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BE-OPTICAL SIGNED

Advanced BiomEdical OPTICAL Imaging and Data Analysis

Total Cost €

EC-Contrib. €

Partnership

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Outcomes and
results

BE-OPTICAL project word cloud

Explore the words cloud of the BE-OPTICAL project. It provides you a very rough idea of what is the project "BE-OPTICAL" about.

expertise ophthalmic signal ground super economic fluorescence health academic breaking comprising producing image nanomaterials data diagnosis quality engineered countries team cellular doctors tools cardiac market components people training huge tomography software wps wp2 biomedical ophthalmology coherence technologies broad complementary imaging interdisciplinary optogenetics physicists groups tissue microscopy clinical transfer engineers structured company medical job clinic 14 discoveries wp1 commercialization diseases wp3 spectroscopy meet private optical nanotechnology position internationally recognised resolution scientific instrumentation computer wp4 invest esrs brings science life ocular gain citizens

Project "BE-OPTICAL" data sheet

The following table provides information about the project.

Coordinator	UNIVERSITAT POLITECNICA DE CATALUNYA Organization address address: CALLE JORDI GIRONA 31 city: BARCELONA postcode: 8034 website: www.upc.edu contact info title: n.a. name: n.a. surname: n.a. function: n.a. email: n.a. telephone: n.a. fax: n.a.
Coordinator Country	Spain [ES]
Project website	http://beoptical.eu
Total cost	3˙495˙300 €
EC max contribution	3˙495˙300 € (100%)
Programme	1. H2020-EU.1.3.1. (Fostering new skills by means of excellent initial training of researchers)
Code Call	H2020-MSCA-ITN-2015
Funding Scheme	MSCA-ITN-ETN
Starting year	2015
Duration (year-month-day)	from 2015-10-01 to 2019-09-30

Partnership

Take a look of project's partnership.

#	participants	country	role	EC contrib. [€]
1	UNIVERSITAT POLITECNICA DE CATALUNYA UNIVERSITAT POLITECNICA DE CATALUNYA Organization address address: CALLE JORDI GIRONA 31 city: BARCELONA postcode: 8034 website: www.upc.edu contact info title: n.a. name: n.a. surname: n.a. function: n.a. email: n.a. telephone: n.a. fax: n.a.	ES (BARCELONA)	coordinator	743˙618.00
2	GEORG-AUGUST-UNIVERSITAT GOTTINGENSTIFTUNG OFFENTLICHEN RECHTS GEORG-AUGUST-UNIVERSITAT GOTTINGENSTIFTUNG OFFENTLICHEN RECHTS Organization address address: WILHELMSPLATZ 1 city: GOTTINGEN postcode: 37073 website: http://www.uni-goettingen.de contact info title: n.a. name: n.a. surname: n.a. function: n.a. email: n.a. telephone: n.a. fax: n.a.	DE (GOTTINGEN)	participant	498˙432.00
3	MAX-PLANCK-GESELLSCHAFT ZUR FORDERUNG DER WISSENSCHAFTEN EV MAX-PLANCK-GESELLSCHAFT ZUR FORDERUNG DER WISSENSCHAFTEN EV Organization address address: HOFGARTENSTRASSE 8 city: MUENCHEN postcode: 80539 website: n.a. contact info title: n.a. name: n.a. surname: n.a. function: n.a. email: n.a. telephone: n.a. fax: n.a.	DE (MUENCHEN)	participant	498˙432.00
4	UNIWERSYTET MIKOLAJA KOPERNIKA W TORUNIU UNIWERSYTET MIKOLAJA KOPERNIKA W TORUNIU Organization address address: UL. JURIJA GAGARINA 11 city: TORUN postcode: 87100 website: http://www.umk.pl contact info title: n.a. name: n.a. surname: n.a. function: n.a. email: n.a. telephone: n.a. fax: n.a.	PL (TORUN)	participant	448˙274.00
5	THE UNIVERSITY COURT OF THE UNIVERSITY OF ST ANDREWS THE UNIVERSITY COURT OF THE UNIVERSITY OF ST ANDREWS Organization address address: NORTH STREET 66 COLLEGE GATE city: ST ANDREWS postcode: KY16 9AJ website: www.st-andrews.ac.uk contact info title: n.a. name: n.a. surname: n.a. function: n.a. email: n.a. telephone: n.a. fax: n.a.	UK (ST ANDREWS)	participant	273˙287.00
6	UNIVERSITY OF GLASGOW UNIVERSITY OF GLASGOW Organization address address: UNIVERSITY AVENUE city: GLASGOW postcode: G12 8QQ website: www.gla.ac.uk contact info title: n.a. name: n.a. surname: n.a. function: n.a. email: n.a. telephone: n.a. fax: n.a.	UK (GLASGOW)	participant	273˙287.00
7	CENTRE NATIONAL DE LA RECHERCHE SCIENTIFIQUE CNRS CENTRE NATIONAL DE LA RECHERCHE SCIENTIFIQUE CNRS Organization address address: RUE MICHEL ANGE 3 city: PARIS postcode: 75794 website: www.cnrs.fr contact info title: n.a. name: n.a. surname: n.a. function: n.a. email: n.a. telephone: n.a. fax: n.a.	FR (PARIS)	participant	262˙875.00
8	PICOQUANT INNOVATIONS GMBH PICOQUANT INNOVATIONS GMBH Organization address address: RUDOWER CHAUSSEE 29 city: BERLIN postcode: 12489 website: n.a. contact info title: n.a. name: n.a. surname: n.a. function: n.a. email: n.a. telephone: n.a. fax: n.a.	DE (BERLIN)	participant	249˙216.00
9	INSTITUTO DE MICROCIRUGIA OCULAR DOS SLP INSTITUTO DE MICROCIRUGIA OCULAR DOS SLP Organization address address: JOSEP MARIA LLADO 3 city: BARCELONA postcode: 8035 website: n.a. contact info title: n.a. name: n.a. surname: n.a. function: n.a. email: n.a. telephone: n.a. fax: n.a.	ES (BARCELONA)	participant	247˙872.00

