Explore the words cloud of the OPATHY project. It provides you a very rough idea of what is the project "OPATHY" about.
The following table provides information about the project.
Coordinator |
FUNDACIO CENTRE DE REGULACIO GENOMICA
Organization address contact info |
Coordinator Country | Spain [ES] |
Project website | http://www.opathy.eu |
Total cost | 3˙319˙305 € |
EC max contribution | 3˙319˙305 € (100%) |
Programme |
1. H2020-EU.1.3.1. (Fostering new skills by means of excellent initial training of researchers) |
Code Call | H2020-MSCA-ITN-2014 |
Funding Scheme | MSCA-ITN-ETN |
Starting year | 2015 |
Duration (year-month-day) | from 2015-09-01 to 2019-08-31 |
Take a look of project's partnership.
# | ||||
---|---|---|---|---|
1 | FUNDACIO CENTRE DE REGULACIO GENOMICA | ES (BARCELONA) | coordinator | 495˙745.00 |
2 | UNIVERSITY COLLEGE DUBLIN, NATIONAL UNIVERSITY OF IRELAND, DUBLIN | IE (DUBLIN) | participant | 531˙349.00 |
3 | KONINKLIJKE NEDERLANDSE AKADEMIE VAN WETENSCHAPPEN - KNAW | NL (AMSTERDAM) | participant | 510˙748.00 |
4 | THE UNIVERSITY COURT OF THE UNIVERSITY OF ABERDEEN | UK (ABERDEEN) | participant | 273˙287.00 |
5 | MEDIZINISCHE UNIVERSITAT INNSBRUCK | AT (INNSBRUCK) | participant | 255˙934.00 |
6 | QVQ HOLDING BV | NL (UTRECHT) | participant | 255˙374.00 |
7 | UNIVERSITEIT GENT | BE (GENT) | participant | 250˙560.00 |
8 | BRUKER DALTONIK GMBH | DE (BREMEN) | participant | 249˙216.00 |
9 | LEIBNIZ-INSTITUT FUR NATURSTOFF-FORSCHUNG UND INFEKTIONSBIOLOGIE EV HANS-KNOLL-ISTITUT | DE (JENA) | participant | 249˙216.00 |
10 | BIOTECH VANA SL | ES (PATERNA (VALENCIA)) | participant | 247˙872.00 |
OPATHY is an innovative translational research training network that will explore the potential of omics technologies, including genomics, transcriptomics and proteomics, to study the interactions of yeasts that cause disease to humans (e.g. Candida and Cryptococcus sp.) with their host, and to develop new diagnostic tools to monitor yeast infections in the clinic. Today, these infections are poorly understood, difficult to diagnose, and are becoming increasingly frequent and serious, affecting over 300 million people worldwide. OPATHY will exploit omics technologies to investigate host-pathogen interactions during yeast infection and colonization with a primary focus on their potential to develop innovative diagnostics tools to improve health care. For this proteomics, transcriptomics and genomics measurements of strains and infections will be integrated with state of the art computational analyses to identify novel biomarkers able to determine the infection stage, the infective pathogen, and the potential resistance traits. This knowledge will drive the development of diagnostic tools based on the detection of specific DNA sequences (by PCR) or antibodies (by Elisa or proteomics). These tools will be validated in a clinical study of key patient cohorts. The participation of two clinical centers and four companies is of paramount importance for the network to provide an integrative and transversal research and training environment. Importantly, the methodologies and approaches of OPATHY can be easily extended to the study and identification of other human, animal and plant microbial pathogens, or the tracing of relevant industrial organisms. Grounded on solid individual research projects, OPATHY will train Early Stage Researchers in several scientific technologies and fields and transferable skills, to boost their careers as innovative and creative researchers.
