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FRUIT BREEDOMICS

Integrated approach for increasing breeding efficiency in fruit tree crops

Coordinatore	INSTITUT NATIONAL DE LA RECHERCHE AGRONOMIQUE Organization address address: Rue De L'Universite 147 city: PARIS CEDEX 07 postcode: 75338 contact info Titolo: Ms. Nome: Emilie Cognome: Briand-Dubreuil Email: send email Telefono: +33 2 40675154 Fax: +33 2 40675005
Nazionalità Coordinatore	France [FR]
Totale costo	10˙246˙243 €
EC contributo	5˙999˙296 €
Programma	FP7-KBBE Specific Programme "Cooperation": Food, Agriculture and Biotechnology
Code Call	FP7-KBBE-2010-4
Funding Scheme	CP-IP
Anno di inizio	2011
Periodo (anno-mese-giorno)	2011-03-01 - 2015-08-31

Partecipanti

#	participant	country	role	EC contrib. [€]
1	INSTITUT NATIONAL DE LA RECHERCHE AGRONOMIQUE Organization address address: Rue De L'Universite 147 city: PARIS CEDEX 07 postcode: 75338 contact info Titolo: Ms. Nome: Emilie Cognome: Briand-Dubreuil Email: send email Telefono: +33 2 40675154 Fax: +33 2 40675005	FR (PARIS CEDEX 07)	coordinator	1˙326˙701.40
2	STICHTING DIENST LANDBOUWKUNDIG ONDERZOEK Organization address address: Costerweg 50 city: WAGENINGEN postcode: 6701BH contact info Nome: Erwin Cognome: Jolink Email: send email Telefono: +31 317 489592 Fax: +31 317 418094	NL (WAGENINGEN)	participant	969˙621.75
3	INSTITUT DE RECERCA I TECNOLOGIA AGROALIMENTARIES. Organization address address: Passeig de Gracia, 44 3 planta city: BARCELONA postcode: 8007 contact info Titolo: Mr. Nome: De La Cuesta Cognome: Jordi Email: send email Telefono: +34 934674040 Fax: +34 937533954	ES (BARCELONA)	participant	760˙738.30
4	FONDAZIONE EDMUND MACH Organization address address: VIA EDMONDO MACH 1 city: SAN MICHELE ALL'ADIGE postcode: 38010 contact info Titolo: Dr. Nome: Roberto Cognome: Viola Email: send email Telefono: +39 0461 615427 Fax: +39 0461 615183	IT (SAN MICHELE ALL'ADIGE)	participant	546˙777.50
5	EIDGENOESSISCHES DEPARTEMENT FUER WIRTSCHAFT, BILDUNG UND FORSCHUNG Organization address address: Bundeshaus Ost city: BERN postcode: 3003 contact info Titolo: Dr. Nome: Andrea Cognome: Patocchi Email: send email Telefono: +41 44 783 63 13 Fax: +41 44 7836211	CH (BERN)	participant	391˙420.00
6	ALMA MATER STUDIORUM-UNIVERSITA DI BOLOGNA Organization address address: Via Zamboni 33 city: BOLOGNA postcode: 40126 contact info Titolo: Prof. Nome: Luca Cognome: Corelli Grappadelli Email: send email Telefono: +39 051 20 96434 Fax: +39 051 20 96401	IT (BOLOGNA)	participant	345˙692.80
7	INRA TRANSFERT S.A. Organization address address: RUE DU DOCTEUR FINLAY 28 city: PARIS postcode: 75015 contact info Titolo: Dr. Nome: Bao Cognome: Diep Tuong Email: send email Telefono: +33 1 42759236 Fax: +33 1 55352646	FR (PARIS)	participant	306˙789.00
8	UNIVERSITA DEGLI STUDI DI MILANO Organization address address: Via Festa Del Perdono 7 city: MILANO postcode: 20122 contact info Titolo: Ms. Nome: Elena Cognome: Arioni Email: send email Telefono: +39 0250316598 Fax: +39 0250316521	IT (MILANO)	participant	259˙796.40
9	JULIUS KUHN-INSTITUT BUNDESFORSCHUNGSINSTITUT FUR KULTURPFLANZEN Organization address address: ERWIN-BAUR-STRASSE 27 city: QUEDLINBURG postcode: 6484 contact info Titolo: Mr. Nome: Knut Cognome: Steffens Email: send email Telefono: +49 531 2993270 Fax: +49 531 2993023	DE (QUEDLINBURG)	participant	236˙970.40
10	PARCO TECNOLOGICO PADANO S.R.L. Organization address address: Via Einstein - Localita Cascina Codazza city: LODI postcode: 26900 contact info Titolo: Dr. Nome: Gianluca Cognome: Carenzo Email: send email Telefono: +39 03714662215 Fax: +39 0371 4662217	IT (LODI)	participant	232˙439.20
11	CONSIGLIO PER LA RICERCA IN AGRICOLTURA E L'ANALISI DELL'ECONOMIA AGRARIA Organization address address: Via Nazionale 82 city: ROMA postcode: 184 contact info Titolo: Dr. Nome: Guido Cognome: Cipriani Email: send email Telefono: +39 0679348107 Fax: +39 0679340158	IT (ROMA)	participant	131˙477.80