Map

Project objective

Biomedical imaging is a research field that is producing ground breaking scientific discoveries that enhance the health and life quality of European citizens and have a huge economic impact. In order to maintain Europe’s leading position in the field, it is crucial to invest in the people who will lead R&D, and to promote the academic-private sector partnerships that will transfer the novel technologies to the market. In order to meet these needs, BE-OPTICAL will provide a unique and structured training programme to 14 ESRs in a wide range of optical imaging technologies and signal processing tools, including fluorescence spectroscopy and microscopy, optical coherence tomography, optogenetics, engineered nanomaterials and signal processing tools. The research is structured in 4 WPs: super-resolution optical imaging for the analysis of cellular processes (WP1), high-resolution optical imaging of cardiac tissue (WP2), advanced instrumentation for ophthalmic imaging (WP3), and optical components, methods and software for image analysis (WP4). Comprising 7 leading academic groups and 2 non-academic partners in 5 European countries, BE-OPTICAL brings together an interdisciplinary team of physicists, engineers and medical doctors, with complementary expertise in optical imaging, nanotechnology, computer science, complex systems and data analysis. The non-academic partners are a leading company in fluorescence instrumentation and an internationally recognised ophthalmology clinic, with the most advanced technology and expertise in ocular diseases. The training programme will provide the ESRs with a broad understanding of how a wide range of optical imaging technologies and data processing tools work, and will open for them a wide range of job opportunities. The ESRs will apply this knowledge to advance the early diagnosis of highly significant diseases. The ESRs will also gain insight into clinical studies of novel imaging technologies and the commercialization process.

