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DIMR SIGNED

Data Intensive Modelling of the Rhizosphere Processes

Total Cost €

EC-Contrib. €

Partnership

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Outcomes and
results

DIMR project word cloud

Explore the words cloud of the DIMR project. It provides you a very rough idea of what is the project "DIMR" about.

image efforts flooding nature quantities rely crops free rhizosphere fundamental imaging interactions erc otherwise sound scales innovative contains climate root ecosystem mathematically reducing influence roots multiple hydrological chemical model exuded ecosystems integration opaque predict quantitative difficult data effect mucilage strategies atmosphere obviously interface breeding fertility medium morphology mycorrhizae scientific realised physical soil mechanics surprising homogenisation services carbon nutrient underpinning techniques risk rain benefit questions laws interaction experimental function host ing fusion plant structural made heavy always released micro combination science translate single buffers bio

Project "DIMR" data sheet

The following table provides information about the project.

Coordinator	UNIVERSITY OF SOUTHAMPTON Organization address address: Highfield city: SOUTHAMPTON postcode: SO17 1BJ website: http://www.southampton.ac.uk contact info title: n.a. name: n.a. surname: n.a. function: n.a. email: n.a. telephone: n.a. fax: n.a.
Coordinator Country	United Kingdom [UK]
Project website	https://www.southampton.ac.uk/engineering/about/staff/tr1r07.page
Total cost	1˙996˙246 €
EC max contribution	1˙996˙246 € (100%)
Programme	1. H2020-EU.1.1. (EXCELLENT SCIENCE - European Research Council (ERC))
Code Call	ERC-2014-CoG
Funding Scheme	ERC-COG
Starting year	2015
Duration (year-month-day)	from 2015-09-01 to 2021-08-31

Partnership

Take a look of project's partnership.

#	participants	country	role	EC contrib. [€]
1	UNIVERSITY OF SOUTHAMPTON UNIVERSITY OF SOUTHAMPTON Organization address address: Highfield city: SOUTHAMPTON postcode: SO17 1BJ website: http://www.southampton.ac.uk contact info title: n.a. name: n.a. surname: n.a. function: n.a. email: n.a. telephone: n.a. fax: n.a.	UK (SOUTHAMPTON)	coordinator	1˙996˙246.00

Map

Project objective

We rely on soil to support the crops on which we depend. Less obviously we also rely on soil for a host of 'free services' from which we benefit. For example, soil buffers the hydrological system greatly reducing the risk of flooding after heavy rain; soil contains very large quantities of carbon, which would otherwise be released into the atmosphere where it would contribute to climate change. Given its importance it is not surprising that soil, especially its interaction with plant roots, has been a focus of many researchers. However the complex and opaque nature of soil has always made it a difficult medium to study. In this ERC research program I will develop a state of the art image based model of the physical and chemical properties of soil and soil-root interactions, i.e., a quantitative, model of the rhizosphere based on fundamental scientific laws. This will be realised by a combination of innovative, data rich fusion of structural and chemical imaging methods, integration of experimental efforts to both support and challenge modelling capabilities at the scale of underpinning bio-physical processes, and application of mathematically sound homogenisation/scale-up techniques to translate knowledge from rhizosphere to field scale. The specific science questions I will address with these techniques are: (1) how does the soil around the root, the rhizosphere, function and influence the soil ecosystems at multiple scales, (2) what is the role of root-soil interface micro morphology and mycorrhizae on plant nutrient uptake, (3) what is the effect of plant exuded mucilage on the soil morphology, mechanics and resulting field and ecosystem scale soil function and (4) how to translate this knowledge from the single root scale to root system, field and ecosystem scale in order to predict how the climate change, different soil management strategies and plant breeding will influence the soil fertility.

