Explore the words cloud of the PrECISE project. It provides you a very rough idea of what is the project "PrECISE" about.
The following table provides information about the project.
Coordinator |
TECHNIKON FORSCHUNGS- UND PLANUNGSGESELLSCHAFT MBH
Organization address contact info |
Coordinator Country | Austria [AT] |
Project website | https://precise-project.eu/ |
Total cost | 5˙695˙712 € |
EC max contribution | 3˙090˙312 € (54%) |
Programme |
1. H2020-EU.3.1.1. (Understanding health, wellbeing and disease) |
Code Call | H2020-PHC-2015-two-stage |
Funding Scheme | RIA |
Starting year | 2016 |
Duration (year-month-day) | from 2016-01-01 to 2018-12-31 |
Take a look of project's partnership.
# | ||||
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1 | TECHNIKON FORSCHUNGS- UND PLANUNGSGESELLSCHAFT MBH | AT (VILLACH) | coordinator | 358˙125.00 |
2 | UNIVERSITAETSKLINIKUM AACHEN | DE (AACHEN) | participant | 620˙937.00 |
3 | BAYLOR COLLEGE OF MEDICINE | US (HOUSTON TX) | participant | 561˙250.00 |
4 | TECHNISCHE UNIVERSITAT DARMSTADT | DE (DARMSTADT) | participant | 539˙375.00 |
5 | INSTITUT CURIE | FR (PARIS) | participant | 535˙625.00 |
6 | ASTRIDBIO TECHNOLOGIES KFT | HU (SZEGED) | participant | 475˙000.00 |
7 | EIDGENOESSISCHE TECHNISCHE HOCHSCHULE ZUERICH | CH (ZUERICH) | participant | 0.00 |
8 | IBM RESEARCH GMBH | CH (RUESCHLIKON) | participant | 0.00 |
9 | UNIVERSITAT ZURICH | CH (ZURICH) | participant | 0.00 |
Despite of their great promise, high-throughput technologies in cancer research have often failed to translate to major therapeutic advances in the clinic. One challenge has been tumour heterogeneity, where multiple competing subclones coexist within a single tumour. Genomic heterogeneity renders it difficult to identify all driving molecular alterations, and thus results in therapies that only target subsets of aggressive tumour cells. Another challenge lies in the integration of multiple types of molecular data into mathematical disease models that can make actionable clinical statements.
We aim to develop predictive computational technology that can exploit molecular and clinical data to improve our understanding of disease mechanisms and to inform clinicians about optimized strategies for therapeutic intervention. We propose to focus on prostate cancer, a leading cause of cancer death amongst men in Europe, but also prone to over-treatment. Our approach combines the exploitation of genomic, transcriptomic, proteomic, and clinical data in primary and metastatic tumours, prospective cohorts of well characterized prostate cancer patients, drug screenings in cell lines, and the use of the Watson technology, a last generation cognitive computer developed at IBM.
The translational objective of this study is to develop technology for identifying disease mechanisms and produce treatment recommendations for individual patients based on a therapeutic biomarker panel. The proposed software framework will be accessible through a graphical interface that will facilitate its dissemination and use by researchers, clinicians, and biomedical industries. The framework will provide intuitive tools to deposit, share, analyze, and visualize molecular and clinical data; as well as to infer prognosis, elucidate implicated mechanisms and recommend therapy accordingly. This software framework will serve as a proof of concept for future development by industrial partners in Europe.
