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COMPARE SIGNED

COllaborative Management Platform for detection and Analyses of (Re-)emerging and foodborne outbreaks in Europe

Total Cost €

EC-Contrib. €

Partnership

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Outcomes and
results

COMPARE project word cloud

Explore the words cloud of the COMPARE project. It provides you a very rough idea of what is the project "COMPARE" about.

foodborne treatment purpose training ncbi sustainable analytical rapid time tuned animal flexible food scalable databases harmonised disease public risk workflows interrogation generating link detection tested efsa combination serves underpinning framework ecdc diseases fine outbreak identification infectious outbreaks pathogen pandemic supporting consultations extensive sequence interpretation inter effectiveness safety complementary linked compare clinical actionable data molecular mitigation epidemiological sectorial epidemic infections platform interdisciplinary diagnosis harness sharing healthcare borne tools collection active zoonotic networks samples functionalities barriers patient source health pathogens international communication human investigation exchange re

Project "COMPARE" data sheet

The following table provides information about the project.

Coordinator	DANMARKS TEKNISKE UNIVERSITET Organization address address: ANKER ENGELUNDSVEJ 1 BYGNING 101 A city: KGS LYNGBY postcode: 2800 website: www.dtu.dk contact info title: n.a. name: n.a. surname: n.a. function: n.a. email: n.a. telephone: n.a. fax: n.a.
Coordinator Country	Denmark [DK]
Project website	http://www.compare-europe.eu/
Total cost	20˙847˙771 €
EC max contribution	20˙817˙771 € (100%)
Programme	1. H2020-EU.3.1.2. (Preventing disease)
Code Call	H2020-PHC-2014-single-stage
Funding Scheme	RIA
Starting year	2014
Duration (year-month-day)	from 2014-12-01 to 2019-11-30

Partnership

Take a look of project's partnership.