12	CENTRE WALLON DE RECHERCHES AGRONOMIQUES Organization address address: Rue de Liroux 9 city: GEMBLOUX postcode: 5030 contact info Titolo: Dr. Nome: Yves Cognome: Schenkel Email: send email Telefono: +32 81 626556 Fax: +32 81 626559	BE (GEMBLOUX)	participant	109˙285.20
13	EIDGENOESSISCHE TECHNISCHE HOCHSCHULE ZURICH Organization address address: Raemistrasse 101 city: ZUERICH postcode: 8092 contact info Titolo: Prof. Nome: Cesare Cognome: Gessler Email: send email Telefono: +41 44 632 38 71 Fax: +41 44 632 15 72	CH (ZUERICH)	participant	80˙515.20
14	Zhejiang University Organization address address: ZHE DA ROAD 38 city: HANGZHOU postcode: 310027 contact info Titolo: Dr. Nome: Zhongshan Cognome: Gao Email: send email Telefono: +86 571 86971172 Fax: +86 571 86971630	CN (HANGZHOU)	participant	66˙467.00
15	THE UNIVERSITY OF READING Organization address address: WHITEKNIGHTS CAMPUS WHITEKNIGHTS HOUSE city: READING postcode: RG6 6AH contact info Titolo: Ms. Nome: Liz Cognome: Stansfield Email: send email Telefono: +44 118 3787397 Fax: +44 110 378 8979	UK (READING)	participant	41˙222.00
16	VYZKUMNY A SLECHTITELSKY USTAV OVOCNARSKY HOLOVOUSY S.R.O. Organization address address: Holovousy 1 city: Horice postcode: 50801 contact info Titolo: Dr. Nome: Frantisek Cognome: Paprstein Email: send email Telefono: +42 0493691066 Fax: +42 0493692833	CZ (Horice)	participant	36˙875.25
17	THE AGRICULTURAL RESEARCH ORGANISATION OF ISRAEL - THE VOLCANI CENTRE Organization address address: Derech Hamcabim 68 city: BET DAGAN postcode: 50250 contact info Titolo: Ms. Nome: Ruth Cognome: Lerer Email: send email Telefono: +942 3 9683229 Fax: +972 3 9693998	IL (BET DAGAN)	participant	35˙282.40
18	NERI DANIELE Organization address address: VIA SACRAMORA 15 city: FAENZA RAVENNA postcode: 48018 contact info Titolo: Mr. Nome: Daniele Cognome: Neri Email: send email Telefono: +39 0546 639169 Fax: +39 0546 639169	IT (FAENZA RAVENNA)	participant	31˙372.40
19	RUSTICAS DEL GUADALQUIVIR SL Organization address address: FINCA CASABLANQUILLA (S. JOSE) 47 city: SAN JOSE DE LA RINCONADA postcode: 41309 contact info Titolo: Mr. Nome: Jean Clement Cognome: Marcaillou Email: send email Telefono: +34 629 473163 Fax: +34 955 790162	ES (SAN JOSE DE LA RINCONADA)	participant	26˙370.30
20	NOVADI SARL Organization address address: JEAN BALDASSINI 23 city: LYON postcode: 69364 contact info Titolo: Ms. Nome: Elisa Cognome: Grillet Email: send email Telefono: +33 4 72724902 Fax: +33 4 78580327	FR (LYON)	participant	24˙938.00
21	AGRO SELECTIONS FRUITS SAS Organization address address: LA PRADE DE MOUSSEILLOUS city: ELNE postcode: 66200 contact info Titolo: Ms. Nome: Laurence Cognome: Maillard Email: send email Telefono: +33 4 68378880 Fax: +33 4 68371583	FR (ELNE)	participant	22˙119.30
22	BETTER3FRUIT NV Organization address address: Willem de Croylaan 42 city: Heverlee postcode: 3001 contact info Titolo: Dr. Nome: Willy Cognome: Dillen Email: send email Telefono: +32 16 241610 Fax: +32 16 228895	BE (Heverlee)	participant	16˙424.40
23	AGRICULTURAL RESEARCH COUNCIL (ARC) Organization address address: "1134 Park Street, Hatfield" city: PRETORIA postcode: 83 contact info Titolo: Mr. Nome: Kenneth Richard Cognome: Tobutt Email: send email Telefono: +27 218741056 Fax: +27 218742006	ZA (PRETORIA)	participant	0.00
24	CENTRO DI SPERIMENTAZIONE AGRARIA E FORESTALE LAIMBURG AZIENDA Organization address address: LAIMBURG 6 city: AUER PFATTEN postcode: 39040 contact info Titolo: Mr. Nome: Daniel Cognome: Bedin Email: send email Telefono: +39 0471 969700 Fax: +39 0471 969799	IT (AUER PFATTEN)	participant	0.00
25	KATHOLIEKE UNIVERSITEIT LEUVEN Organization address address: Oude Markt 13 city: LEUVEN postcode: 3000 contact info Titolo: Ms. Nome: Tine Cognome: Heylen Email: send email Telefono: +32 16 32 65 20 Fax: +32 16 326515	BE (LEUVEN)	participant	0.00
26	The New Zealand Institute for Plant and Food Research Limited Organization address address: Mount Albert Road 120 city: AUCKLAND postcode: 1025 contact info Titolo: Mr. Nome: Allan Cognome: White Email: send email Telefono: +64 6 9758892 Fax: +64 6 9758881	NZ (AUCKLAND)	participant	0.00

