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ICEDIG SIGNED

Innovation and consolidation for large scale digitisation of natural heritage

Total Cost €

EC-Contrib. €

Partnership

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Outcomes and
results

ICEDIG project word cloud

Explore the words cloud of the ICEDIG project. It provides you a very rough idea of what is the project "ICEDIG" about.

unify complexity 80 workflows rendering models globally building industry time infrastructure icedig dissco acceptable involvement sheer data size socio digital insights scientific prototypes capacity service expertise seamlessly digitise bio cultural 55 underused community consultation outputs incentive organisational principles enhancements innovations blueprints sciences objects impacts 2 manner schemes distributed billion natural science modern citizen policy financial continent tackled accessing digitally innovation 10 technological stream biodiversity imaged critical petabyte foreseeable model unification diversity industrial digitising collection harmonised world shared geo successful governance consolidation esfri paving collections prioritisation larger greatest construction catalogued planning holding climate

Project "ICEDIG" data sheet

The following table provides information about the project.

Coordinator	HELSINGIN YLIOPISTO Organization address address: YLIOPISTONKATU 3 city: HELSINGIN YLIOPISTO postcode: 14 website: www.helsinki.fi contact info title: n.a. name: n.a. surname: n.a. function: n.a. email: n.a. telephone: n.a. fax: n.a.
Coordinator Country	Finland [FI]
Project website	https://www.icedig.eu/
Total cost	2˙999˙755 €
EC max contribution	2˙999˙755 € (100%)
Programme	1. H2020-EU.1.4.1.1. (Developing new world-class research infrastructures)
Code Call	H2020-INFRADEV-2017-1
Funding Scheme	RIA
Starting year	2018
Duration (year-month-day)	from 2018-01-01 to 2020-03-31

Partnership

Take a look of project's partnership.

#	participants	country	role	EC contrib. [€]
1	HELSINGIN YLIOPISTO HELSINGIN YLIOPISTO Organization address address: YLIOPISTONKATU 3 city: HELSINGIN YLIOPISTO postcode: 14 website: www.helsinki.fi contact info title: n.a. name: n.a. surname: n.a. function: n.a. email: n.a. telephone: n.a. fax: n.a.	FI (HELSINGIN YLIOPISTO)	coordinator	531˙756.00
2	CARDIFF UNIVERSITY CARDIFF UNIVERSITY Organization address address: NEWPORT ROAD 30-36 city: CARDIFF postcode: CF24 ODE website: www.cardiff.ac.uk contact info title: n.a. name: n.a. surname: n.a. function: n.a. email: n.a. telephone: n.a. fax: n.a.	UK (CARDIFF)	participant	472˙045.00
3	PICTURAE BV PICTURAE BV Organization address address: JAN DUIKERWEG 14 city: HEERHUGOWAARD postcode: 1703 DH website: n.a. contact info title: n.a. name: n.a. surname: n.a. function: n.a. email: n.a. telephone: n.a. fax: n.a.	NL (HEERHUGOWAARD)	participant	366˙098.00
4	NATURAL HISTORY MUSEUM NATURAL HISTORY MUSEUM Organization address address: CROMWELL ROAD city: LONDON postcode: SW7 5BD website: http://www.nhm.ac.uk/ contact info title: n.a. name: n.a. surname: n.a. function: n.a. email: n.a. telephone: n.a. fax: n.a.	UK (LONDON)	participant	324˙430.00
5	STICHTING NATURALIS BIODIVERSITY CENTER STICHTING NATURALIS BIODIVERSITY CENTER Organization address address: DARWINWEG 2 city: LEIDEN postcode: 2333CR website: www.naturalis.nl contact info title: n.a. name: n.a. surname: n.a. function: n.a. email: n.a. telephone: n.a. fax: n.a.	NL (LEIDEN)	participant	312˙381.00
6	CONSORTIUM OF EUROPEAN TAXONOMIC FACILITIES CONSORTIUM OF EUROPEAN TAXONOMIC FACILITIES Organization address address: RUE VAUTIER 29 city: BRUXELLES postcode: 1000 website: n.a. contact info title: n.a. name: n.a. surname: n.a. function: n.a. email: n.a. telephone: n.a. fax: n.a.	BE (BRUXELLES)	participant	223˙075.00
7	AGENTSCHAP PLANTENTUIN MEISE AGENTSCHAP PLANTENTUIN MEISE Organization address address: NIEUWELAAN 38 city: MEISE postcode: 1860 website: n.a. contact info title: n.a. name: n.a. surname: n.a. function: n.a. email: n.a. telephone: n.a. fax: n.a.	BE (MEISE)	participant	190˙650.00
8	PLAZI GMBH PLAZI GMBH Organization address address: ZINGGSTRASSE 16 city: BERN postcode: 3007 website: n.a. contact info title: n.a. name: n.a. surname: n.a. function: n.a. email: n.a. telephone: n.a. fax: n.a.	CH (BERN)	participant	169˙813.00
9	MUSEUM NATIONAL D'HISTOIRE NATURELLE MUSEUM NATIONAL D'HISTOIRE NATURELLE Organization address address: RUE CUVIER 57 city: PARIS postcode: 75005 website: http://www.mnhn.fr contact info title: n.a. name: n.a. surname: n.a. function: n.a. email: n.a. telephone: n.a. fax: n.a.	FR (PARIS)	participant	133˙875.00
10	CENTRE INFORMATIQUE NATIONAL DE L'ENSEIGNEMENT SUPERIEUR CENTRE INFORMATIQUE NATIONAL DE L'ENSEIGNEMENT SUPERIEUR Organization address address: 950 RUE DE ST PRIEST city: MONTPELLIER postcode: 34097 website: n.a. contact info title: n.a. name: n.a. surname: n.a. function: n.a. email: n.a. telephone: n.a. fax: n.a.	FR (MONTPELLIER)	participant	126˙250.00
11	TARTU ULIKOOL TARTU ULIKOOL Organization address address: ULIKOOLI 18 city: TARTU postcode: 51005 website: www.ut.ee contact info title: n.a. name: n.a. surname: n.a. function: n.a. email: n.a. telephone: n.a. fax: n.a.	EE (TARTU)	participant	75˙125.00
12	ROYAL BOTANIC GARDENS KEW ROYAL BOTANIC GARDENS KEW Organization address address: ROYAL BOTANIC GARDENS KEW city: RICHMOND postcode: TW93AB website: http://www.rbgkew.org.uk contact info title: n.a. name: n.a. surname: n.a. function: n.a. email: n.a. telephone: n.a. fax: n.a.	UK (RICHMOND)	participant	74˙255.00