Dissection of RNAseq samples from Candida-blood infections for diagnostic purposes | Websites, patent fillings, videos etc. | 2020-02-21 17:57:55 |
OPATHY final symposium and publication | Websites, patent fillings, videos etc. | 2020-02-21 17:57:56 |
Validated biomarkers for resistant Candida isolates | Websites, patent fillings, videos etc. | 2020-02-21 17:57:55 |
Proteomics-based diagnostics of resistant isolates | Websites, patent fillings, videos etc. | 2020-02-21 17:57:55 |
Validated PCR assays for Candida pathogens | Websites, patent fillings, videos etc. | 2020-02-21 17:57:55 |
Verification of gene expression data from in vitro, ex vivo and in vivo samples | Websites, patent fillings, videos etc. | 2020-02-21 17:57:55 |
Validated biomarkers candidiasis | Websites, patent fillings, videos etc. | 2020-02-21 17:57:55 |
Analysis of the role of identified factors | Websites, patent fillings, videos etc. | 2020-02-21 17:57:55 |
Validated PCR assays for resistant Candida isolates | Websites, patent fillings, videos etc. | 2020-02-21 17:57:55 |
Enrichment tool based on llama antibodies | Websites, patent fillings, videos etc. | 2020-02-21 17:57:56 |
Comparative transcriptomics of all transcriptional data | Websites, patent fillings, videos etc. | 2020-02-21 17:57:55 |
OPATHY OMICS pipeline | Websites, patent fillings, videos etc. | 2020-02-21 17:57:54 |
Improved proteomics-based diagnostics of pathogenic yeast species complexes | Websites, patent fillings, videos etc. | 2020-02-21 17:57:54 |
Proteomics-based diagnostics of infected clinical materials | Websites, patent fillings, videos etc. | 2020-02-21 17:57:54 |
In vitro, ex vivo Infection models established and characterized for all Candida species | Websites, patent fillings, videos etc. | 2020-02-21 17:57:53 |
In vitro, ex vivo and in vivo transcriptional profiles of all Candida species | Websites, patent fillings, videos etc. | 2020-02-21 17:57:53 |
Full Map Transcriptomic/proteomics pipeline | Websites, patent fillings, videos etc. | 2020-02-21 17:57:53 |
Take a look to the deliverables list in detail: detailed list of OPATHY deliverables.
year | authors and title | journal | last update |
---|---|---|---|
2019 |
Kontxi Martinez de San Vicente, Markus S. Schröder, Lisa Lombardi, Elise Iracane, Geraldine Butler Correlating Genotype and Phenotype in the Asexual Yeast Candida orthopsilosis Implicates ZCF29 in Sensitivity to Caffeine published pages: g3.400348.2019, ISSN: 2160-1836, DOI: 10.1534/g3.119.400348 |
\"G3: Genes|Genomes|Genetics\" | 2020-02-21 |
2019 |
Antonio Pérez-Hansen, Cornelia Lass-Flörl, Michaela Lackner, M Aigner, A Alastruey-Izquierdo, S Arikan-Akdagli, O Bader, K Becker, T Boekhout, W Buzina, O A Cornely, P Hamal, S E Kidd, O Kurzai, K Lagrou, A Lopes Colombo, M Mares, H Masoud, J F Meis, S Oliveri, A C Rodloff, D Orth-Höller, I Guerrero-Lozano, M Sanguinetti, E Segal, S J Taj-Aldeen, A M Tortorano, L Trovato, G Walther, B Willinger Antifungal susceptibility profiles of rare ascomycetous yeasts published pages: , ISSN: 0305-7453, DOI: 10.1093/jac/dkz231 |
Journal of Antimicrobial Chemotherapy | 2020-02-21 |
2019 |
Amir Arastehfar, Mina Bakhtiari, Farnaz Daneshnia, Wenjie Fang, Sara Khanjari Sadati, Abdullah MS Al-Hatmi, Marizeth Groenewald, Hamid Sharifi-Mehr, Wanqing Liao, Weihua Pan, Kamiar Zomorodian, Ferry Hagen, Teun Boekhout First fungemia case due to environmental yeast Wickerhamomyces myanmarensis : detection by multiplex qPCR and antifungal susceptibility published pages: 267-274, ISSN: 1746-0913, DOI: 10.2217/fmb-2018-0253 |
