Explore the words cloud of the SYSCID project. It provides you a very rough idea of what is the project "SYSCID" about.
The following table provides information about the project.
Coordinator |
CHRISTIAN-ALBRECHTS-UNIVERSITAET ZU KIEL
Organization address contact info |
Coordinator Country | Germany [DE] |
Project website | http://www.syscid.eu |
Total cost | 16˙018˙111 € |
EC max contribution | 14˙456˙236 € (90%) |
Programme |
1. H2020-EU.3.1.1. (Understanding health, wellbeing and disease) |
Code Call | H2020-SC1-2016-RTD |
Funding Scheme | RIA |
Starting year | 2017 |
Duration (year-month-day) | from 2017-01-01 to 2022-03-31 |
Take a look of project's partnership.
'The SYSCID consortium aims to develop a systems medicine approach for disease prediction in CID. We will focus on three major CID indications with distinct characteristics, yet a large overlap of their molecular risk map: inflammatory bowel disease, systemic lupus erythematodes and rheumatoid arthritis. We have joined 15 partners from major cohorts and initiatives in Europe (e.g.IHEC, ICGC, TwinsUK and Meta-HIT) to investigate human data sets on three major levels of resolution: whole blood signatures, signatures from purified immune cell types (with a focus on CD14 and CD4/CD8) and selected single cell level analyses. Principle data layers will comprise SNP variome, methylome, transcriptome and gut microbiome. SYSCID employs a dedicated data management infrastructure, strong algorithmic development groups (including an SME for exploitation of innovative software tools for data deconvolution) and will validate results in independent retrospective and prospective clinical cohorts. Using this setup we will focus on three fundamental aims : (i) the identification of shared and unique 'core disease signatures” which are associated with the disease state and independent of temporal variation, (ii) the generation of 'predictive models of disease outcome'- builds on previous work that pathways/biomarkers for disease outcome are distinct from initial disease risk and may be shared across diseases to guide therapy decisions on an individual patient basis, (iii) 'reprogramming disease'- will identify and target temporally stable epigenetic alterations in macrophages and lymphocytes in epigenome editing approaches as biological validation and potential novel therapeutic tool . Thus, SYSCID will foster the development of solid biomarkers and models as stratification in future long-term systems medicine clinical trials but also investigate new causative therapies by editing the epigenome code in specific immune cells, e.g. to alleviate macrophage polarization defects.'
Public project website | Websites, patent fillings, videos etc. | 2020-04-08 14:24:38 |
Take a look to the deliverables list in detail: detailed list of SYSCID deliverables.
year | authors and title | journal | last update |
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2019 |
Nikolaos I Panousis, George K Bertsias, Halit Ongen, Irini Gergianaki, Maria G Tektonidou, Maria Trachana, Luciana Romano-Palumbo, Deborah Bielser, Cedric Howald, Cristina Pamfil, Antonis Fanouriakis, Despoina Kosmara, Argyro Repa, Prodromos Sidiropoulos, Emmanouil T Dermitzakis, Dimitrios T Boumpas Combined genetic and transcriptome analysis of patients with SLE: distinct, targetable signatures for susceptibility and severity published pages: 1079-1089, ISSN: 0003-4967, DOI: 10.1136/annrheumdis-2018-214379 |