Generate SWATH proteome profiles from sample punches prepared in D.6.2 | Documents, reports | 2020-03-25 14:53:42 |
1st Interim Progress Report | Documents, reports | 2020-03-25 14:53:42 |
Network reconstruction algorithms for MS data | Other | 2020-03-25 14:53:43 |
Re-implement methods | Other | 2020-03-25 14:53:42 |
2nd Interim Progress Report | Documents, reports | 2020-03-25 14:53:42 |
Generate amplicon sequencing profiles from sample punches prepared in D.6.2 | Documents, reports | 2020-03-25 14:53:42 |
Proteomic data sets in cancer cell lines | Documents, reports | 2020-03-25 14:53:42 |
Data input and input interface | Other | 2020-03-25 14:53:42 |
Robust cross-cohort clinical patient classifier | Documents, reports | 2020-03-25 14:53:43 |
A complete catalogue of targeted profiles | Documents, reports | 2020-03-25 14:53:42 |
Clonal classification of tumours | Documents, reports | 2020-03-25 14:53:42 |
Targeted profiling of prospective cohort | Documents, reports | 2020-03-25 14:53:42 |
Integrate methods, including ACSN and Watson | Other | 2020-03-25 14:53:42 |
Generate cell line drug sensitivity/resistance validation assays | Documents, reports | 2020-03-25 14:53:42 |
Catalogue of molecular alterations and dysregulated pathways | Documents, reports | 2020-03-25 14:53:42 |
Identification of systematic alterations of networks for different prognosis and for different clonal composition | Other | 2020-03-25 14:53:42 |
Final clone inference | Documents, reports | 2020-03-25 14:53:42 |
Internal and external IT communication infrastructure and project website | Websites, patent fillings, videos etc. | 2020-03-25 14:53:42 |
Project quality plan | Documents, reports | 2020-03-25 14:53:42 |
Interactome of molecular interactions in prostate cancer | Other | 2020-03-25 14:53:42 |
Generic model | Documents, reports | 2020-03-25 14:53:42 |
First data-driven reconstruction of context-specific network | Other | 2020-03-25 14:53:42 |
Computational pipeline to extract prior network information at the proteomic level | Other | 2020-03-25 14:53:42 |
Targeted ultra-deep sequencing of cancer-gene loci | Documents, reports | 2020-03-25 14:53:42 |
Data Management Plan | Documents, reports | 2020-03-25 14:53:42 |
Final regulatory network inference | Documents, reports | 2020-03-25 14:53:42 |
Ultra-deep sequencing of prognostic biomarkers | Documents, reports | 2020-03-25 14:53:42 |
Design and integrate pathway visualization | Other | 2020-03-25 14:53:41 |
Take a look to the deliverables list in detail: detailed list of PrECISE deliverables.
year | authors and title | journal | last update |
---|---|---|---|
2018 |
H. Alexander Ebhardt, Alex Root, Yansheng Liu, Nicholas Paul Gauthier, Chris Sander, Ruedi Aebersold Systems pharmacology using mass spectrometry identifies critical response nodes in prostate cancer published pages: , ISSN: 2056-7189, DOI: 10.1038/s41540-018-0064-1 |
npj Systems Biology and Applications 4/1 | 2020-03-25 |
2019 |
Jonas Béal, Arnau Montagud, Pauline Traynard, Emmanuel Barillot, Laurence Calzone Personalization of Logical Models With Multi-Omics Data Allows Clinical Stratification of Patients published pages: , ISSN: 1664-042X, DOI: 10.3389/fphys.2018.01965 |
Frontiers in Physiology 9 | 2020-03-25 |
2018 |
Yang, Sikun; Koeppl, Heinz Collapsed Variational Inference for Nonparametric Bayesian Group Factor Analysis published pages: , ISSN: , DOI: 10.5281/zenodo.1966176 |
3 | 2020-03-25 |
2018 |
Angeliki Kalamara, Luis Tobalina, Julio Saez-Rodriguez How to find the right drug for each patient? Advances and challenges in pharmacogenomics published pages: 53-62, ISSN: 2452-3100, DOI: 10.1016/j.coisb.2018.07.001 |