Deliverables

List of deliverables.
Prototype of the fibre-optic FRET imaging system	Demonstrators, pilots, prototypes	2020-03-06 16:55:37
Software library for camera control, calibration, 4D reconstruction, motion analysis and artefact removal	Other	2020-03-06 16:55:35
Report on the performance of the Airy beam Light-Sheet Microscopy for imaging biological specimens	Documents, reports	2020-03-06 16:14:19
Report on the performance of instrument for the complete evaluation of vision, control software and user interface	Documents, reports	2020-03-06 16:14:03
Report on the NS substrate validation with GFP-marked living cells	Documents, reports	2020-03-06 16:13:55
Prototype of the endoscopic FRET imaging system	Demonstrators, pilots, prototypes	2020-03-06 16:13:52
Final conference	Other	2020-03-06 16:13:40
Patent application	Websites, patent fillings, videos etc.	2020-03-06 16:13:53
Prototype of the imaging system (optics and electronics)	Demonstrators, pilots, prototypes	2020-03-06 16:14:29
Report on sample preparation, experimental conditions and data analysis for time-resolved multiplexing in cell microscopy	Documents, reports	2020-03-06 16:14:20
Report describing the FPGA-based SOFI	Documents, reports	2020-03-06 16:14:02
Report on the performance of the HDA prototype that incorporates the identified incoherent diode-based light source	Documents, reports	2020-03-06 16:09:06
BE-OPTICAL dissemination videos + brochure	Websites, patent fillings, videos etc.	2020-03-06 16:08:03
Report on the performance of the combined SOFI-LSM techniques for imaging life organisms such as nematodes	Documents, reports	2020-03-06 16:14:06
Report on the performance of the hyperspectral imaging instrument for the dynamic recording of the ocular fundus	Documents, reports	2020-03-06 16:14:02
Report on enhanced light collection of multiphoton confocal function	Documents, reports	2020-03-06 16:55:35
Workshop 4	Other	2020-03-06 16:08:18
Report on novel deconvolution techniques which rectify SOFI brightness skewing by delivering images of linear intensity scaling	Documents, reports	2020-03-06 16:08:02
Final report	Documents, reports	2020-03-06 16:14:06
Report on clinical studies of eyes with ocular diseases	Documents, reports	2020-03-06 16:14:04
Prototype and report of a SS-OCT instrument for heart imaging	Demonstrators, pilots, prototypes	2020-03-06 16:08:13
Prototype and report of an OCT system that can be integrated in the instrument for the evaluation of vision in a fully autonomous and automatic way within a clinical environment	Demonstrators, pilots, prototypes	2020-03-06 16:14:07
Report on the techniques for classification and analysis of 2D images of cardiac and opthalmic images	Documents, reports	2020-03-06 16:14:04
Report on the incoherent emission characteristics of diode light sources under various optical feedback and injection configurations	Documents, reports	2020-03-06 16:13:50
Report on the performance of the method of reducing refractive index without altering electrical function	Documents, reports	2020-03-06 16:55:35
Demonstration of living cell membrane imaging using NS substrates	Demonstrators, pilots, prototypes	2020-03-06 16:14:03
Workshop 3	Other	2020-03-06 16:09:04
Prototype and report of a SLO-OCT instrument for opthalmic imaging and its performance for in-vivo imaging	Demonstrators, pilots, prototypes	2020-03-06 16:08:18
Prototype of a hyperspectral imaging instrument for the dynamic recording of the ocular fundus	Demonstrators, pilots, prototypes	2020-03-06 16:08:11
Prototype of a fluorescence decay based multiplexing system	Demonstrators, pilots, prototypes	2019-06-06 16:06:16
Mid-Term Review Meeting + Workshop 2	Other	2019-05-09 09:18:26
Demonstration of active spatio-temporal modulation of the phase and amplitude for non-diffractive beam generation	Demonstrators, pilots, prototypes	2019-05-13 12:56:36
Workshop 1 + Hands on Modules 3+4	Other	2019-05-13 12:56:47
Prototype for Airy beam Light-Sheet microscope	Demonstrators, pilots, prototypes	2019-05-13 12:56:47
Prototype of the combined SOFI-Light-Sheet microscope	Demonstrators, pilots, prototypes	2019-05-13 12:56:36
Report describing the SOFI-Light-Sheet microscope	Documents, reports	2019-05-13 12:56:42
School 2 + Hands on modules 1+2	Other	2019-05-13 12:56:48
Report describing the Airy beam Light-Sheet microscope	Documents, reports	2019-05-13 12:56:48
School 1	Other	2019-05-09 09:18:26

Take a look to the deliverables list in detail: detailed list of BE-OPTICAL deliverables.