Annals of the Rheumatic Diseases 78/8 | 2020-04-08 |
2019 |
Dionysis Nikolopoulos, Antonis Fanouriakis, Dimitrios T. Boumpas Update on the pathogenesis of central nervous system lupus published pages: 669-677, ISSN: 1040-8711, DOI: 10.1097/bor.0000000000000655 |
Current Opinion in Rheumatology 31/6 | 2020-04-08 |
2019 |
Goran Josipović, Vanja Tadić, Marija Klasić, Vladimir Zanki, Ivona BeÄeheli, Felicia Chung, Akram Ghantous, Toma Keser, Josip Madunić, Maria BoÅ¡ković, Gordan Lauc, Zdenko Herceg, Aleksandar Vojta, Vlatka ZoldoÅ¡ Antagonistic and synergistic epigenetic modulation using orthologous CRISPR/dCas9-based modular system published pages: 9637-9657, ISSN: 0305-1048, DOI: 10.1093/nar/gkz709 |
Nucleic Acids Research 47/18 | 2020-04-08 |
2019 |
Mohamad Jawhara, Signe Bek Sørensen, Berit Lilienthal Heitmann, Vibeke Andersen Biomarkers of Whole-Grain and Cereal-Fiber Intake in Human Studies: A Systematic Review of the Available Evidence and Perspectives published pages: 2994, ISSN: 2072-6643, DOI: 10.3390/nu11122994 |
Nutrients 11/12 | 2020-04-08 |
2019 |
R. J. M. Bashford-Rogers, L. Bergamaschi, E. F. McKinney, D. C. Pombal, F. Mescia, J. C. Lee, D. C. Thomas, S. M. Flint, P. Kellam, D. R. W. Jayne, P. A. Lyons, K. G. C. Smith Analysis of the B cell receptor repertoire in six immune-mediated diseases published pages: 122-126, ISSN: 0028-0836, DOI: 10.1038/s41586-019-1595-3 |
Nature 574/7776 | 2020-04-08 |
2019 |
Alyce C. Russell, Agnieszka Kepka, Irena Trbojević-AkmaÄić, Ivo Ugrina, Manshu Song, Jennie Hui, Michael Hunter, Simon M. Laws, Gordan Lauc, Wei Wang Increased central adiposity is associated with pro-inflammatory immunoglobulin G N-glycans published pages: 110-115, ISSN: 0171-2985, DOI: 10.1016/j.imbio.2018.10.002 |
Immunobiology 224/1 | 2020-04-08 |
2019 |
Sander Tuit, Camilla Salvagno, Theodore S. Kapellos, Cheei-Sing Hau, Lea Seep, Marie Oestreich, Kathrin Klee, Karin E. de Visser, Thomas Ulas, Joachim L. Schultze Transcriptional Signature Derived from Murine Tumor-Associated Macrophages Correlates with Poor Outcome in Breast Cancer Patients published pages: 1221-1235.e5, ISSN: 2211-1247, DOI: 10.1016/j.celrep.2019.09.067 |
Cell Reports 29/5 | 2020-04-08 |
2020 |
Stefanie Warnat-Herresthal, Konstantinos Perrakis, Bernd Taschler, Matthias Becker, Kevin Baßler, Marc Beyer, Patrick Günther, Jonas Schulte-Schrepping, Lea Seep, Kathrin Klee, Thomas Ulas, Torsten Haferlach, Sach Mukherjee, Joachim L. Schultze Scalable Prediction of Acute Myeloid Leukemia Using High-Dimensional Machine Learning and Blood Transcriptomics published pages: 100780, ISSN: 2589-0042, DOI: 10.1016/j.isci.2019.100780 |
iScience 23/1 | 2020-04-08 |
2018 |
Yukihide Momozawa, Julia Dmitrieva, Emilie Théâtre, Valérie Deffontaine, Souad Rahmouni, Benoît Charloteaux, François Crins, Elisa Docampo, Mahmoud Elansary, Ann-Stephan Gori, Christelle Lecut, Rob Mariman, Myriam Mni, Cécile Oury, Ilya Altukhov, Dmitry Alexeev, Yuri Aulchenko, Leila Amininejad, Gerd Bouma, Frank Hoentjen, Mark Löwenberg, Bas Oldenburg, Marieke J. Pierik, Andrea E. vander Meulen-de Jong, C. Janneke van der Woude, Marijn C. Visschedijk, Mark Lathrop, Jean-Pierre Hugot, Rinse K. Weersma, Martine De Vos, Denis Franchimont, Severine Vermeire, Michiaki Kubo, Edouard Louis, Michel Georges IBD risk loci are enriched in multigenic regulatory modules encompassing putative causative genes published pages: , ISSN: 2041-1723, DOI: 10.1038/s41467-018-04365-8 |