Current Opinion in Systems Biology 10 | 2020-03-25 |
2018 |
Arnau Montagud, Jonas Béal, Pauline Traynard, Luis Tobalina, Julio Sáez-RodrÃguez, Emmanuel Barillot and Laurence Calzone Patient-specific prostate logical models allow clinical stratification of patients and personalized drug treatment published pages: , ISSN: , DOI: 10.5281/zenodo.2416618 |
2020-03-25 | |
2018 |
Yang, Sikun; Koeppl, Heinz Dependent Relational Gamma Process Models for Longitudinal Networks published pages: , ISSN: , DOI: 10.5281/zenodo.1314290 |
10 | 2020-03-25 |
2018 |
Calzone, Laurence; Barillot, Emmanuel; Zinovyev, Andrei Logical versus kinetic modeling of biological networks: applications in cancer research published pages: , ISSN: 2211-3398, DOI: 10.5281/zenodo.1243004 |
Current Opinion in Chemical Engineering 21 22-31 1 | 2020-03-25 |
2018 |
Dmytro Ustianenko, Hua-Sheng Chiu, Thomas Treiber, Sebastien M. Weyn-Vanhentenryck, Nora Treiber, Gunter Meister, Pavel Sumazin, Chaolin Zhang LIN28 Selectively Modulates a Subclass of Let-7 MicroRNAs published pages: 271-283.e5, ISSN: 1097-2765, DOI: 10.1016/j.molcel.2018.06.029 |
Molecular Cell 71/2 | 2020-03-25 |
2017 |
Linzner, Dominik; Koepply, Heinz Inferring network statistics from high-dimensional undersampled time-course data published pages: , ISSN: , DOI: 10.5281/zenodo.841159 |
ISMB 2017 / CMSB 2017 | 2020-03-25 |
2017 |
Pauline Traynard, Luis Tobalina, Federica Eduati, Laurence Calzone, Julio Saez-Rodriguez Logic Modeling in Quantitative Systems Pharmacology published pages: 499-511, ISSN: 2163-8306, DOI: 10.1002/psp4.12225 |
CPT: Pharmacometrics & Systems Pharmacology 6/8 | 2020-03-25 |
2018 |
Oskooei, Ali; Born, Jannis; Manica, Matteo; Subramanian, Vigneshwari; Saez-Rodriguez, Julio; Rodriguez- Martinez, Maria PaccMann: Prediction of anticancer compound sensitivity with multi-modal attention-based neural networks published pages: , ISSN: , DOI: 10.5281/zenodo.1967104 |
7 | 2020-03-25 |
2017 |
Mathis, Roland; Manica, Matteo; Rodriguez Martinez, Maria DeepGRN: Deciphering gene deregulation in cancer development using deep learning published pages: , ISSN: , DOI: 10.5281/zenodo.841163 |
2 | 2020-03-25 |
2017 |
Jonas Béal, Arnau Montagud, Pauline Traynard, Emmanuel Barillot and Laurence Calzone Instantiation of Patient-Specific Logical Models With Multi-Omics Data Allows Clinical Stratification of Patients published pages: , ISSN: , DOI: 10.5281/zenodo.2417118 |
2020-03-25 | |
2018 |
Yang, Sikun; Koeppl, Heinz A Poisson Gamma Probabilistic Model for Latent Node-group Memberships in Dynamic Networks published pages: , ISSN: , DOI: 10.5281/zenodo.1242987 |
AAAI 2018 - Association for the Advancement of Artificial Intelligence 2018 3 | 2020-03-25 |
2018 |
Hua-Sheng Chiu, Sonal Somvanshi, Ektaben Patel, Ting-Wen Chen, Vivek P. Singh, Barry Zorman, Sagar L. Patil, Yinghong Pan, Sujash S. Chatterjee, Anil K. Sood, Preethi H. Gunaratne, Pavel Sumazin, Samantha J. Caesar-Johnson, John A. Demchok, Ina Felau, Melpomeni Kasapi, Martin L. Ferguson, Carolyn M. Hutter, Heidi J. Sofia, Roy Tarnuzzer, Zhining Wang, Liming Yang, Jean C. Zenklusen, Jiashan (Julia) Zhang, Sudha Chudamani, Jia Liu, Laxmi Lolla, Rashi Naresh, Todd Pihl, Qiang Sun, Yunhu Wan, Ye Wu, Juok Cho, Timothy DeFreitas, Scott Frazer, Nils Gehlenborg, Gad Getz, David I. Heiman, Jaegil Kim, Michael S. Lawrence, Pei Lin, Sam Meier, Michael S. Noble, Gordon Saksena, Doug Voet, Hailei Zhang, Brady Bernard, Nyasha Chambwe, Varsha Dhankani, Theo Knijnenburg, Roger Kramer, Kalle Leinonen, Yuexin Liu, Michael Miller, Sheila