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CoBCoM SIGNED
Computational Brain Connectivity Mapping
Total Cost €
0EC-Contrib. €
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0CoBCoM project word cloud
Explore the words cloud of the CoBCoM project. It provides you a very rough idea of what is the project "CoBCoM" about.
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Project "CoBCoM" data sheet
The following table provides information about the project.
| Coordinator |
INSTITUT NATIONAL DE RECHERCHE ENINFORMATIQUE ET AUTOMATIQUE
Organization address contact info |
| Coordinator Country | France [FR] |
| Project website | https://project.inria.fr/cobcom/ |
| Total cost | 2˙469˙122 € |
| EC max contribution | 2˙469˙122 € (100%) |
| Programme |
1. H2020-EU.1.1. (EXCELLENT SCIENCE - European Research Council (ERC)) |
| Code Call | ERC-2015-AdG |
| Funding Scheme | ERC-ADG |
| Starting year | 2016 |
| Duration (year-month-day) | from 2016-09-01 to 2021-08-31 |
Partnership
Take a look of project's partnership.
| # | ||||
|---|---|---|---|---|
| 1 | INSTITUT NATIONAL DE RECHERCHE ENINFORMATIQUE ET AUTOMATIQUE | FR (LE CHESNAY CEDEX) | coordinator | 2˙469˙122.00 |
Map
Project objective
One third of the burden of all the diseases in Europe is due to problems caused by diseases affecting brain. Although exceptional progress has been obtained for exploring it during the past decades, the brain is still terra-incognita and calls for specic research efforts to better understand its architecture and functioning.
CoBCoM is our response to this great challenge of modern science with the overall goal to develop a joint Dynamical Structural-Functional Brain Connectivity Network (DSF-BCN) solidly grounded on advanced and integrated methods for diffusion Magnetic Resonance Imaging (dMRI) and Electro & Magneto-Encephalography (EEG & MEG).
To take up this grand challenge and achieve new frontiers for brain connectivity mapping, we will develop a new generation of computational models and methods for identifying and characterizing the structural and functional connectivities that will be at the heart of the DSF-BCN. Our strategy is to break with the tradition to incrementally and separately contributing to structure or function and develop a global approach involving strong interactions between structural and functional connectivities. To solve the limited view of the brain provided just by one imaging modality, our models will be developed under a rigorous computational framework integrating complementary non invasive imaging modalities: dMRI, EEG and MEG.
CoBCoM will push far forward the state-of-the-art in these modalities, developing innovative models and ground-breaking processing tools to provide in-fine a joint DSF-BCN solidly grounded on a detailed mapping of the brain connectivity, both in space and time.
Capitalizing on the strengths of dMRI, MEG & EEG methodologies and building on the bio- physical and mathematical foundations of our new generation of computational models, CoBCoM will be applied to high-impact diseases, and its ground-breaking computational nature and added clinical value will open new perspectives in neuroimaging.
Publications
| year | authors and title | journal | last update |
|---|---|---|---|
| 2019 |
Alimi Abib, Deslauriers-Gauthier Samuel, Deriche Rachid Towards validation of diffusion MRI tractography: bridging the resolution gap with 3D Polarized Light Imaging published pages: , ISSN: , DOI: |
ISMRM 2019 - International Society for Magnetic Resonance in Medicine, May 2019 2019 ISMRM | 2019-09-13 |
| 2017 |