#	participants	country	role	EC contrib. [€]
1	DANMARKS TEKNISKE UNIVERSITET DANMARKS TEKNISKE UNIVERSITET Organization address address: ANKER ENGELUNDSVEJ 1 BYGNING 101 A city: KGS LYNGBY postcode: 2800 website: www.dtu.dk contact info title: n.a. name: n.a. surname: n.a. function: n.a. email: n.a. telephone: n.a. fax: n.a.	DK (KGS LYNGBY)	coordinator	3˙006˙000.00
2	ERASMUS UNIVERSITAIR MEDISCH CENTRUM ROTTERDAM ERASMUS UNIVERSITAIR MEDISCH CENTRUM ROTTERDAM Organization address address: DR MOLEWATERPLEIN 40 city: ROTTERDAM postcode: 3015 GD website: www.erasmusmc.nl contact info title: n.a. name: n.a. surname: n.a. function: n.a. email: n.a. telephone: n.a. fax: n.a.	NL (ROTTERDAM)	participant	2˙656˙641.00
3	EUROPEAN MOLECULAR BIOLOGY LABORATORY EUROPEAN MOLECULAR BIOLOGY LABORATORY Organization address address: Meyerhofstrasse 1 city: HEIDELBERG postcode: 69117 website: http://www.embl.de contact info title: n.a. name: n.a. surname: n.a. function: n.a. email: n.a. telephone: n.a. fax: n.a.	DE (HEIDELBERG)	participant	1˙950˙000.00
4	FRIEDRICH LOEFFLER INSTITUT - BUNDESFORSCHUNGSINSTITUT FUER TIERGESUNDHEIT FRIEDRICH LOEFFLER INSTITUT - BUNDESFORSCHUNGSINSTITUT FUER TIERGESUNDHEIT Organization address address: SUDUFER 10 city: GREIFSWALD-INSEL RIEMS postcode: 17493 website: www.fli.bund.de contact info title: n.a. name: n.a. surname: n.a. function: n.a. email: n.a. telephone: n.a. fax: n.a.	DE (GREIFSWALD-INSEL RIEMS)	participant	1˙000˙000.00
5	THE SECRETARY OF STATE FOR ENVIRONMENT, FOOD AND RURAL AFFAIRS THE SECRETARY OF STATE FOR ENVIRONMENT, FOOD AND RURAL AFFAIRS Organization address address: Area 1A, Nobel House, Smith Square 17 city: LONDON postcode: SW1P 3JR website: n.a. contact info title: n.a. name: n.a. surname: n.a. function: n.a. email: n.a. telephone: n.a. fax: n.a.	UK (LONDON)	participant	971˙361.00
6	STATENS SERUM INSTITUT STATENS SERUM INSTITUT Organization address address: ARTILLERIVEJ 5 city: KOBENHAVN S postcode: 2300 website: www.ssi.dk contact info title: n.a. name: n.a. surname: n.a. function: n.a. email: n.a. telephone: n.a. fax: n.a.	DK (KOBENHAVN S)	participant	919˙750.00
7	RIJKSINSTITUUT VOOR VOLKSGEZONDHEID EN MILIEU RIJKSINSTITUUT VOOR VOLKSGEZONDHEID EN MILIEU Organization address address: Antonie Van Leeuwenhoeklaan 9 city: BILTHOVEN postcode: 3721 MA website: www.rivm.nl contact info title: n.a. name: n.a. surname: n.a. function: n.a. email: n.a. telephone: n.a. fax: n.a.	NL (BILTHOVEN)	participant	759˙500.00
8	ROBERT KOCH-INSTITUT ROBERT KOCH-INSTITUT Organization address address: Nordufer 20 city: Berlin postcode: 13353 website: www.rki.de contact info title: n.a. name: n.a. surname: n.a. function: n.a. email: n.a. telephone: n.a. fax: n.a.	DE (Berlin)	participant	718˙000.00
9	THE UNIVERSITY OF EDINBURGH THE UNIVERSITY OF EDINBURGH Organization address address: OLD COLLEGE, SOUTH BRIDGE city: EDINBURGH postcode: EH8 9YL website: www.ed.ac.uk contact info title: n.a. name: n.a. surname: n.a. function: n.a. email: n.a. telephone: n.a. fax: n.a.	UK (EDINBURGH)	participant	697˙258.00
10	ISTITUTO SUPERIORE DI SANITA ISTITUTO SUPERIORE DI SANITA Organization address address: Viale Regina Elena 299 city: ROMA postcode: 161 website: http://www.iss.it contact info title: n.a. name: n.a. surname: n.a. function: n.a. email: n.a. telephone: n.a. fax: n.a.	IT (ROMA)	participant	603˙125.00
11	ACADEMISCH MEDISCH CENTRUM BIJ DE UNIVERSITEIT VAN AMSTERDAM ACADEMISCH MEDISCH CENTRUM BIJ DE UNIVERSITEIT VAN AMSTERDAM Organization address address: MEIBERGDREEF 15 city: AMSTERDAM postcode: 1105AZ website: www.amc.nl contact info title: n.a. name: n.a. surname: n.a. function: n.a. email: n.a. telephone: n.a. fax: n.a.	NL (AMSTERDAM)	participant	602˙795.00