Map

Project objective

Modern science requires digital access to data. European collections account for 55% of the natural sciences collections globally, holding more than 1 billion objects, which represent 80% of the world’s bio- and geo-diversity. Only around 10% of these have been digitally catalogued and 1-2% imaged, rendering their information underused. The sheer scale and complexity of digitising and providing access to this information requires technological, socio-cultural, and organisational capacity enhancements across the continent. This challenge is being tackled by the new ESFRI initiative Distributed System of Scientific Collections (DiSSCo). DiSSCo will unify access to collection data in a harmonised and integrated manner across Europe. It will enable critical new insights from integrated digital data to address some of the world's greatest challenges, such as biodiversity loss and impacts of climate change. However, new research and technological innovation will be required to solve the challenges of efficiently digitising and seamlessly accessing the collections. Building on previous project outputs, community and industrial expertise, the ICEDIG project will design all the technical, financial, policy and governance aspects for developing and operating DiSSCo. A consolidation stream will develop a shared governance model to support all aspects of service unification such as implementation of the open access principles, incentive schemes, planning and prioritisation, capacity development, etc. A technology stream will focus on the innovations that will be required to digitise a significant part of major collections in a foreseeable time, at acceptable cost, and to manage petabyte-size data. The work will be carried out in wide consultation with the larger community. The outputs will be prototypes, blueprints, novel workflows, new industry partnerships, and citizen involvement models, paving the way for the successful construction of the DiSSCo research infrastructure.