Guillermo Gallardo, Nathalie Thérèse Hélène Gayraud, Maureen Clerc, Demian Wassermann Matching parcellations using Optimal Transport: a proof of concept published pages: , ISSN: , DOI: |
Computational Brain Connectivity Mapping – Winter School Workshop 2017, Nov 2017, Juan-les-Pins, France. 2017 CoBCoM | 2019-09-13 |
| 2018 |
Kostiantyn Maksymenko, Maureen Clerc, Théodore Papadopoulo Data-driven cortical clustering to provide a family of plausible solutions to the M/EEG inverse problem published pages: , ISSN: , DOI: |
BIOMAG 2018, Aug 2018, Philadelphia, United States. 2018 BIOMAG | 2019-09-13 |
| 2018 |
Guillermo Gallardo, Nathalie Gayraud, Rachid Deriche, Maureen Clerc, Samuel Deslauriers-Gauthier, Demian Wassermann Solving the Cross-Subject Parcel Matching Problem using Optimal Transport published pages: , ISSN: , DOI: |
International Conference on Medical Image Computing and Computer-Assisted Intervention 2018, 2018 MICCAI | 2019-09-13 |
| 2019 |
Zucchelli Mauro, Parker​ Drew, Deslauriers-Gauthier Samuel, Kim Junghoon, Verma​ Ragini, Deriche​ Rachid A Novel Characterization of Traumatic Brain Injury in White Matter with Diffusion MRI Spherical-Harmonics Rotation Invariants published pages: , ISSN: , DOI: |
ISMRM 2019 - 27th Annual Meeting International Society for Magnetic Resonance in Medicine 2019 ISMRM | 2019-09-13 |
| 2017 |
Alimi Abib, Pizzolato Marco, Fick Rutger HJ., Deriche, Rachid Solving the inclination sign ambiguity in three dimensional polarized light imaging with a pde-based method published pages: , ISSN: , DOI: |
2017 IEEE 14th International Symposium on Biomedical Imaging 2017 ISBI | 2019-06-13 |
| 2019 |
Frigo Matteo, Deslauriers-Gauthier Samuel, Parker Drew, Aziz Abdol, Ismail Ould, Kim John, Verma Ragini, Deriche Rachid Effects of tractography filtering on the topology and interpretability of connectomes published pages: , ISSN: , DOI: |
The Organization for Human Brain Mapping (OHBM) 2019 OHBM | 2019-06-13 |
| 2018 |
Paul Görlach, Evelyne Hubert, Théo Papadopoulo Rational Invariants of Even Ternary Forms Under the Orthogonal Group published pages: 1-47, ISSN: 1615-3375, DOI: 10.1007/s10208-018-9404-1 |
Foundations of Computational Mathematics | 2019-06-13 |
| 2018 |
Matteo Frigo, Guillermo Gallardo, Isa Constantini, Alessandro Daducci, Demian Wassermann, Rachid Deriche, Samuel Deslauriers-Gauthier Reducing false positive connection in tractograms using joint structure-function filtering published pages: , ISSN: , DOI: |
Organization for Human Brain Mapping 2018 OHBM | 2019-06-13 |
| 2018 |
Rutger H.J. Fick, Alexandra Petiet, Mathieu Santin, Anne-Charlotte Philippe, Stephane Lehericy, Rachid Deriche, Demian Wassermann Non-parametric graphnet-regularized representation of dMRI in space and time published pages: 37-53, ISSN: 1361-8415, DOI: 10.1016/j.media.2017.09.002 |
Medical Image Analysis 43 | 2019-06-13 |
| 2017 |
Gabriel Girard, Alessandro Daducci, Laurent Petit, Jean-Philippe Thiran, Kevin Whittingstall, Rachid Deriche, Demian Wassermann, Maxime Descoteaux AxTract: Toward microstructure informed tractography published pages: 5485-5500, ISSN: 1065-9471, DOI: 10.1002/hbm.23741 |
Human Brain Mapping 38/11 | 2019-06-13 |
| 2017 |
Alimi Abib O. Y., Deslauriers-Gauthier Samuel, Deriche Rachid Regularizing the ODF estimate with the Laplace-Beltrami operator in 3D Polarized Light Imaging published pages: , ISSN: , DOI: |
CoBCoM 2017 - Computational Brain Connectivity Mapping Winter School Workshop 2017 CoBCoM | 2019-06-13 |
| 2017 |
Guillermo Gallardo, Rachid Deriche, Demian Wassermann A Novel Parcellation of Human Cerebral Cortex based on Extrinsic Connectivity published pages: , ISSN: , DOI: |
Organization for Human Brain Mapping 2017 OHBM | 2019-06-13 |
| 2017 |