12	AGENCE NATIONALE DE LA SECURITE SANITAIRE DE L ALIMENTATION DE L ENVIRONNEMENT ET DU TRAVAIL AGENCE NATIONALE DE LA SECURITE SANITAIRE DE L ALIMENTATION DE L ENVIRONNEMENT ET DU TRAVAIL Organization address address: 14 RUE PIERRE ET MARIE CURIE city: MAISONS ALFORT postcode: 94700 website: www.anses.fr contact info title: n.a. name: n.a. surname: n.a. function: n.a. email: n.a. telephone: n.a. fax: n.a.	FR (MAISONS ALFORT)	participant	601˙250.00
13	THE CHANCELLOR MASTERS AND SCHOLARSOF THE UNIVERSITY OF CAMBRIDGE THE CHANCELLOR MASTERS AND SCHOLARSOF THE UNIVERSITY OF CAMBRIDGE Organization address address: TRINITY LANE THE OLD SCHOOLS city: CAMBRIDGE postcode: CB2 1TN website: www.cam.ac.uk contact info title: n.a. name: n.a. surname: n.a. function: n.a. email: n.a. telephone: n.a. fax: n.a.	UK (CAMBRIDGE)	participant	504˙057.00
14	ERASMUS UNIVERSITEIT ROTTERDAM ERASMUS UNIVERSITEIT ROTTERDAM Organization address address: BURGEMEESTER OUDLAAN 50 city: ROTTERDAM postcode: 3062 PA website: www.eur.nl contact info title: n.a. name: n.a. surname: n.a. function: n.a. email: n.a. telephone: n.a. fax: n.a.	NL (ROTTERDAM)	participant	438˙516.00
15	CIVIC CONSULTING GMBH CIVIC CONSULTING GMBH Organization address address: POTSDAMER STRASSE 150 city: BERLIN postcode: 10783 website: n.a. contact info title: n.a. name: n.a. surname: n.a. function: n.a. email: n.a. telephone: n.a. fax: n.a.	DE (BERLIN)	participant	434˙531.00
16	ALMA MATER STUDIORUM - UNIVERSITA DI BOLOGNA ALMA MATER STUDIORUM - UNIVERSITA DI BOLOGNA Organization address address: VIA ZAMBONI 33 city: BOLOGNA postcode: 40126 website: www.unibo.it contact info title: n.a. name: n.a. surname: n.a. function: n.a. email: n.a. telephone: n.a. fax: n.a.	IT (BOLOGNA)	participant	434˙181.00
17	FONDATION MERIEUX FONDATION MERIEUX Organization address address: RUE BOURGELAT 17 city: LYON postcode: 69227 website: http://www.fondation-merieux.org contact info title: n.a. name: n.a. surname: n.a. function: n.a. email: n.a. telephone: n.a. fax: n.a.	FR (LYON)	participant	428˙830.00
18	RESPONSIBLE TECHNOLOGY RESPONSIBLE TECHNOLOGY Organization address address: Rue de la Chaussée d'Antin 12 city: PARIS postcode: 75009 website: n.a. contact info title: n.a. name: n.a. surname: n.a. function: n.a. email: n.a. telephone: n.a. fax: n.a.	FR (PARIS)	participant	411˙387.00
19	LEIBNIZ-INSTITUT DSMZ-DEUTSCHE SAMMLUNG VON MIKROORGANISMEN UND ZELLKULTUREN GMBH LEIBNIZ-INSTITUT DSMZ-DEUTSCHE SAMMLUNG VON MIKROORGANISMEN UND ZELLKULTUREN GMBH Organization address address: INHOFFENSTRASSE 7B city: BRAUNSCHWEIG postcode: 38124 website: www.dsmz.de contact info title: n.a. name: n.a. surname: n.a. function: n.a. email: n.a. telephone: n.a. fax: n.a.	DE (BRAUNSCHWEIG)	participant	403˙770.00
20	STIFTUNG TIERAERZTLICHE HOCHSCHULE HANNOVER STIFTUNG TIERAERZTLICHE HOCHSCHULE HANNOVER Organization address address: BUNTEWEG 2 city: HANNOVER postcode: 30559 website: www.tiho-hannover.de contact info title: n.a. name: n.a. surname: n.a. function: n.a. email: n.a. telephone: n.a. fax: n.a.	DE (HANNOVER)	participant	403˙750.00
21	WIGNER FIZIKAI KUTATOKOZPONT WIGNER FIZIKAI KUTATOKOZPONT Organization address address: Konkoly Thege Miklos ut 29-33 city: Budapest postcode: 1121 website: www.wigner.mta.hu contact info title: n.a. name: n.a. surname: n.a. function: n.a. email: n.a. telephone: n.a. fax: n.a.	HU (Budapest)	participant	403˙750.00