Future Microbiology 14/4 | 2020-02-21 |
2019 |
Amir Arastehfar, Farnaz Daneshnia, Shirin Farahyar, Wenjie Fang, Maryam Salimi, Mohammadreza Salehi, Ferry Hagen, Pan Weihua, Maryam Roudbary, Teun Boekhout Incidence and spectrum of yeast species isolated from the oral cavity of Iranian patients suffering from hematological malignancies published pages: 1601061, ISSN: 2000-2297, DOI: 10.1080/20002297.2019.1601061 |
Journal of Oral Microbiology 11/1 | 2020-02-21 |
2019 |
Amir Arastehfar, Sadegh Khodavaisy, Farnaz Daneshnia, Mohammad-Javad Najafzadeh, Shahram Mahmoudi, Arezoo Charsizadeh, Mohammad-Reza Salehi, Hossein Zarrinfar, Abbas Raeisabadi, Somayeh Dolatabadi, Zahra Zare Shahrabadi, Kamiar Zomorodian, Weihua Pan, Ferry Hagen, Teun Boekhout Molecular Identification, Genotypic Diversity, Antifungal Susceptibility, and Clinical Outcomes of Infections Caused by Clinically Underrated Yeasts, Candida orthopsilosis, and Candida metapsilosis: An Iranian Multicenter Study (2014–2019) published pages: , ISSN: 2235-2988, DOI: 10.3389/fcimb.2019.00264 |
Frontiers in Cellular and Infection Microbiology 9 | 2020-02-21 |
2019 |
Mansoureh Vatanshenassan, Amir Arastehfar, Teun Boekhout, Judith Berman, Cornelia Lass-Flörl, Katrin Sparbier, Markus Kostrzewa Anidulafungin Susceptibility Testing of Candida glabrata Isolates from Blood Cultures by the MALDI Biotyper Antibiotic (Antifungal) Susceptibility Test Rapid Assay published pages: , ISSN: 0066-4804, DOI: 10.1128/aac.00554-19 |
Antimicrobial Agents and Chemotherapy 63/9 | 2020-02-21 |
2019 |
Amir Arastehfar, Farnaz Daneshnia, Mohammad-Reza Salehi, Hossein Zarrinfar, Sadegh Khodavaisy, Pieter-Jan Haas, Maryam Roudbary, Mohammad-Javad Najafzadeh, Kamiar Zomorodian, Arezoo Charsizadeh, Carlo Brouwer, Weihua Pan, Ferry Hagen, Teun Boekhout Molecular characterization and antifungal susceptibility testing of Candida nivariensis from blood samples – an Iranian multicentre study and a review of the literature published pages: 770-777, ISSN: 0022-2615, DOI: 10.1099/jmm.0.000963 |
Journal of Medical Microbiology 68/5 | 2020-02-21 |
2019 |
H Hovhannisyan, A Hafez, C Llorens, T Gabaldón CROSSMAPPER: estimating cross-mapping rates and optimizing experimental design in multi-species sequencing studies published pages: , ISSN: 1367-4803, DOI: 10.1093/bioinformatics/btz626 |
Bioinformatics | 2020-02-21 |
2019 |
A Arastehfar, T Boekhout, G Butler, G Buda De Cesare, E Dolk, T Gabaldóln, A Hafez, B Hube, F Hagen, H Hovhannisyan, E Iracane, M Kostrzewa, M Lackner, C Lass-Flörl, C Llorens, V Mixão, C Munro, J Oliveira-Pacheco, M Pekmezovic, A Pérez-Hansen, A Rodriguez Sanchez, F M Sauer, K Sparbier, A A Stavrou, M Vaneechoutte, M Vatanshenassan, Toni Gabaldón Recent trends in molecular diagnostics of yeast infections: from PCR to NGS published pages: , ISSN: 0168-6445, DOI: 10.1093/femsre/fuz015 |
FEMS Microbiology Reviews | 2020-02-21 |
2019 |
Aimilia A Stavrou, Michaela Lackner, Cornelia Lass-Flörl, Teun Boekhout The changing spectrum of Saccharomycotina yeasts causing candidemia: phylogeny mirrors antifungal susceptibility patterns for azole drugs and amphothericin B published pages: , ISSN: 1567-1356, DOI: 10.1093/femsyr/foz037 |
FEMS Yeast Research | 2020-02-21 |
2019 |
Verónica Mixão, Antonio Perez Hansen, Ester Saus, Teun Boekhout, Cornelia Lass-Florl, Toni Gabaldón Whole-Genome Sequencing of the Opportunistic Yeast Pathogen Candida inconspicua Uncovers Its Hybrid Origin published pages: , ISSN: 1664-8021, DOI: 10.3389/fgene.2019.00383 |