Guillermo Gallardo, William Wells, Rachid Deriche, Demian Wassermann Groupwise structural parcellation of the whole cortex: A logistic random effects model based approach published pages: , ISSN: 1053-8119, DOI: 10.1016/j.neuroimage.2017.01.070 |
NeuroImage Available online 1 February 201 | 2019-06-13 |
| 2019 |
Patryk Filipiak, Rutger Fick, Alexandra Petiet, Mathieu Santin, Anne-Charlotte Philippe, Stephane Lehericy, Philippe Ciuciu, Rachid Deriche, Demian Wassermann Reducing the number of samples in spatiotemporal dMRI acquisition design published pages: 3218-3233, ISSN: 0740-3194, DOI: 10.1002/mrm.27601 |
Magnetic Resonance in Medicine 81/5 | 2019-06-13 |
| 2016 |
Rachid Deriche Computational brain connectivity mapping: A core health and scientific challenge published pages: 122-126, ISSN: 1361-8415, DOI: 10.1016/j.media.2016.06.003 |
Medical Image Analysis 33 | 2019-06-13 |
| 2017 |
Uran Ferizi, Benoit Scherrer, Torben Schneider, Mohammad Alipoor, Odin Eufracio, Rutger H.J. Fick, Rachid Deriche, Markus Nilsson, Ana K. Loya-Olivas, Mariano Rivera, Dirk H.J. Poot, Alonso Ramirez-Manzanares, Jose L. Marroquin, Ariel Rokem, Christian Pötter, Robert F. Dougherty, Ken Sakaie, Claudia Wheeler-Kingshott, Simon K. Warfield, Thomas Witzel, Lawrence L. Wald, José G. Raya, Daniel C. Alexander Diffusion MRI microstructure models with in vivo human brain Connectome data: results from a multi-group comparison published pages: e3734, ISSN: 0952-3480, DOI: 10.1002/nbm.3734 |
NMR in Biomedicine 30/9 | 2019-06-13 |
| 2018 |
Rutger Fick, Demian Wassermann, Rachid Deriche Mipy: An Open-Source Framework to improve reproducibility in BrainMicrostructure Imaging published pages: , ISSN: , DOI: |
Organization for Human Brain Mapping 2018 OHBM | 2019-06-13 |
| 2019 |
Thinhinane Megherbi, Gabriel Girard, Aurobrata Ghosh, Fatima Oulebsir-Boumghar, Rachid Deriche Fiber orientation distribution function from non-negative sparse recovery with quantitative analysis of local fiber orientations and tractography using DW-MRI datasets published pages: 218-234, ISSN: 0730-725X, DOI: 10.1016/j.mri.2018.10.003 |
Magnetic Resonance Imaging 57 | 2019-06-13 |
| 2017 |
Tharindu Ganepola, Zoltan Nagy, Aurobrata Ghosh, Theodore Papadopoulo, Daniel C. Alexander, Martin I. Sereno Using diffusion MRI to discriminate areas of cortical grey matter published pages: , ISSN: 1053-8119, DOI: 10.1016/j.neuroimage.2017.12.046 |
NeuroImage 17 | 2019-06-13 |
| 2017 |
Rutger Fick Advanced dMRI signal modeling for tissue microstructure characterization published pages: , ISSN: , DOI: |
Ph.D - Université Côte d\'Azur 1 | 2019-06-13 |
| 2017 |
Sebastian Hitziger, Maureen Clerc, Sandrine Saillet, Christian Benar, Theodore Papadopoulo Adaptive Waveform Learning: A Framework for Modeling Variability in Neurophysiological Signals published pages: 4324-4338, ISSN: 1053-587X, DOI: 10.1109/TSP.2017.2698415 |
IEEE Transactions on Signal Processing 65/16 | 2019-06-13 |
| 2018 |
Alimi Abib, Fick Rutger, Wassermann Demian, Deriche Rachid Dmipy, a Diffusion Microstructure Imaging toolbox in Python to improve research reproducibility published pages: , ISSN: , DOI: |
Computational Diffusion MRI 2018 - MICCAI Workshop 14 | 2019-04-18 |
| 2018 |
Alimi Abib, Petiet Alexandra , Santin Mathieu, Philippe Anne-Charlotte, Leh{\'e}ricy St{\'e}phane. Deriche Rachid, Wassermann Demian Towards the assessment of myelination using time-dependent diffusion MRI indices} published pages: , ISSN: , DOI: |
ISMRM 2018 - 26th International Society for Magnetic Resonance in Medicine 2018 ISMRM | 2019-04-18 |
| 2019 |
Abib Alimi, Samuel Deslauriers-Gauthier, F. Matuschke, D. Schmitz, M. Axer, Rachid Deriche Analytical Fiber ODF Reconstruction in 3D Polarized Light Imaging: Performance Assessment published pages: , ISSN: , DOI: |