Reynolds, Ilya Shmulevich, Vesteinn Thorsson, Wei Zhang, Rehan Akbani, Bradley M. Broom, Apurva M. Hegde, Zhenlin Ju, Rupa S. Kanchi, Anil Korkut, Jun Li, Han Liang, Shiyun Ling, Wenbin Liu, Yiling Lu, Gordon B. Mills, Kwok-Shing Ng, Arvind Rao, Michael Ryan, Jing Wang, John N. Weinstein, Jiexin Zhang, Adam Abeshouse, Joshua Armenia, Debyani Chakravarty, Walid K. Chatila, Ino de Bruijn, Jianjiong Gao, Benjamin E. Gross, Zachary J. Heins, Ritika Kundra, Konnor La, Marc Ladanyi, Augustin Luna, Moriah G. Nissan, Angelica Ochoa, Sarah M. Phillips, Ed Reznik, Francisco Sanchez-Vega, Chris Sander, Nikolaus Schultz, Robert Sheridan, S. Onur Sumer, Yichao Sun, Barry S. Taylor, Jioajiao Wang, Hongxin Zhang, Pavana Anur, Myron Peto, Paul Spellman, Christopher Benz, Joshua M. Stuart, Christopher K. Wong, Christina Yau, D. Neil Hayes, Joel S. Parker, Matthew D. Wilkerson, Adrian Ally, Miruna Balasundaram, Reanne Bowlby, Denise Brooks, Rebecca Carlsen, Eric Chuah, Noreen Dhalla, Robert Holt, Steven J.M. Jones, Katayoon Kasaian, Darlene Lee, Yussanne Ma, Marco A. Marra, Michael Mayo, Richard A. Moore, Andrew J. Mungall, Karen Mungall, A. Gordon Robertson, Sara Sadeghi, Jacqueline E. Schein, Payal Sipahimalani, Angela Tam, Nina Thiessen, Kane Tse, Tina Wong, Ashton C. Berger, Rameen Beroukhim, Andrew D. Cherniack, Carrie Cibulskis, Stacey B. Gabriel, Galen F. Gao, Gavin Ha, Matthew Meyerson, Steven E. Schumacher, Juliann Shih, Melanie H. Kucherlapati, Raju S. Kucherlapati, Stephen Baylin, Leslie Cope, Ludmila Danilova, Moiz S. Bootwalla, Phillip H. Lai, Dennis T. Maglinte, David J. Van Den Berg, Daniel J. Weisenberger, J. Todd Auman, Saianand Balu, Tom Bodenheimer, Cheng Fan, Katherine A. Hoadley, Alan P. Hoyle, Stuart R. Jefferys, Corbin D. Jones, Shaowu Meng, Piotr A. Mieczkowski, Lisle E. Mose, Amy H. Perou, Charles M. Perou, Jeffrey Roach, Yan Shi, Janae V. Simons, Tara Skelly, Matthew G. Soloway, Donghui Tan, Umadevi Veluvolu, Huihui Fan, Toshinori Hinoue, Peter W. Laird, Hui Shen, Wanding Zhou, Michelle Bellair, Kyle Chang, Kyle Covington, Chad J. Creighton, Huyen Dinh, HarshaVardhan Doddapaneni, Lawrence A. Donehower, Jennifer Drummond, Richard A. Gibbs, Robert Glenn, Walker Hale, Yi Han, Jianhong Hu, Viktoriya Korchina, Sandra Lee, Lora Lewis, Wei Li, Xiuping Liu, Margaret Morgan, Donna Morton, Donna Muzny, Jireh Santibanez, Margi Sheth, Eve Shinbrot, Linghua Wang, Min Wang, David A. Wheeler, Liu Xi, Fengmei Zhao, Julian Hess, Elizabeth L. Appelbaum, Matthew Bailey, Matthew G. Cordes, Li Ding, Catrina C. Fronick, Lucinda A. Fulton, Robert S. Fulton, Cyriac Kandoth, Elaine R. Mardis, Michael D. McLellan, Christopher A. Miller, Heather K. Schmidt, Richard K. Wilson, Daniel Crain, Erin Curley, Johanna Gardner, Kevin Lau, David Mallery, Scott Morris, Joseph Paulauskis, Robert Penny, Candace Shelton, Troy Shelton, Mark Sherman, Eric Thompson, Peggy Yena, Jay Bowen, Julie M. Gastier-Foster, Mark Gerken, Kristen M. Leraas, Tara M. Lichtenberg, Nilsa C. Ramirez, Lisa Wise, Erik Zmuda, Niall Corcoran, Tony Costello, Christopher Hovens, Andre L. Carvalho, Ana C. de Carvalho, José H. Fregnani, Adhemar Longatto-Filho, Rui M. Rei Pan-Cancer Analysis of lncRNA Regulation Supports Their Targeting of Cancer Genes in Each Tumor Context published pages: 297-312.e12, ISSN: 2211-1247, DOI: 10.1016/j.celrep.2018.03.064 |
Cell Reports 23/1 | 2020-03-25 |
2018 |
Traynard, Pauline; Tobalina, Luis; Eduati, Federica; Calzone, Laurence; Saez-Rodriguez, Julio Logic modeling in quantitative systems pharmacology (Poster) published pages: , ISSN: , DOI: 10.5281/zenodo.841126 |
1 | 2020-03-25 |
2018 |