Frontiers in Genetics 10 | 2020-02-21 |
2019 |
Amir Arastehfar, Farnaz Daneshnia, Kamiar Zomorodian, Mohammad-Javad Najafzadeh, Sadegh Khodavaisy, Hossein Zarrinfar, Ferry Hagen, Zahra Zare Shahrabadi, Michaela Lackner, Hossein Mirhendi, Mohammadreza Salehi, Maryam Roudbary, Weihua Pan, Markus Kostrzewa, Teun Boekhout Low level of antifungal resistance in Iranian isolates of Candida glabrata recovered from blood samples from multicenter (2015-2018): Potential prognostic values of genotyping and sequencing of PDR1 published pages: , ISSN: 0066-4804, DOI: 10.1128/aac.02503-18 |
Antimicrobial Agents and Chemotherapy | 2020-02-21 |
2019 |
Amir Arastehfar, Wenjie Fang, Farnaz Daneshnia, Abdullah MS Al-Hatmi, Wanqing Liao, Weihua Pan, Ziauddin Khan, Suhail Ahmad, Katharina Rosam, Michaela Lackner, Cornelia Lass-Flörl, Ferry Hagen, Teun Boekhout Novel multiplex real-time quantitative PCR detecting system approach for direct detection of Candida auris and its relatives in spiked serum samples published pages: 33-45, ISSN: 1746-0913, DOI: 10.2217/fmb-2018-0227 |
Future Microbiology 14/1 | 2020-02-21 |
2019 |
Antonio RodrÃguez, Mario Vaneechoutte Comparison of the efficiency of different cell lysis methods and different commercial methods for RNA extraction from Candida albicans stored in RNAlater published pages: , ISSN: 1471-2180, DOI: 10.1186/s12866-019-1473-z |
BMC Microbiology 19/1 | 2020-02-21 |
2019 |
Amir Arastehfar, Farnaz Daneshnia, Mohammad Kord, Maryam Roudbary, Hossein Zarrinfar, Wenjie Fang, Sayed Jamal Hashemi, Mohammad Javad Najafzadeh, Sadegh Khodavaisy, Weihua Pan, Wanqing Liao, Hamid Badali, Sassan Rezaie, Kamiar Zomorodian, Ferry Hagen, Teun Boekhout Comparison of 21-Plex PCR and API 20C AUX, MALDI-TOF MS, and rDNA Sequencing for a Wide Range of Clinically Isolated Yeast Species: Improved Identification by Combining 21-Plex PCR and API 20C AUX as an Alternative Strategy for Developing Countries published pages: , ISSN: 2235-2988, DOI: 10.3389/fcimb.2019.00021 |
Frontiers in Cellular and Infection Microbiology 9 | 2020-02-21 |
2018 |
Elise Iracane, Paul D. Donovan, Mihaela Ola, Geraldine Butler, Linda M. Holland Identification of an Exceptionally Long Intron in the HAC1 Gene of Candida parapsilosis published pages: , ISSN: 2379-5042, DOI: 10.1128/msphere.00532-18 |
mSphere 3/6 | 2020-02-21 |
2019 |
Amir Arastehfar, Wenjie Fang, Weihua Pan, Michaela Lackner, Wanqing Liao, Parisa Badiee, Kamiar Zomorodian, Hamid Badali, Ferry Hagen, Cornelia Lass-Flörl, Teun Boekhout YEAST PANEL multiplex PCR for identification of clinically important yeast species: stepwise diagnostic strategy, useful for developing countries published pages: 112-119, ISSN: 0732-8893, DOI: 10.1016/j.diagmicrobio.2018.09.007 |
Diagnostic Microbiology and Infectious Disease 93/2 | 2020-02-21 |
2018 |
Afsane Vaezi, Hamed Fakhim, Amir Arastehfar, Tahereh Shokohi, Mohammad T. Hedayati, Sadegh Khodavaisy, Ali Rezaei-Matehkolaei, Parisa Badiee, Ferry Hagen, Cornelia Lass-Flörl, Eric Dannaoui, Jacques F. Meis, Hamid Badali In vitro antifungal activity of amphotericin B and 11 comparators against Aspergillus terreus species complex published pages: 134-142, ISSN: 0933-7407, DOI: 10.1111/myc.12716 |
Mycoses 61/2 | 2020-02-21 |
2018 |
Aimilia A. Stavrou, Verónica Mixão, Teun Boekhout, Toni Gabaldón Misidentification of genome assemblies in public databases: The case of Naumovozyma dairenensis and proposal of a protocol to correct misidentifications published pages: 425-429, ISSN: 0749-503X, DOI: 10.1002/yea.3303 |
