de contact info title: n.a. name: n.a. surname: n.a. function: n.a. email: n.a. telephone: n.a. fax: n.a.	DE (BIELEFELD)	participant	202˙400.00
4	INSTITUT PASTEUR INSTITUT PASTEUR Organization address address: RUE DU DOCTEUR ROUX 25-28 city: PARIS CEDEX 15 postcode: 75724 website: http://www.pasteur.fr contact info title: n.a. name: n.a. surname: n.a. function: n.a. email: n.a. telephone: n.a. fax: n.a.	FR (PARIS CEDEX 15)	participant	147˙200.00
5	STICHTING NEDERLANDSE WETENSCHAPPELIJK ONDERZOEK INSTITUTEN STICHTING NEDERLANDSE WETENSCHAPPELIJK ONDERZOEK INSTITUTEN Organization address address: WINTHONTLAAN 2 city: UTRECHT postcode: 3526 KV website: www.fom.nl contact info title: n.a. name: n.a. surname: n.a. function: n.a. email: n.a. telephone: n.a. fax: n.a.	NL (UTRECHT)	participant	142˙600.00
6	UNIVERZITA KOMENSKEHO V BRATISLAVE UNIVERZITA KOMENSKEHO V BRATISLAVE Organization address address: SAFARIKOVO NAM 6 city: BRATISLAVA postcode: 814 99 website: http://www.uniba.sk contact info title: n.a. name: n.a. surname: n.a. function: n.a. email: n.a. telephone: n.a. fax: n.a.	SK (BRATISLAVA)	participant	128˙800.00
7	ILLUMINA CAMBRIDGE LTD ILLUMINA CAMBRIDGE LTD Organization address address: ILLUMINA CENTRE 19 GRANTA PARK city: GREAT ABINGTON postcode: CB21 9DF website: n.a. contact info title: n.a. name: n.a. surname: n.a. function: n.a. email: n.a. telephone: n.a. fax: n.a.	UK (GREAT ABINGTON)	participant	0.00
8	CORNELL UNIVERSITY CORNELL UNIVERSITY Organization address address: PINE TREE ROAD 373 city: ITHACA NY postcode: 14850 website: www.cornell.edu contact info title: n.a. name: n.a. surname: n.a. function: n.a. email: n.a. telephone: n.a. fax: n.a.	US (ITHACA NY)	partner	0.00
9	NATIONAL UNIVERSITY CORPORATION THEUNIVERSITY OF TOKYO NATIONAL UNIVERSITY CORPORATION THEUNIVERSITY OF TOKYO Organization address address: HONGO BUNKYO KU 7 3 1 city: TOKYO postcode: 113 8656 website: http://interface.t.u-tokyo.ac.jp/ contact info title: n.a. name: n.a. surname: n.a. function: n.a. email: n.a. telephone: n.a. fax: n.a.	JP (TOKYO)	partner	0.00
10	Simon Fraser University Simon Fraser University Organization address address: UNIVERSITY DRIVE 8888 city: BURNABY postcode: V5A 1S6 website: http://www.sfu.ca contact info title: n.a. name: n.a. surname: n.a. function: n.a. email: n.a. telephone: n.a. fax: n.a.	CA (BURNABY)	partner	0.00
11	The Pennsylvania State University The Pennsylvania State University Organization address address: Technology Center Bldg. 110 city: University Park postcode: 16802 website: http://www.research.psu.edu/osp/index.html contact info title: n.a. name: n.a. surname: n.a. function: n.a. email: n.a. telephone: n.a. fax: n.a.	US (University Park)	partner	0.00

Map

Project objective

Genomes are strings over the letters A,C,G,T, which represent nucleotides, the building blocks of DNA. In view of ultra-large amounts of genome sequence data emerging from ever more and technologically rapidly advancing genome sequencing devices—in the meantime, amounts of sequencing data accrued are reaching into the exabyte scale—the driving, urgent question is: how can we arrange and analyze these data masses in a formally rigorous, computationally efficient and biomedically rewarding manner? Graph based data structures have been pointed out to have disruptive benefits over traditional sequence based structures when representing pan-genomes, sufficiently large, evolutionarily coherent collections of genomes. This idea has its immediate justification in the laws of genetics: evolutionarily closely related genomes vary only in relatively little amounts of letters, while sharing the majority of their sequence content. Graph-based pan-genome representations that allow to remove redundancies without having to discard individual differences, make utmost sense. In this project, we will put this shift of paradigms—from sequence to graph based representations of genomes—into full effect. As a result, we can expect a wealth of practically relevant advantages, among which arrangement, analysis, compression, integration and exploitation of genome data are the most fundamental points. In addition, we will also open up a significant source of inspiration for computer science itself.

Deliverables

List of deliverables.
Kick-off meeting report	Other	2020-03-06 16:00:11

Take a look to the deliverables list in detail: detailed list of PANGAIA deliverables.

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The information about "PANGAIA" are provided by the European Opendata Portal: CORDIS opendata.

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