Deliverables

List of deliverables.
Natural history collections and digital skills of citizens	Documents, reports	2020-02-25 08:49:31
Prioritizing scientific and societal needs for data of small and private collections	Documents, reports	2020-02-25 08:49:31
State of the art and perspectives on mass imaging of skins and other vertebrate material	Documents, reports	2020-02-25 08:49:32
Data quality in transcription	Documents, reports	2020-02-25 08:49:31
Digitisation infrastructure design for EUDAT	Documents, reports	2020-02-25 08:49:31
Design of a collection digitization dashboard	Demonstrators, pilots, prototypes	2020-02-25 08:49:31
Updating data standards in transcription	Documents, reports	2020-02-25 08:49:31
Improving the detection of collection-based citizen science projects	Documents, reports	2020-02-25 08:49:31
State of the art and perspectives on mass imaging of liquid samples	Documents, reports	2020-02-25 08:49:32
Inventory of criteria for prioritization of digitization of collections focussed on scientific and societal needs	Documents, reports	2020-02-25 08:49:29
State of the art and perspectives on mass imaging of microscopic and other slides	Documents, reports	2020-02-25 08:49:31
Methods for automated text digitization	Documents, reports	2020-02-25 08:49:31
Interoperability with institutional collection management systems	Documents, reports	2020-02-25 08:49:31
Communication and dissemination plan	Documents, reports	2020-02-25 08:49:29
Data management plan of the ICEDIG project	Open Research Data Pilot	2020-02-25 08:49:29

Take a look to the deliverables list in detail: detailed list of ICEDIG deliverables.