Publications

List of publications.
year	authors and title	journal	last update
2019	D. M. McKay Fletcher, R. Shaw, A. R. SÃ¡nchez-RodrÃguez, K. R. Daly, A. van Veelen, D. L. Jones, T. Roose Quantifying citrate-enhanced phosphate root uptake using microdialysis published pages: , ISSN: 0032-079X, DOI: 10.1007/s11104-019-04376-4	Plant and Soil	2020-03-13
2019	Daniel M. McKay Fletcher, Samuel D. Keyes, Keith R. Daly, Arjen van Veelen, Tiina Roose A multi image-based approach for modelling plant-fertiliser interaction published pages: 100152, ISSN: 2452-2198, DOI: 10.1016/j.rhisph.2019.100152	Rhizosphere 10	2020-03-13
2019	M. Naveed, M. A. Ahmed, P. Benard, L. K. Brown, T. S. George, A. G. Bengough, T. Roose, N. Koebernick, P. D. Hallett Surface tension, rheology and hydrophobicity of rhizodeposits and seed mucilage influence soil water retention and hysteresis published pages: 65-81, ISSN: 0032-079X, DOI: 10.1007/s11104-019-03939-9	Plant and Soil 437/1-2	2020-03-13
2019	Arjen Veelen, Nicolai Koebernick, Callum S. Scotson, Daniel McKayâ€Fletcher, Thomas Huthwelker, Camelia N. Borca, J. Fred W. Mosselmans, Tiina Roose Rootâ€induced soil deformation influences Fe, S and P: rhizosphere chemistry investigated using synchrotron XRF and XANES published pages: 1476-1490, ISSN: 0028-646X, DOI: 10.1111/nph.16242	New Phytologist 225/4	2020-03-13
2019	Simon J. Duncan, Keith R. Daly, Daniel M. McKayÂ Fletcher, Siul Ruiz, Paul Sweeney, Tiina Roose Multiple Scale Homogenisation of Nutrient Movement and Crop Growth in Partially Saturated Soil published pages: 3778-3802, ISSN: 0092-8240, DOI: 10.1007/s11538-019-00656-3	Bulletin of Mathematical Biology 81/10	2020-03-13
2018	Nicolai Koebernick, Keith R. Daly, Samuel D. Keyes, Anthony G. Bengough, Lawrie K. Brown, Laura J. Cooper, Timothy S. George, Paul D. Hallett, Muhammad Naveed, Annette Raffan, Tiina Roose Imaging microstructure of the barley rhizosphere: particle packing and root hair influences published pages: 1878-1889, ISSN: 0028-646X, DOI: 10.1111/nph.15516	New Phytologist 221/4	2020-03-13
2020	S. Ruiz, N. Koebernick, S. Duncan, D. McKay Fletcher, C. Scotson, A. Boghi, M. Marin, A. G. Bengough, T. S. George, L. K. Brown, P. D. Hallett, T. Roose Significance of root hairs at the field scale â€“ modelling root water and phosphorus uptake under different field conditions published pages: 281-304, ISSN: 0032-079X, DOI: 10.1007/s11104-019-04308-2	Plant and Soil 447/1-2	2020-03-13
2019	Guy J.D. Kirk, Andrea Boghi, Marieâ€Cecile Affholder, Samuel D. Keyes, James Heppell, Tiina Roose Soil carbon dioxide venting through rice roots published pages: 3197-3207, ISSN: 0140-7791, DOI: 10.1111/pce.13638	Plant, Cell & Environment 42/12	2020-03-13
2016	H. Vereecken, A. Schnepf, J.W. Hopmans, M. Javaux, D. Or, T. Roose, J. Vanderborght, M.H. Young, W. Amelung, M. Aitkenhead, S.D. Allison, S. Assouline, P. Baveye, M. Berli, N. BrÃ¼ggemann, P. Finke, M. Flury, T. Gaiser, G. Govers, T. Ghezzehei, P. Hallett, H.J. Hendricks Franssen, J. Heppell, R. Horn, J.A. Huisman, D. Jacques, F. Jonard, S. Kollet, F. Lafolie, K. Lamorski, D. Leitner, A. McBratney, B. Minasny, C. Montzka, W. Nowak, Y. Pachepsky, J. Padarian, N. Romano, K. Roth, Y. Rothfuss, E.C. Rowe, A. Schwen, J. Å imÅ¯nek, A. Tiktak, J. Van Dam, S.E.A.T.M. van der Zee, H.J. Vogel, J.A. Vrugt, T. WÃ¶hling, I.M. Young Modeling Soil Processes: Review, Key Challenges, and New Perspectives published pages: , ISSN: 1539-1663, DOI: 10.2136/vzj2015.09.0131	Vadose Zone Journal 15/5	2019-05-30