Nature Communications 9/1 | 2020-04-08 |
2018 |
Christensen, Robin; Heitmann, Berit L; Andersen, Karina Winther; Nielsen, Ole Haagen; Sørensen, Signe Bek; Jawhara, Mohamad; Bygum, Anette; Hvid, Lone; Grauslund, Jakob; Wied, Jimmi; Glerup, Henning; Fredberg, Ulrich; Villadsen, Jan Alexander; Kjær, Søren Geill; Fallingborg, Jan; Moghadd, Seyed A G R; Knudsen, Torben; Brodersen, Jacob; Frøjk, Jesper; Dahlerup, Jens Frederik; Bojesen, Anders Bo; Sorensen, Grith Lykke; Thiel, Steffen; Færgeman, Nils J; Brandslund, Ivan; Bennike, Tue Bjerg; Stensballe, Allan; Schmidt, Erik Berg; Franke, Andre; Ellinghaus, David; Rosenstiel, Philip; Raes, Jeroen; Boye, Mette; Werner, Lars; Nielsen, Charlotte Lindgaard; Munk, Heidi Lausten; Nexøe, Anders Bathum; Ellingsen, Torkell; Holmskov, Uffe; Kjeldsen, Jens; Andersen, Vibeke Impact of red and processed meat and fibre intake on treatment outcomes among patients with chronic inflammatory diseases:protocol for a prospective cohort study of prognostic factors and personalised medicine published pages: , ISSN: 2044-6055, DOI: 10.1136/bmjopen-2017-018166 |
BMJ Open 1 | 2020-04-08 |
2018 |
Sebastian Zeissig, Elisa Rosati, C Marie Dowds, Konrad Aden, Johannes Bethge, Berenice Schulte, Wei Hung Pan, Neha Mishra, Maaz Zuhayra, Marlies Marx, Maren Paulsen, Anne Strigli, Claudio Conrad, Dörthe Schuldt, Anupam Sinha, Henriette Ebsen, Sabin-Christin Kornell, Susanna Nikolaus, Alexander Arlt, Dieter Kabelitz, Mark Ellrichmann, Ulf Lützen, Philip C Rosenstiel, Andre Franke, Stefan Schreiber Vedolizumab is associated with changes in innate rather than adaptive immunity in patients with inflammatory bowel disease published pages: , ISSN: 0017-5749, DOI: 10.1136/gutjnl-2018-316023 |
Gut | 2020-04-08 |
2018 |
Morgane Sonia Thion, Donovan Low, Aymeric Silvin, Jinmiao Chen, Pauline Grisel, Jonas Schulte-Schrepping, Ronnie Blecher, Thomas Ulas, Paola Squarzoni, Guillaume Hoeffel, Fanny Coulpier, Eleni Siopi, Friederike Sophie David, Claus Scholz, Foo Shihui, Josephine Lum, Arlaine Anne Amoyo, Anis Larbi, Michael Poidinger, Anne Buttgereit, Pierre-Marie Lledo, Melanie Greter, Jerry Kok Yen Chan, Ido Amit, Marc Beyer, Joachim Ludwig Schultze, Andreas Schlitzer, Sven Pettersson, Florent Ginhoux, Sonia Garel Microbiome Influences Prenatal and Adult Microglia in a Sex-Specific Manner published pages: 500-516.e16, ISSN: 0092-8674, DOI: 10.1016/j.cell.2017.11.042 |
Cell 172/3 | 2020-04-08 |
2018 |
Shaza B Zaghlool, Dennis O Mook-Kanamori, Sara Kader, Nisha Stephan, Anna Halama, Rudolf Engelke, Hina Sarwath, Eman K Al-Dous, Yasmin A Mohamoud, Werner Roemisch-Margl, Jerzy Adamski, Gabi Kastenmüller, Nele Friedrich, Alessia Visconti, Pei-Chien Tsai, Tim Spector, Jordana T Bell, Mario Falchi, Annika Wahl, Melanie Waldenberger, Annette Peters, Christian Gieger, Marija Pezer, Gordan Lauc, Johannes Graumann, Joel A Malek, Karsten Suhre Deep molecular phenotypes link complex disorders and physiological insult to CpG methylation published pages: 1106-1121, ISSN: 0964-6906, DOI: 10.1093/hmg/ddy006 |
Human Molecular Genetics 27/6 | 2020-04-08 |
2018 |
Susanna Nikolaus, Georg H. Waetzig, Sven Butzin, Monika Ziolkiewicz, Natalie Al-Massad, Florian Thieme, Ulf Lövgren, Birgitte B. Rasmussen, Torsten M. Reinheimer, Dirk Seegert, Philip Rosenstiel, Silke Szymczak, Stefan Schreiber Evaluation of interleukin-6 and its soluble receptor components sIL-6R and sgp130 as markers of inflammation in inflammatory bowel diseases published pages: 927-936, ISSN: 0179-1958, DOI: 10.1007/s00384-018-3069-8 |