Publications

List of publications.
year	authors and title	journal	last update
2019	Pablo Amil, Miguel C. Soriano, Cristina Masoller Machine learning algorithms for predicting the amplitude of chaotic laser pulses published pages: 113111, ISSN: 1054-1500, DOI: 10.1063/1.5120755	Chaos: An Interdisciplinary Journal of Nonlinear Science 29/11	2019-11-26
2019	Philip Wijesinghe, AdriÃ Escobet-MontalbÃ¡n, Mingzhou Chen, Peter R. T. Munro, Kishan Dholakia Optimal compressive multiphoton imaging at depth using single-pixel detection published pages: 4981, ISSN: 0146-9592, DOI: 10.1364/ol.44.004981	Optics Letters 44/20	2019-11-26
2019	Ewa Maczynska, Jagoda Rzeszewska-Zamiara, Alfonso Jimenez Villar, Maciej Wojtkowski, Bartlomiej J. Kaluzny, Ireneusz Grulkowski Air-Puff-Induced Dynamics of Ocular Components Measured with Optical Biometry published pages: 1979, ISSN: 1552-5783, DOI: 10.1167/iovs.19-26681	Investigative Opthalmology & Visual Science 60/6	2019-11-11
2019	Alfonso JimÃ©nez-villar, Ewa MÄ…czyÅ„ska, Artur CichaÅ„ski, Maciej Wojtkowski, BartÅ‚omiej J. KaÅ‚uÅ¼ny, Ireneusz Grulkowski High-speed OCT-based ocular biometer combined with an air-puff system for determination of induced retraction-free eye dynamics published pages: 3663, ISSN: 2156-7085, DOI: 10.1364/boe.10.003663	Biomedical Optics Express 10/7	2019-11-11
2019	Donatus Halpaap, Jordi Tiana-Alsina, Meritxell Vilaseca, Cristina Masoller Experimental characterization of the speckle pattern at the output of a multimode optical fiber published pages: 27737, ISSN: 1094-4087, DOI: 10.1364/oe.27.027737	Optics Express 27/20	2019-11-11
2018	Tommaso Alterini; Fernando DÃaz-DoutÃ³n; Meritxell Vilaseca Hyperspectral fundus camera with sensitivity beyond the visible range: a pilot study published pages: 5865, ISSN: , DOI:	Investigative Ophthalmology & Visual Science 59	2019-11-11
2019	Donatus Halpaap, Carlos E. GarcÃa-Guerra, Meritxell Vilaseca, Cristina Masoller Speckle reduction in double-pass retinal images published pages: , ISSN: 2045-2322, DOI: 10.1038/s41598-019-41168-3	Scientific Reports 9/1	2019-11-11
2019	Dawid Borycki, MichaÅ‚ HamkaÅ‚o, Maciej Nowakowski, Maciej Szkulmowski, Maciej Wojtkowski Spatiotemporal optical coherence (STOC) manipulation suppresses coherent cross-talk in full-field swept-source optical coherence tomography published pages: 2032, ISSN: 2156-7085, DOI: 10.1364/boe.10.002032	Biomedical Optics Express 10/4	2019-11-11
2019	Tommaso Alterini; Fernando DÃaz-DoutÃ³n; Francisco J. Burgos-FernÃ¡ndez; Laura GonzÃ¡lez; Carlos Mateo; Meritxell Vilaseca Fast visible and extended near-infrared multispectral fundus camera published pages: 1, ISSN: 1083-3668, DOI: 10.1117/1.jbo.24.9.096007	Journal of Biomedical Optics 24/09	2019-11-11
2018	Ireneusz Grulkowski; Ewa Maczynska; Jagoda Rzeszewska; Alfonso Jimenez-Villar; Maciej Wojtkowski; Bartlomiej Kaluzny Relation between IOP and air-puff-induced dynamics of ocular components in human eyes measured with full-eye-length SS-OCT published pages: 279, ISSN: , DOI:	Investigative Ophthalmology & Visual Science 59	2019-11-11
2019	Pablo Amil, Laura GonzÃ¡lez, Elena Arrondo, Cecilia Salinas, J. L. Guell, Cristina Masoller, Ulrich Parlitz Unsupervised feature extraction of anterior chamber OCT images for ordering and classification published pages: , ISSN: 2045-2322, DOI: 10.1038/s41598-018-38136-8	Scientific Reports 9/1	2019-05-09
2018	RaÃºl A. QuiÃ±onez Uribe, Stefan Luther, Laura Diaz-Maue, Claudia Richter Energy-Reduced Arrhythmia Termination Using Global Photostimulation in Optogenetic Murine Hearts published pages: 1651, ISSN: 1664-042X, DOI: 10.3389/fphys.2018.01651	Frontiers in Physiology 9	2019-05-09
2018	AdriÃ Escobet-MontalbÃ¡n, Roman Spesyvtsev, Mingzhou Chen, Wardiya Afshar Saber, Melissa Andrews, C. Simon Herrington, Michael Mazilu, Kishan Dholakia Wide-field multiphoton imaging through scattering media without correction published pages: eaau1338, ISSN: 2375-2548, DOI: 10.1126/sciadv.aau1338	Science Advances 4/10	2019-05-09
2018	AdriÃ Escobet-MontalbÃ¡n, Federico M. Gasparoli, Jonathan Nylk, Pengfei Liu, Zhengyi Yang, and Kishan Dholakia Three-photon light-sheet fluorescence microscopy published pages: 5484-5487, ISSN: 0146-9592, DOI: 10.17630/ff413c1a-3670-427f-9f3f-670518b172b6	Optics Letters 43/21	2019-05-09

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