ISBI 2019 - 16th IEEE International Symposium on Biomedical Imaging 2019 ISBI | 2019-04-18 |
| 2018 |
Matteo Frigo, Isa Costantini, Rachid Deriche, Samuel Deslauriers-Gauthier Resolving the crossing/kissing fiber ambiguity using Functionally Informed COMMIT published pages: , ISSN: , DOI: |
Computational Diffusion MRI 2018 - MICCAI Workshop 14 | 2019-04-18 |
| 2019 |
Abib Alimi, Samuel Deslauriers-Gauthier, Rachid Deriche Towards validation of diffusion MRI tractography: bridging the resolution gap with 3D Polarized Light Imaging published pages: , ISSN: , DOI: |
ISMRM 2019 - 27th International Society for Magnetic Resonance in Medicine} 2019 ISMRM | 2019-04-18 |
| 2017 |
Patryk Filipiak, Rutger Fick, Alexandra Petiet, Mathieu Santin, Anne-Charlotte Philippe, Stephane Lehericy, Rachid Deriche, Demian Wassermann Spatio-Temporal dMRI Acquisition Design: Reducing the Number of $qtau$ Samples Through a Relaxed Probabilistic Model published pages: , ISSN: , DOI: |
Computational Diffusion MRI, MICCAI Workshop 2017 2017 CDMRI | 2019-04-16 |
| 2019 |
Patryk Filipiak, Rutger Fick, Alexandra Petiet, Mathieu Santin, Anne-Charlotte Philippe, Stéphane Lehéricy, Rachid Deriche, Demian Wassermann Coarse-Grained Spatiotemporal Acquisition Design for Diffusion MRI published pages: , ISSN: , DOI: |
ISBI 2019 - 16th IEEE International Symposium on Biomedical Imaging 2019 ISBI | 2019-04-16 |
| 2016 |
Brahim Belaoucha , Théodore Papadopoulo Iterative two-stage approach to estimate sources and their interactions published pages: , ISSN: , DOI: |
20th International Conference on Biomagnetism (BIOMAG2016), 2016 BIOMAG | 2019-04-16 |
| 2018 |
Isa Costantini , Patryk Filipiak , Kostiantyn Maksymenko , Samuel Deslauriers-Gauthier, Rachid Deriche L1-Norm Regularized Deconvolution of Functional MRI BOLD Signal published pages: , ISSN: , DOI: |
C@UCA | 2019-04-16 |
| 2017 |
Guillermo Gallardo , Rachid Deriche , Demian Wassermann A Novel Atlas of Human Cerebral Cortex based on Extrinsic Connectivity published pages: , ISSN: , DOI: |
OHBM 2017 - Organization for Human Brain Mapping 2017 Annual Meeting 2017 OHBM | 2019-04-18 |
| 2019 |
Mauro Zucchelli, Drew Parker​, Samuel Deslauriers-Gauthier, Junghoon Joh Kim, J Ragini Verma, Rachid Deriche A Novel Characterization of Traumatic Brain Injury in White Matter with Diffusion MRI Spherical-Harmonics Rotation Invariants published pages: , ISSN: , DOI: |
ISMRM 2019 - 27th International Society for Magnetic Resonance in Medicine 2019 ISMRM | 2019-04-16 |
| 2018 |
Samuel Deslauriers-Gauthier, Drew Parker, François Rheault, Rachid Deriche, Steven Brem, Maxime Descoteaux, and Ragini Verma Edema-informed anatomically constrained particle filter tractography published pages: 375-382, ISSN: , DOI: |
MICCAI 2018 - 21st International Conference, Medical Image Computing and Computer Assisted Intervention LNCS 11072 | 2019-04-18 |
| 2016 |
Rutger Fick , Alexandra Petiet , Mathieu Santin , Anne-Charlotte Philippe , Stéphane Lehericy ,, Rachid Deriche , Demian Wassermann Multi-Spherical MRI: Breaking the Boundaries of Diffusion Time published pages: , ISSN: , DOI: |
ISMRM Workshop on: Breaking the Barriers of Diffusion MRI 2016 ISMRM | 2019-04-16 |
| 2018 |
Mauro Zucchelli, Samuel Deslauriers-Gauthier, Rachid Deriche A Closed-Form Solution of Rotation Invariant Spherical Harmonic Features in Diffusion MRI published pages: , ISSN: , DOI: |
Computational Diffusion MRI - MICCAI Workshop 2018 14 | 2019-04-16 |
| 2018 |
Patryk Filipiak , Rutger Fick , Alexandra Petiet , Mathieu Santin , Anne-Charlotte Philippe , Stéphane Lehéricy , Rachid Deriche , Demian Wassermann Spatio-Temporal dMRI Acquisition Design: Reducing the Number of Samples published pages: , ISSN: , DOI: |