International Journal of Colorectal Disease 33/7 | 2020-04-08 |
2018 |
JN Liu, M Dolikun, J Å tambuk, I Trbojević-AkmaÄić, J Zhang, H Wang, DQ Zheng, XY Zhang, HL Peng, ZY Zhao, D Liu, Y Sun, Q Sun, QH Li, JX Zhang, M Sun, WJ Cao, A MomÄilović, G. Razdorov, LJ Wu, A Russell, YX Wang, MS Song, G Lauc, W Wang The association between subclass-specific IgG Fc N-glycosylation profiles and hypertension in the Uygur, Kazak, Kirgiz, and Tajik populations published pages: , ISSN: 0950-9240, DOI: 10.1038/s41371-018-0071-0 |
Journal of Human Hypertension | 2020-04-08 |
2018 |
Ivan Gudelj, Perttu P. Salo, Irena Trbojević-AkmaÄić, Malena Albers, Dragan Primorac, Markus Perola, Gordan Lauc Low galactosylation of IgG associates with higher risk for future diagnosis of rheumatoid arthritis during 10 years of follow-up published pages: 2034-2039, ISSN: 0925-4439, DOI: 10.1016/j.bbadis.2018.03.018 |
Biochimica et Biophysica Acta (BBA) - Molecular Basis of Disease 1864/6 | 2020-04-08 |
2018 |
Kate Joanne Howell, Judith Kraiczy, Komal M. Nayak, Marco Gasparetto, Alexander Ross, Claire Lee, Tim N. Mak, Bon-Kyoung Koo, Nitin Kumar, Trevor Lawley, Anupam Sinha, Philip Rosenstiel, Robert Heuschkel, Oliver Stegle, Matthias Zilbauer DNA Methylation and Transcription Patterns in Intestinal Epithelial Cells From Pediatric Patients With Inflammatory Bowel Diseases Differentiate Disease Subtypes and Associate With Outcome published pages: 585-598, ISSN: 0016-5085, DOI: 10.1053/j.gastro.2017.10.007 |
Gastroenterology 154/3 | 2020-04-08 |
2018 |
Jasminka KriÅ¡tić, Olga O. Zaytseva, Ramesh Ram, Quang Nguyen, Mislav Novokmet, Frano VuÄković, Marija Vilaj, Irena Trbojević-AkmaÄić, Marija Pezer, Kathleen M. Davern, Grant Morahan, Gordan Lauc Profiling and genetic control of the murine immunoglobulin G glycome published pages: 516-524, ISSN: 1552-4450, DOI: 10.1038/s41589-018-0034-3 |
Nature Chemical Biology 14/5 | 2020-04-08 |
2017 |
Elisa Rosati, C Marie Dowds, Evaggelia Liaskou, Eva Kristine Klemsdal Henriksen, Tom H Karlsen, Andre Franke Overview of methodologies for T-cell receptor repertoire analysis published pages: , ISSN: 1472-6750, DOI: 10.1186/s12896-017-0379-9 |
BMC Biotechnology 17/1 | 2020-04-08 |
2017 |
Doris Vandeputte, Gunter Kathagen, Kevin D’hoe, Sara Vieira-Silva, Mireia Valles-Colomer, João Sabino, Jun Wang, Raul Y. Tito, Lindsey De Commer, Youssef Darzi, Séverine Vermeire, Gwen Falony, Jeroen Raes Quantitative microbiome profiling links gut community variation to microbial load published pages: 507-511, ISSN: 0028-0836, DOI: 10.1038/nature24460 |
Nature 551 | 2020-04-08 |
2018 |
Marko Kosicek, Ivan Gudelj, Anita Horvatic, Tanja Jovic, Frano Vuckovic, Gordan Lauc, Silva Hecimovic N-glycome of the Lysosomal Glycocalyx is Altered in Niemann-Pick Type C Disease (NPC) Model Cells published pages: 631-642, ISSN: 1535-9476, DOI: 10.1074/mcp.RA117.000129 |
Molecular & Cellular Proteomics 17/4 | 2020-04-08 |
2018 |