Publications

List of publications.
year	authors and title	journal	last update
2019	Zhengzhe Wu, Jere KahanpÃ¤Ã¤, Pasi Sihvonen, Anne Koivunen, Hannu Saarenmaa Automated Methods in Digitisation of Pinned Insects published pages: , ISSN: 2535-0897, DOI: 10.3897/biss.3.38260	Biodiversity Information Science and Standards 3	2020-02-25
2019	Mathias Dillen, Quentin Groom, Donat Agosti, Lars Nielsen Zenodo, an Archive and Publishing Repository: A tale of two herbarium specimen pilot projects published pages: , ISSN: 2535-0897, DOI: 10.3897/biss.3.37080	Biodiversity Information Science and Standards 3	2020-02-25
2019	E Louise Allan, Laurence Livermore, Benjamin Price, Olha Shchedrina, Vincent Smith A Novel Automated Mass Digitisation Workflow for Natural History Microscope Slides published pages: , ISSN: 1314-2828, DOI: 10.3897/bdj.7.e32342	Biodiversity Data Journal 7	2020-02-25
2018	Le Bras, GwenaÃ«l; Chagnoux, Simon Evaluation of Existing Volunteer Transcription Systems published pages: , ISSN: , DOI: 10.5281/zenodo.2578938	1	2020-02-25
2019	Egmond, E. van, L. Willemse, D. Paul, M. Woodburn, A. Casino, K. GÃ¶dderz, X. Vermeersch, J. Bloothoofd, A. Wijers and N. Raes Design of a Collection Digitisation Dashboard published pages: , ISSN: , DOI: 10.5281/zenodo.2621055		2020-02-25
2018	Price, B. W., Dupont, S., Allan, E. L., Blagoderov, V., Butcher, A. J., Durrant, J., Holtzhausen, P., Kokkini, P., Livermore, L. & Smith, V. ALICE: Angled Label Image Capture and Extraction for high throughput insect specimen digitisation published pages: , ISSN: , DOI: 10.31219/osf.io/s2p73		2020-02-25
2018	Henry Engledow, Sofie De Smedt, Ann Bogaerts, Quentin Groom An Evaluation of In-house versus Out-sourced Data Capture at the Meise Botanic Garden (BR) published pages: e26514, ISSN: 2535-0897, DOI: 10.3897/biss.2.26514	Biodiversity Information Science and Standards 2	2020-02-25
2018	Allan, E. L., Price, B. W., Shchedrina, O., Dupont, S., Livermore, L., & Smith, V. A Low Cost Approach to Specimen Level Imaging of Natural History Microscope Slides using a DSLR System published pages: , ISSN: , DOI: 10.31219/osf.io/dvmsh		2020-02-25
2019	Mathias Dillen, Quentin Groom, Sarah Phillips, Irena Spasic Next Steps in Data Capture from Specimen Labels and Data Integration: Lessons learnt from the ICEDIG pilots published pages: , ISSN: 2535-0897, DOI: 10.3897/biss.3.37081	Biodiversity Information Science and Standards 3	2020-02-25
2019	Cazenave Nicolas; BÃ©chard LorÃ¨ne; Rouchon Olivier Digitisation infrastructure design for EUDAT / CINES published pages: , ISSN: , DOI: 10.5281/zenodo.3364533	2	2020-02-25
2019	GwenaÃ«l Le Bras; Simon Chagnoux Interactions between the communities of Les Herbonautes and Die Herbonauten: Observation notes published pages: , ISSN: , DOI: 10.5281/zenodo.2599714	1	2020-02-25
2019	Phillips Sarah; Dillen Mathias; Groom Quentin; Green Laura; Weech Marie- HÃ©lÃ¨ne; Wijkamp Noortje Report on New Methods for Data Quality Assurance, Verification and Enrichment published pages: , ISSN: , DOI: 10.5281/zenodo.3364509	6	2020-02-25
2019	Runnel Veljo; Wijers Agnes Improving the detection of collection-based citizen science projects published pages: , ISSN: , DOI: 10.5281/zenodo.3364519	8	2020-02-25
2019	Le Bras, GwenaÃ«l; Chagnoux, Simon; Dillen, Mathias Specification of data exchange format for transcription platforms published pages: , ISSN: , DOI: 10.5281/zenodo.2598413	1	2020-02-25
2019	van Egmond, E.M.; Willemse, L.; Runnel, V.; Saarenmaa, H.; Koivunen, A.; Lahti, K.; Livermore, L. Prioritising scientific and societal needs for data of private natural history collections published pages: , ISSN: , DOI: 10.5281/zenodo.2582994	1	2020-02-25
2019	Allan Louise E.; Price Benjamin W.; Shchedrina Olha; Dupont Steen; Livermore Laurence; Smith Vince S. Mass-imaging of microscopic and other slides published pages: , ISSN: 1314-2828, DOI: 10.5281/zenodo.3364481	Biodiversity Data Journal 1	2020-02-25
2019	Abraham Nieva de la Hidalga, Alex Hardisty Making Heterogeneous Specimen Data â€˜FAIRâ€™: Implementing a digital specimen repository published pages: , ISSN: 2535-0897, DOI: 10.3897/biss.3.37163	Biodiversity Information Science and Standards 3	2020-02-25
2019	Sarah Phillips, Mathias Dillen, Laura Green, Quentin Groom, Marie-Helene Weech Evaluating Methods for Transcribing Specimen Labels published pages: , ISSN: 2535-0897, DOI: 10.3897/biss.3.37306	Biodiversity Information Science and Standards 3	2020-02-25
2018	Bakker, Hannco P.A.J.; Willemse, Luc; van Egmond, Emily; Casino, Ana; GÃ¶dderz, Karsten; Vermeersch, Xavier Inventory of criteria for prioritization of digitisation of collections focussed on scientific and societal needs published pages: , ISSN: , DOI: 10.5281/zenodo.2579156		2020-02-25
2019	Runnel Veljo; Hardy Helen; Sanghera Harpreet; Robinson Lucy; Shennan Victoria; Livermore Laurence; De Smedt Sofie Natural history collections and digital skills of citizens published pages: , ISSN: , DOI: 10.5281/zenodo.3364541	1	2020-02-25