ISMRM 2018: 26h International Society for Magnetic Resonance in Medicine 2018 ISMRM | 2019-04-16 |
| 2019 |
Samuel Deslauriers-Gauthier, Rachid Deriche Estimation of Axon Conduction Delay, Conduction Speed, and Diameter from Information Flow using Diffusion MRI and MEG published pages: , ISSN: , DOI: |
ISMRM 2019 - 27th International Society for Magnetic Resonance in Medicine Annual Meeting and Exhibition 2019 ISMRM | 2019-04-18 |
| 2018 |
Kostiantyn Maksymenko, Maureen Clerc, Th{\'e}odore Papadopoulo Fast Approximation of EEG Forward Problem and Application to Tissue Conductivity Estimation published pages: , ISSN: , DOI: |
2019-04-16 | |
| 2018 |
Kostiantyn Maksymenko, Maureen Clerc, Th{\'e}odore Papadopoulo Data-driven cortical clustering to provide a family of plausible solutions to M/EEG inverse problem published pages: , ISSN: , DOI: |
iTWIST: international Traveling Workshop on Interactions between low-complexity data models and Sensing Techniques 2018 ITWIST | 2019-04-16 |
| 2017 |
Kostiantyn Maksymenko, Th{\'e}odore Papadopoulo, Samuel Deslauriers-Gauthier White matter fiber bundles as a source model in the MEG inverse problem published pages: , ISSN: , DOI: |
COBCOM 2017 - Computational Brain Connectivity Mapping, Winter School Workshop 2017 COBCOM | 2019-04-18 |
| 2018 |
Isa Costantini , Patryk Filipiak , Kostiantyn Maksymenko , Samuel Deslauriers-Gauthier , Rachid Deriche fMRI Deconvolution via Temporal Regularization using a LASSO model and the LARS algorithm published pages: , ISSN: , DOI: |
EMBC\'18 - 40th Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC) 2018 EMBC | 2019-04-16 |
| 2017 |
Isa Costantini, Patryk Filipiak, Kostiantyn Maksymenko, Rachid Deriche, Samuel Deslauriers-Gauthier Deconvolution of fMRI BOLD signal in time-domain using an exponential operator and Lasso optimization published pages: , ISSN: , DOI: |
COBCOM 2017 - Computational Brain Connectivity Mapping, Winter School Workshop 2017 COBCOM | 2019-04-16 |
| 2019 |
Isa Costantini, Samuel Deslauriers-Gauthier, Rachid Deriche Novel 4-D Algorithm for Functional MRI Image Regularization using Partial Differential Equations published pages: , ISSN: , DOI: |
ISMRM 2019 - 27th International Society for Magnetic Resonance in Medicine Annual Meeting and Exhibition 2019 ISMRM | 2019-04-16 |
| 2018 |
Guillermo Gallardo , Sylvain Bouix, Demian Wassermann Diffusion Driven Label Fusion for White Matter Multi-Atlas Segmentation published pages: , ISSN: , DOI: |
OHBM 2018 - Organization for Human Brain Mapping, 2018 OHBM | 2019-04-16 |
| 2017 |
Rutger H. J. Fick, Alexandra Petiet, Mathieu Santin, Anne-Charlotte Philippe, Stephane Lehericy, Rachid Deriche, Demian Wassermann Multi-Spherical Diffusion MRI: An in-vivo Test- Retest Study of Time-Dependent q-space Indices published pages: , ISSN: , DOI: |
ISMRM 2017: 25th International Society for Magnetic Resonance in Medicine 2017 ISMRM | 2019-04-16 |
| 2019 |
Isa Costantini, Samuel Deslauriers-Gauthier, Rachid Deriche Deconvolution of fMRI Data using a Paradigm Free Iterative Approach based on Partial Differential Equations published pages: , ISSN: , DOI: |
OHBM 2019 - Organization for Human Brain Mapping 2019 Annual Meeting 2019 OHBM | 2019-04-16 |
| 2017 |
Guillermo Gallardo, Demian Wassermann, Rachid Deriche, Maxime Descoteaux, Samuel Deslauriers-Gauthier Information Flow in the White Matter During a Motor Task: A Structural Connectivity Driven Approach published pages: , ISSN: , DOI: |
Organization for Human Brain Mapping \' 2017 OHBM | 2019-04-16 |
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