LInzner, Dominik; Koeppl, Heinz Cluster Variatonal Approximations for Structure Learning of Continuous-Time Bayesian Networks from Incomplete Data published pages: , ISSN: , DOI: 10.5281/zenodo.1966608 |
10 | 2020-03-25 |
2018 |
Gaelle Letort, Arnau Montagud, Gautier Stoll, Randy Heiland, Emmanuel Barillot, Paul Macklin, Andrei Zinovyev, Laurence Calzone PhysiBoSS: a multi-scale agent-based modelling framework integrating physical dimension and cell signalling published pages: , ISSN: 1367-4803, DOI: 10.1093/bioinformatics/bty766 |
Bioinformatics | 2020-03-25 |
2018 |
Cuklina, Jelena; Lee, Chloe; Williams, Evan G.; Sajic, Tatjana; Collins, Ben; Rodriguez-Martinez, Maria; Pedrioli, Patrick; Aebersold, Ruedi Batch effects in large-scale proteomic studies: diagnostics and correction published pages: , ISSN: , DOI: 10.5281/zenodo.1446001 |
10 | 2020-03-25 |
2018 |
Tiannan Guo, Li Li, Qing Zhong, Niels J Rupp, Konstantina Charmpi, Christine E Wong, Ulrich Wagner, Jan H Rueschoff, Wolfram Jochum, Christian Daniel Fankhauser, Karim Saba, Cedric Poyet, Peter J Wild, Ruedi Aebersold, Andreas Beyer Multi-region proteome analysis quantifies spatial heterogeneity of prostate tissue biomarkers published pages: e201800042, ISSN: 2575-1077, DOI: 10.26508/lsa.201800042 |
Life Science Alliance 1/2 | 2020-03-25 |
2018 |
Al- Sayed, Sara; Koeppl, Heinz Network Reconstruction From Time-Course Perturbation Data Using Multivariate Gaussian Processes published pages: , ISSN: , DOI: 10.5281/zenodo.1488635 |
(MLSP 2018) 2018 IEEE International Workshop on Machine Learning for Signal Processing 2 | 2020-03-25 |
2019 |
Matteo Manica, Joris Cadow, Roland Mathis, MarÃa RodrÃguez MartÃnez PIMKL: Pathway-Induced Multiple Kernel Learning published pages: , ISSN: 2056-7189, DOI: 10.1038/s41540-019-0086-3 |
npj Systems Biology and Applications 5/1 | 2020-03-25 |
2017 |
Traynard, Pauline; Beal, Jonas; Tobalina, Luis; Barillot, Emmanuel; Saez-Rodriguez, Julio; Calzone, Laurence Incorporating patient-specific molecular data into a logic model of prostate cancer published pages: , ISSN: , DOI: 10.5281/zenodo.841116 |
ISMB 2017 9 | 2020-03-25 |
2017 |
Al-Sayed, Sara; Koeppl, Heinz Fast biological network reconstruction from high-dimensional time-course perturbation data using sparse multivariate Gaussian processes published pages: , ISSN: , DOI: 10.5281/zenodo.841132 |
ISMB 2017 5 | 2020-03-25 |
2017 |
Subramanian, Vigneshwari; Szalai, Bence; Tobalina, Luis; Saez-Rodriguez, Julio Application of network diffusion approaches to drug screenings: A perspective on multilayered networks derived from drugs and cell lines published pages: , ISSN: , DOI: 10.5281/zenodo.1066906 |
NETTAB 2017 4 | 2020-03-25 |
2017 |
Cuklina, Jelena; Wu, Yibo; Williams, Evan G.; Rodriguez Martinez, Maria; Aebersold, Ruedi Selection of stable biomarker signature for prediction of metabolic phenotypes published pages: , ISSN: , DOI: 10.5281/zenodo.841208 |
ISMB 2017 6 | 2020-03-25 |
Are you the coordinator (or a participant) of this project? Plaese send me more information about the "PRECISE" project.
For instance: the website url (it has not provided by EU-opendata yet), the logo, a more detailed description of the project (in plain text as a rtf file or a word file), some pictures (as picture files, not embedded into any word file), twitter account, linkedin page, etc.
Send me an email (fabio@fabiodisconzi.com) and I put them in your project's page as son as possible.
Thanks. And then put a link of this page into your project's website.
The information about "PRECISE" are provided by the European Opendata Portal: CORDIS opendata.