Mappa

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valuable tested populations germplasm resistance breedomics gwa genotyping genetic introduce rosaceae fruit data material traits species genetics diversity cultivars bioinformatics commercial tree breeding family collections apple breeders database genes tools researchers array peach efficiency molecular quality

Obiettivo del progetto (Objective)

'Fruit Breedomics has as its strategic goal to improve the efficiency of fruit breeding by bridging the gap between scientific genetics research and application in breeding. Fruit Breedomics takes a multidisciplinary approach, including genetics, genomics, ecophysiology and bioinformatics, to improve the efficiency apple and peach breeding programmes by: i) developing new and adapted tools, ii) studying a wide range of traits to enlarge the coverage of selection criteria, iii) analysing and exploiting the wide genetic diversity available, iv) making the research outputs (valuable traits, genetic markers and genes, innovative tools and methodologies, new plant material) directly applicable for the breeders, v) establishing a stakeholder network. Fruit Breedomics will provide the European fruit tree sector with cutting-edge breeding tools to improve selection efficiency as well as superior pre-breeding material to meet grower and consumer demands for healthy cultivars of high quality that can be grown in sustainable agriculture systems in the context of climate change. The project will develop tailored molecular and bioinformatics tools to extensively exploit the diversity present in European germplasm collections and breeding populations. This will lead to the selection of desired favourable genes needed for improvement of main horticultural traits. The collected data will provide precious genetic information on the pool of genitors and founders to be used in future breeding programmes. The project will focus primarily on apple and peach, two major fruits in Europe, but many tools and much knowledge gained will also be of benefit to other species of the Rosaceae family via the strong ancestral relatedness among these species.'

Introduzione (Teaser)

Researchers in the EU have formed a consortium to encourage the use of new genetic tools for improved commercial fruit breeding.

Descrizione progetto (Article)

Over the last decade, researchers have produced a wealth of genomic information about fruit trees as well as an array of valuable breeding tools. However, there is a need to collate and order this information so that commercial breeders can use it to their advantage.

The 'Integrated approach for increasing breeding efficiency in fruit tree crops' (http://fruitbreedomics.com/ (FRUIT BREEDOMICS)) project was established to improve the efficiency of apple and peach tree breeding. Project partners developed molecular and bioinformatics tools to exploit the diversity found in European fruit tree collections and breeding populations.

Researchers conducted apple and peach surveys to identify the most important traits and develop a better understanding of current breeding strategies. Cultivars with resistance to common diseases in peach and apple were characterised and used to introduce and/or combine these traits in breeding materials through crossing.

A fast breeding approach was developed and used to introduce resistance to fire blight, a contagious disease in apples and other members of the Rosaceae family. Researchers also designed a new method to facilitate the rapid genotyping of apple germplasm.

A pilot study determined the quality of genotyping by DNA sequence data and evaluated the problems of missing data in apple genome-wide association (GWA) studies. The GWA study examined common genetic variants in different individuals to determine if any variant was associated with a particular trait.

A relational database for the collection of phenotypes was developed and a user-database interface created for the management and exploration of the database content. For genotyping data, the team developed tools for semi-automated data input.

Researchers reviewed a wide array of software for linking genetics to physical traits, and tested these tools on various cultivars. This process yielded a number of promising tools, which have been further tested on large collections of genetic data.