Mirna Å imurina, Noortje de Haan, Frano VuÄković, Nicholas A. Kennedy, Jerko Å tambuk, David Falck, Irena Trbojević-AkmaÄić, Florent Clerc, Genadij Razdorov, Anna Khon, Anna Latiano, Renata D\'Incà , Silvio Danese, Stephan Targan, Carol Landers, Marla Dubinsky, Dermot P.B. McGovern, Vito Annese, Manfred Wuhrer, Gordan Lauc, Harry Campbell, Vlatka ZoldoÅ¡, Iain K. Permberton, Daniel Kolarich, Daryl L. Fernandes, Evropi Theorodorou, Victoria Merrick, Daniel I. Spencer, Richard A. Gardner, Ray Doran, Archana Shubhakar, Ray Boyapati, Igor Rudan, Paolo Lionetti, Jasminka KriÅ¡tić, Mislav Novokmet, Maja PuÄić-Baković, Olga Gornik, Angelo Andriulli, Laura Cantoro, Giancarlo Sturniolo, Gionata Fiorino, Natalia Manetti, Ian D. Arnott, Colin L. Noble, Charlie W. Lees, Alan G. Shand, Gwo-Tzer Ho, Malcolm G. Dunlop, Lee Murphy, Jude Gibson, Louise Evenden, Nicola Wrobel, Tamara Gilchrist, Angie Fawkes, Guinevere S.M. Kammeijer, Aleksandar Vojta, Ivana Samaržija, Dora Markulin, Marija Klasić, Paula Dobrinić, Yurii Aulchenko, Tim van den Heuve, Daisy Jonkers, Marieke Pierik Glycosylation of Immunoglobulin G Associates With Clinical Features of Inflammatory Bowel Diseases published pages: 1320-1333.e10, ISSN: 0016-5085, DOI: 10.1053/j.gastro.2018.01.002 |
Gastroenterology 154/5 | 2020-04-08 |
2018 |
Joachim L. Schultze, Philip Rosenstiel Systems Medicine in Chronic Inflammatory Diseases published pages: 608-613, ISSN: 1074-7613, DOI: 10.1016/j.immuni.2018.03.022 |
Immunity 48/4 | 2020-04-08 |
2017 |
Felix Sommer, Jacqueline Moltzau Anderson, Richa Bharti, Jeroen Raes, Philip Rosenstiel The resilience of the intestinal microbiota influences health and disease published pages: 630-638, ISSN: 1740-1526, DOI: 10.1038/nrmicro.2017.58 |
Nature Reviews Microbiology 15/10 | 2020-04-08 |
2017 |
Xia Shen, Lucija Klarić, Sodbo Sharapov, Massimo Mangino, Zheng Ning, Di Wu, Irena Trbojević-AkmaÄić, Maja PuÄić-Baković, Igor Rudan, Ozren PolaÅ¡ek, Caroline Hayward, Timothy D. Spector, James F. Wilson, Gordan Lauc, Yurii S. Aulchenko Multivariate discovery and replication of five novel loci associated with Immunoglobulin G N-glycosylation published pages: , ISSN: 2041-1723, DOI: 10.1038/s41467-017-00453-3 |
Nature Communications 8/1 | 2020-04-08 |
2017 |
Susanna Nikolaus, Berenice Schulte, Natalie Al-Massad, Florian Thieme, Dominik M. Schulte, Johannes Bethge, Ateequr Rehman, Florian Tran, Konrad Aden, Robert Häsler, Natalie Moll, Gregor Schütze, Markus J. Schwarz, Georg H. Waetzig, Philip Rosenstiel, Michael Krawczak, Silke Szymczak, Stefan Schreiber Increased Tryptophan Metabolism Is Associated With Activity of Inflammatory Bowel Diseases published pages: 1504-1516.e2, ISSN: 0016-5085, DOI: 10.1053/j.gastro.2017.08.028 |
Gastroenterology 153/6 | 2020-04-08 |
2017 |
Vibeke Andersen, Uffe Holmskov, Signe Sørensen, Mohamad Jawhara, Karina Andersen, Anette Bygum, Lone Hvid, Jakob Grauslund, Jimmi Wied, Henning Glerup, Ulrich Fredberg, Jan Villadsen, Søren Kjær, Jan Fallingborg, Seyed Moghadd, Torben Knudsen, Jacob Brodersen, Jesper Frøjk, Jens Dahlerup, Ole Nielsen, Robin Christensen, Anders Bojesen, Grith Sorensen, Steffen Thiel, Nils Færgeman, Ivan Brandslund, Allan Stensballe, Erik Schmidt, Andre Franke, David Ellinghaus, Philip Rosenstiel, Jeroen Raes, Berit Heitmann, Mette Boye, Charlotte Nielsen, Lars Werner, Jens Kjeldsen, Torkell Ellingsen A Proposal for a Study on Treatment Selection and Lifestyle Recommendations in Chronic Inflammatory Diseases: A Danish Multidisciplinary Collaboration on Prognostic Factors and Personalised Medicine published pages: 499, ISSN: 2072-6643, DOI: 10.3390/nu9050499 |
Nutrients 9/5 | 2020-04-08 |
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The information about "SYSCID" are provided by the European Opendata Portal: CORDIS opendata.