Yeast 35/6 | 2020-02-21 |
2018 |
Amir Arastehfar, Wenjie Fang, Weihua Pan, Wanqing Liao, Liang Yan, Teun Boekhout Identification of nine cryptic species of Candida albicans, C. glabrata, and C. parapsilosis complexes using one-step multiplex PCR published pages: , ISSN: 1471-2334, DOI: 10.1186/s12879-018-3381-5 |
BMC Infectious Diseases 18/1 | 2020-02-21 |
2018 |
Jelena Lazić, Vladimir AjdaÄić, Sandra Vojnovic, Mario Zlatović, Marina Pekmezovic, Selene Mogavero, Igor Opsenica, Jasmina Nikodinovic-Runic Bis-guanylhydrazones as efficient anti-Candida compounds through DNA interaction published pages: 1889-1901, ISSN: 0175-7598, DOI: 10.1007/s00253-018-8749-3 |
Applied Microbiology and Biotechnology 102/4 | 2020-02-21 |
2019 |
Lisa Lombardi, João Oliveira-Pacheco, Geraldine Butler Plasmid-Based CRISPR-Cas9 Gene Editing in Multiple Candida Species published pages: , ISSN: 2379-5042, DOI: 10.1128/msphere.00125-19 |
mSphere 4/2 | 2020-02-21 |
2018 |
Amir Arastehfar, Wenjie Fang, Hamid Badali, Afsane Vaezi, Weiwei Jiang, Wanqing Liao, Weihua Pan, Ferry Hagen, Teun Boekhout Low-Cost Tetraplex PCR for the Global Spreading Multi-Drug Resistant Fungus, Candida auris and Its Phylogenetic Relatives published pages: , ISSN: 1664-302X, DOI: 10.3389/fmicb.2018.01119 |
Frontiers in Microbiology 9 | 2020-02-21 |
2016 |
Ãgnes Jakab, Selene Mogavero, Toni M. Förster​, Marina Pekmezovic​, Nadja Jablonowski​, Viktor Dombrádi​, István Pócsi​, Bernhard Hube Effects of the glucocorticoid betamethasone on the interaction of Candida albicans with human epithelial cells published pages: 2116-2125, ISSN: 1350-0872, DOI: 10.1099/mic.0.000383 |
Microbiology 162/12 | 2020-02-21 |
2018 |
Hrant Hovhannisyan, Toni Gabaldón Transcriptome Sequencing Approaches to Elucidate Host–Microbe Interactions in Opportunistic Human Fungal Pathogens published pages: , ISSN: , DOI: 10.1007/82_2018_122 |
Current Topics in Microbiology and Immunology | 2020-02-21 |
2018 |
Ester Saus, Jesse R. Willis, Leszek P. Pryszcz, Ahmed Hafez, Carlos Llorens, Heinz Himmelbauer, Toni Gabaldón nextPARS: parallel probing of RNA structures in Illumina published pages: 609-619, ISSN: 1355-8382, DOI: 10.1261/rna.063073.117 |
RNA 24/4 | 2020-02-21 |
2017 |
Verónica Mixão, Toni Gabaldón Hybridization and emergence of virulence in opportunistic human yeast pathogens published pages: , ISSN: 0749-503X, DOI: 10.1002/yea.3242 |
Yeast | 2020-02-21 |
2018 |
Mansoureh Vatanshenassan, Teun Boekhout, Cornelia Lass-Flörl, Michaela Lackner, Sören Schubert, Markus Kostrzewa, Katrin Sparbier Proof of Concept for MBT ASTRA, a Rapid Matrix-Assisted Laser Desorption Ionization–Time of Flight Mass Spectrometry (MALDI-TOF MS)-Based Method To Detect Caspofungin Resistance in Candida albicans and Candida glabrata published pages: , ISSN: 0095-1137, DOI: 10.1128/JCM.00420-18 |
Journal of Clinical Microbiology 56/9 | 2020-02-21 |
2018 |
Nada D. Savić, Sandra Vojnovic, Biljana Ä. GliÅ¡ić, Aurélien Crochet, Aleksandar Pavic, Goran V. Janjić, Marina Pekmezović, Igor M. Opsenica, Katharina M. Fromm, Jasmina Nikodinovic-Runic, MiloÅ¡ I. Djuran Mononuclear silver(I) complexes with 1,7-phenanthroline as potent inhibitors of Candida growth published pages: 760-773, ISSN: 0223-5234, DOI: 10.1016/j.ejmech.2018.07.049 |
European Journal of Medicinal Chemistry 156 | 2020-02-21 |
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