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ChromatinRemodelling SIGNED

Single-Molecule And Structural Studies Of ATP-Dependent Chromatin Remodelling

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EC-Contrib. €

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Project "ChromatinRemodelling" data sheet

The following table provides information about the project.

Coordinator
UPPSALA UNIVERSITET 

Organization address
address: VON KRAEMERS ALLE 4
city: UPPSALA
postcode: 751 05
website: www.uu.se

contact info
title: n.a.
name: n.a.
surname: n.a.
function: n.a.
email: n.a.
telephone: n.a.
fax: n.a.

 Coordinator Country Sweden [SE]
 Total cost 1˙498˙954 €
 EC max contribution 1˙498˙954 € (100%)
 Programme 1. H2020-EU.1.1. (EXCELLENT SCIENCE - European Research Council (ERC))
 Code Call ERC-2016-STG
 Funding Scheme ERC-STG
 Starting year 2017
 Duration (year-month-day) from 2017-03-01   to  2022-02-28

 Partnership

Take a look of project's partnership.

# participants  country  role  EC contrib. [€] 
1    UPPSALA UNIVERSITET SE (UPPSALA) coordinator 1˙498˙954.00

Map

 Project objective

The packaging of genetic information into chromatin regulates a wide range of vital processes that depend on direct access to the DNA template. Many chromatin-interacting complexes impact chromatin structure and their aberrant regulation or dysfunction has been implicated in various cancers and severe developmental disorders. A better understanding of the roles of chromatin-interacting complexes in such disease states requires a detailed mechanistic study. Many chromatin-interacting complexes modify chromatin structure, yet understanding the underlying mechanisms remains a major challenge in the field. Furthermore, how chromatin-interacting complexes are regulated to enable their various functions is incompletely understood. We will address these longstanding questions in two specific aims. Aim I: Building on our expertise in single-molecule biology, we will develop powerful single-molecule imaging approaches to monitor the action of chromatin-interacting complexes in real time. We will further probe how the diverse activities of the chromatin-associated complexes are coordinated and coupled to conformational transitions. Aim II: Drawing on our expertise in structural biology, we will use a range of structural techniques in combination with biochemical approaches to study the vital regulation of chromatin-interacting complexes by their regulatory subunits as well as by chromatin features. We expect to obtain ground-breaking insights into the mechanisms and regulation of disease-related chromatin-associated complexes, which may open up new horizons for developing therapeutic intervention strategies. Furthermore, the approaches developed here will enable the investigation of a large number of chromatin-related processes.

 Publications

year authors and title journal last update
List of publications.
2019 Cédric Romilly, Sebastian Deindl, E. Gerhart H. Wagner
The ribosomal protein S1-dependent standby site in tisB mRNA consists of a single-stranded region and a 5′ structure element
published pages: 15901-15906, ISSN: 0027-8424, DOI: 10.1073/pnas.1904309116
Proceedings of the National Academy of Sciences 116/32 2019-10-29
2019 Anton Sabantsev, Robert F. Levendosky, Xiaowei Zhuang, Gregory D. Bowman, Sebastian Deindl
Direct observation of coordinated DNA movements on the nucleosome during chromatin remodelling
published pages: , ISSN: 2041-1723, DOI: 10.1038/s41467-019-09657-1
Nature Communications 10/1 2019-06-07
2018 Caroline Ballet, Mário S. P. Correia, Louis P. Conway, Theresa L. Locher, Laura C. Lehmann, Neeraj Garg, Miroslav Vujasinovic, Sebastian Deindl, J.-Matthias Löhr, Daniel Globisch
New enzymatic and mass spectrometric methodology for the selective investigation of gut microbiota-derived metabolites
published pages: 6233-6239, ISSN: 2041-6520, DOI: 10.1039/c8sc01502c
Chemical Science 9/29 2019-04-21
2017 Laura C. Lehmann, Graeme Hewitt, Shintaro Aibara, Alexander Leitner, Emil Marklund, Sarah L. Maslen, Varun Maturi, Yang Chen, David van der Spoel, J. Mark Skehel, Aristidis Moustakas, Simon J. Boulton, Sebastian Deindl
Mechanistic Insights into Autoinhibition of the Oncogenic Chromatin Remodeler ALC1
published pages: 847-859.e7, ISSN: 1097-2765, DOI: 10.1016/j.molcel.2017.10.017
Molecular Cell 68/5 2019-04-21
2018 Kalle Kipper, Nadja Eremina, Emil Marklund, Sumera Tubasum, Guanzhong Mao, Laura Christina Lehmann, Johan Elf, Sebastian Deindl
Structure-guided approach to site-specific fluorophore labeling of the lac repressor LacI
published pages: e0198416, ISSN: 1932-6203, DOI: 10.1371/journal.pone.0198416
PLOS ONE 13/6 2019-04-21

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