2019	Mathias Dillen; Quentin Groom; Alex Hardisty Interoperability of Collection Management Systems published pages: , ISSN: , DOI: 10.5281/zenodo.3361598	3	2020-02-25
2019	Niels Raes, Emily van Egmond, Ana Casino, Matt Woodburn, Deborah L Paul Towards a Global Collection Description Standard published pages: , ISSN: 2535-0897, DOI: 10.3897/biss.3.37894	Biodiversity Information Science and Standards 3	2020-02-25
2018	Saarenmaa Hannu; Agosti Donat; Chagnoux Simon; van Egmond Emily; Groom Quenting; Hardisty Alex ICEDIG - Data Management Plan published pages: , ISSN: , DOI: 10.5281/zenodo.3364523	5	2020-02-25
2019	Saarenmaa, Hannu; Agosti, Donat; Dillen, Matthias; Egloff, Willi; Gagnier, Pierre-Yves; Groom, Quentin; Hardisty, Alex; Raes, Niels Report on implementation of open access policies in collection institutions. MILESTONE â€“ MS35 published pages: , ISSN: , DOI: 10.5281/zenodo.2632740	1	2020-02-25
2019	Toivo Ylinampa, Hannu Saarenmaa ENTODIG-3D published pages: , ISSN: 2535-0897, DOI: 10.3897/biss.3.37473	Biodiversity Information Science and Standards 3	2020-02-25
2019	Luc Willemse, Emily van Egmond, Veljo Runnel, Hannu Saarenmaa, Ana Rubio, Karsten GÃ¶dderz, Xavier Vermeersch Future Challenges in Digitisation of Private Natural History Collections published pages: , ISSN: 2535-0897, DOI: 10.3897/biss.3.37640	Biodiversity Information Science and Standards 3	2020-02-25
2019	van Walsum Myriam; van der Mije Steven; Wijers Agnes; Willemse Luc State of the art and perspectives on mass imaging of skins and other vertebrate material published pages: , ISSN: , DOI: 10.5281/zenodo.3364385	9	2020-02-25
2018	Sarah Phillips, Elspeth Haston, Laura Green, Marie-Helene Weech, Robert Cubey, Sally King, Robyn Drinkwater State of Digitisation and Gap Analysis Surveys published pages: e25969, ISSN: 2535-0897, DOI: 10.3897/biss.2.25969	Biodiversity Information Science and Standards 2	2020-02-25
2019	Abraham Nieva de la Hidalga, David Owen, Irena Spacic, Paul Rosin, Xianfang Sun Use of Semantic Segmentation for Increasing the Throughput of Digitisation Workflows for Natural History Collections published pages: , ISSN: 2535-0897, DOI: 10.3897/biss.3.37161	Biodiversity Information Science and Standards 3	2020-02-25
2018	Quentin Groom, Ann Bogaerts, Sofie De Smedt, Sarah Phillips Crowdsourcing, is it a good option for your collection digitization? published pages: e25410, ISSN: 2535-0897, DOI: 10.3897/biss.2.25410	Biodiversity Information Science and Standards 2	2020-02-25
2019	Lannom, L., Koureas, D., and Hardisty, A.R. FAIR Data and Services in Biodiversity Science and Geoscience published pages: , ISSN: 2641-435X, DOI:	Data Intelligence special issue: â€˜FAIR best practicesâ€™	2020-02-25
2018	Hardisty, A. R. Widening access to European natural science collections with Digital Specimens and Natural Science Identifiers (NSId) published pages: , ISSN: , DOI:		2020-02-25
2018	CETAF Communication and dissemination plan published pages: , ISSN: , DOI:		2020-02-25
2019	Alex Hardisty, Keping Ma, Gil Nelson, Jose Fortes â€˜openDSâ€™ â€“ A New Standard for Digital Specimens and Other Natural Science Digital Object Types published pages: , ISSN: 2535-0897, DOI: 10.3897/biss.3.37033	Biodiversity Information Science and Standards 3	2020-02-25
2018	Engledow, Henry, De Smedt, Sofie, Bogaerts, Ann, & Groom, Quentin An Evaluation of In-house versus Out-sourced Data Capture at the Meise Botanic Garden (BR) published pages: , ISSN: , DOI: 10.5281/zenodo.1445426		2020-02-25
2018	Fabian Reimeier, Dominik RÃ¶pert, Anton GÃ¼ntsch, Agnes Kirchhoff, Walter G. Berendsohn Service-based information extraction from herbarium specimens published pages: e25415, ISSN: 2535-0897, DOI: 10.3897/biss.2.25415	Biodiversity Information Science and Standards 2	2020-02-25
2019	Abraham Nieva de la Hidalga, Nicolas Cazenave, Donat Agosti, Zhengzhe Wu, Mathias Dillen, Lars Nielsen Use of European Open Science Cloud and National e-Infrastructures for the Long-Term Storage of Digitised Assets from Natural History Collections published pages: , ISSN: 2535-0897, DOI: 10.3897/biss.3.37164	Biodiversity Information Science and Standards 3	2020-02-25
2019	Niels Raes, Emily van Egmond, Wouter Addink, Alex Hardisty Requirement Analysis for the DiSSCo Research Infrastructure published pages: , ISSN: 2535-0897, DOI: 10.3897/biss.3.37892	Biodiversity Information Science and Standards 3	2020-02-25
2019	Alex Hardisty, Larry Lannom, Dimitris Koureas, Wouter Addink, Claus Weiland â€˜The Last Mileâ€™: The registry behind the identifier published pages: , ISSN: 2535-0897, DOI: 10.3897/biss.3.37034	Biodiversity Information Science and Standards 3	2020-02-25
2018	Dimitrios Koureas, Wouter Addink, Alex Hardisty Digital Object Cloud for linking natural science collections information;Â The case of DiSSCoÂ published pages: e25474, ISSN: 2535-0897, DOI: 10.3897/biss.2.25474	Biodiversity Information Science and Standards 2	2020-02-25

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