2017	L. J. Cooper, K. R. Daly, P. D. Hallett, M. Naveed, N. Koebernick, A. G. Bengough, T. S. George, T. Roose Fluid flow in porous media using image-based modelling to parametrize Richards\' equation published pages: 20170178, ISSN: 1364-5021, DOI: 10.1098/rspa.2017.0178	Proceedings of the Royal Society A: Mathematical, Physical and Engineering Science 473/2207	2019-05-30
2016	T. Roose, S. D. Keyes, K. R. Daly, A. Carminati, W. Otten, D. Vetterlein, S. Peth Challenges in imaging and predictive modeling of rhizosphere processes published pages: Processing charg, ISSN: 0032-079X, DOI: 10.1007/s11104-016-2872-7	Plant and Soil	2019-05-30
2017	S. D. Keyes, L. Cooper, S. Duncan, N. Koebernick, D. M. McKay Fletcher, C. P. Scotson, A. van Veelen, I. Sinclair, T. Roose Measurement of micro-scale soil deformation around roots using four-dimensional synchrotron tomography and image correlation published pages: 20170560, ISSN: 1742-5689, DOI: 10.1098/rsif.2017.0560	Journal of The Royal Society Interface 14/136	2019-05-30
2018	M. Naveed, L.K. Brown, A.C. Raffan, T.S. George, A.G. Bengough, T. Roose, I. Sinclair, N. Koebernick, L. Cooper, P.D. Hallett Rhizosphere-Scale Quantification of Hydraulic and Mechanical Properties of Soil Impacted by Root and Seed Exudates published pages: , ISSN: 1539-1663, DOI: 10.2136/vzj2017.04.0083	Vadose Zone Journal 17/1	2019-05-30
2016	Keith R. Daly, Samuel D. Keyes, Shakil Masum, Tiina Roose Image-based modelling of nutrient movement in and around the rhizosphere published pages: 1059-1070, ISSN: 0022-0957, DOI: 10.1093/jxb/erv544	Journal of Experimental Botany 67/4	2019-05-30
2018	Andrea Boghi, Tiina Roose, Guy J. D. Kirk A Model of Uranium Uptake by Plant Roots Allowing for Root-Induced Changes in the soil published pages: 3536-3545, ISSN: 0013-936X, DOI: 10.1021/acs.est.7b06136	Environmental Science & Technology 52/6	2019-05-30
2018	K. R. Daly, T. Roose Determination of macro-scale soil properties from pore-scale structures: model derivation published pages: 20170141, ISSN: 1364-5021, DOI: 10.1098/rspa.2017.0141	Proceedings of the Royal Society A: Mathematical, Physical and Engineering Science 474/2209	2019-05-30
2017	M. Naveed, L. K. Brown, A. C. Raffan, T. S. George, A. G. Bengough, T. Roose, I. Sinclair, N. Koebernick, L. Cooper, C. A. Hackett, P. D. Hallett Plant exudates may stabilize or weaken soil depending on species, origin and time published pages: 806-816, ISSN: 1351-0754, DOI: 10.1111/ejss.12487	European Journal of Soil Science 68/6	2019-05-30
2017	K.R. Daly, L.J. Cooper, N. Koebernick, J. Evaristo, S.D. Keyes, A. van Veelen, T. Roose Modelling water dynamics in the rhizosphere published pages: 139-151, ISSN: 2452-2198, DOI: 10.1016/j.rhisph.2017.10.004	Rhizosphere 4	2019-05-30
2016	S.D. Keyes, F. Gillard, N. Soper, M.N. Mavrogordato, I Sinclair, T. Roose Mapping soil deformation around plant roots using in vivo 4D X-ray computed tomography and digital volume correlation published pages: , ISSN: 0021-9290, DOI: 10.1016/j.jbiomech.2016.04.023	Journal of Biomechanics	2019-05-30
2018	Arjen van Veelen, Monique C. Tourell, Nicolai Koebernick, Giuseppe Pileio, Tiina Roose Correlative Visualization of Root Mucilage Degradation Using X-ray CT and MRI published pages: , ISSN: 2296-665X, DOI: 10.3389/fenvs.2018.00032	Frontiers in Environmental Science 6	2019-05-30
2018	S. J. Duncan, K. R. Daly, P. Sweeney, T. Roose Mathematical modelling of water and solute movement in ridged versus flat planting systems published pages: , ISSN: 1351-0754, DOI: 10.1111/ejss.12711	European Journal of Soil Science	2019-05-30
2017	Keith R. Daly, Saoirse R. Tracy, Neil M.J. Crout, Stefan Mairhofer, Tony P. Pridmore, Sacha J. Mooney, Tiina Roose Quantification of root water uptake in soil using X-ray computed tomography and image-based modelling published pages: , ISSN: 0140-7791, DOI: 10.1111/pce.12983	Plant, Cell & Environment	2019-05-30
2018	K. R. Daly, S. D. Keyes, T. Roose Determination of macro-scale soil properties from pore scale structures: image-based modelling of poroelastic structures published pages: 20170745, ISSN: 1364-5021, DOI: 10.1098/rspa.2017.0745	Proceedings of the Royal Society A: Mathematical, Physical and Engineering Science 474/2215	2019-05-30
2018	S. J. Duncan, K. R. Daly, P. Sweeney, T. Roose Mathematical modelling of water and solute movement in ridge plant systems with dynamic ponding published pages: 265-278, ISSN: 1351-0754, DOI: 10.1111/ejss.12503	European Journal of Soil Science 69/2	2019-05-30
2017	Samuel D. Keyes, Neil J. Gostling, Jessica H. Cheung, Tiina Roose, Ian Sinclair, Alan Marchant The Application of Contrast Media for In Vivo Feature Enhancement in X-Ray Computed Tomography of Soil-Grown Plant Roots published pages: 538-552, ISSN: 1431-9276, DOI: 10.1017/S1431927617000319	Microscopy and Microanalysis 23/03	2019-05-30
2017	Samuel David Keyes, Konstantinos C. Zygalakis, Tiina Roose An Explicit Structural Model of Root Hair and Soil Interactions Parameterised by Synchrotron X-ray Computed Tomography published pages: 2785-2813, ISSN: 0092-8240, DOI: 10.1007/s11538-017-0350-x	Bulletin of Mathematical Biology 79/12	2019-05-30
2018	L. J. Cooper, K. R. Daly, P. D. Hallett, N. Koebernick, T. S. George, T. Roose The effect of root exudates on rhizosphere water dynamics published pages: 20180149, ISSN: 1364-5021, DOI: 10.1098/rspa.2018.0149	Proceedings of the Royal Society A: Mathematical, Physical and Engineering Science 474/2217	2019-05-30
2018	Andreas Pohlmeier, Sarah GarrÃ©, Tiina Roose Noninvasive Imaging of Processes in Natural Porous Media: From Pore to Field Scale published pages: , ISSN: 1539-1663, DOI: 10.2136/vzj2018.03.0044	Vadose Zone Journal 17/1	2019-05-30
2017	Nicolai Koebernick, Keith R. Daly, Samuel D. Keyes, Timothy S. George, Lawrie K. Brown, Annette Raffan, Laura J. Cooper, Muhammad Naveed, Anthony G. Bengough, Ian Sinclair, Paul D. Hallett, Tiina Roose High-resolution synchrotron imaging shows that root hairs influence rhizosphere soil structure formation published pages: 124-135, ISSN: 0028-646X, DOI: 10.1111/nph.14705	New Phytologist 216/1	2019-05-30

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