22	UNIVERSITEIT ANTWERPEN UNIVERSITEIT ANTWERPEN Organization address address: PRINSSTRAAT 13 city: ANTWERPEN postcode: 2000 website: www.ua.ac.be contact info title: n.a. name: n.a. surname: n.a. function: n.a. email: n.a. telephone: n.a. fax: n.a.	BE (ANTWERPEN)	participant	402˙500.00
23	INSTITUT FRANCAIS DE RECHERCHE POUR L'EXPLOITATION DE LA MER INSTITUT FRANCAIS DE RECHERCHE POUR L'EXPLOITATION DE LA MER Organization address address: 1625 ROUTE DE SAINTE ANNE ZONE INDUSTRIELLE DE LA POINTE DU DIABLE city: PLOUZANE postcode: 29280 website: http://www.ifremer.fr contact info title: n.a. name: n.a. surname: n.a. function: n.a. email: n.a. telephone: n.a. fax: n.a.	FR (PLOUZANE)	participant	401˙807.00
24	UNIVERSIDAD DE CASTILLA - LA MANCHA UNIVERSIDAD DE CASTILLA - LA MANCHA Organization address address: CALLE ALTAGRACIA 50 city: CIUDAD REAL postcode: 13071 website: www.uclm.es contact info title: n.a. name: n.a. surname: n.a. function: n.a. email: n.a. telephone: n.a. fax: n.a.	ES (CIUDAD REAL)	participant	400˙750.00
25	ARISTOTELIO PANEPISTIMIO THESSALONIKIS ARISTOTELIO PANEPISTIMIO THESSALONIKIS Organization address address: KEDEA BUILDING, TRITIS SEPTEMVRIOU, ARISTOTLE UNIV CAMPUS city: THESSALONIKI postcode: 54636 website: www.auth.gr contact info title: n.a. name: n.a. surname: n.a. function: n.a. email: n.a. telephone: n.a. fax: n.a.	EL (THESSALONIKI)	participant	353˙750.00
26	ARTEMIS BIO-SUPPORT B.V. ARTEMIS BIO-SUPPORT B.V. Organization address address: MOLENGRAAFFSINGEL 10 city: DELFT postcode: 2629 JD website: www.artemisonehealth.com contact info title: n.a. name: n.a. surname: n.a. function: n.a. email: n.a. telephone: n.a. fax: n.a.	NL (DELFT)	participant	306˙250.00
27	CHARITE - UNIVERSITAETSMEDIZIN BERLIN CHARITE - UNIVERSITAETSMEDIZIN BERLIN Organization address address: Chariteplatz 1 city: BERLIN postcode: 10117 website: www.charite.de contact info title: n.a. name: n.a. surname: n.a. function: n.a. email: n.a. telephone: n.a. fax: n.a.	DE (BERLIN)	participant	231˙583.00
28	GENOME RESEARCH LIMITED GENOME RESEARCH LIMITED Organization address address: THE GIBBS BUILDING, EUSTON ROAD 215 city: LONDON postcode: NW1 2BE website: http://www.sanger.ac.uk contact info title: n.a. name: n.a. surname: n.a. function: n.a. email: n.a. telephone: n.a. fax: n.a.	UK (LONDON)	participant	200˙000.00
29	UNIVERSITATSKLINIKUM BONN UNIVERSITATSKLINIKUM BONN Organization address address: VENUSBERG-CAMPUS 1 city: BONN postcode: 53127 website: www.ukb.uni-bonn.de contact info title: n.a. name: n.a. surname: n.a. function: n.a. email: n.a. telephone: n.a. fax: n.a.	DE (BONN)	participant	172˙675.00
30	CIVIC CONSULTING ALLEWELDT & KARA GBR CIVIC CONSULTING ALLEWELDT & KARA GBR Organization address address: POSTDAMER STRASSE 150 city: Berlin postcode: 10783 website: n.a. contact info title: n.a. name: n.a. surname: n.a. function: n.a. email: n.a. telephone: n.a. fax: n.a.	DE (Berlin)	participant	0.00
31	THE AUSTRALIAN NATIONAL UNIVERSITY THE AUSTRALIAN NATIONAL UNIVERSITY Organization address address: LIVERSIDGE STREET 1 BUILDING 67C city: CANBERRA postcode: 200 website: http://researchservices.anu.edu.au/ contact info title: n.a. name: n.a. surname: n.a. function: n.a. email: n.a. telephone: n.a. fax: n.a.	AU (CANBERRA)	participant	0.00

Map

Project objective

COMPARE aims to harness the rapid advances in molecular technology to improve identification and mitigation of emerging infectious diseases and foodborne outbreaks. To this purpose COMPARE will establish a “One serves all” analytical framework and data exchange platform that will allow real time analysis and interpretation of sequence-based pathogen data in combination with associated data (e.g. clinical, epidemiological data) in an integrated inter-sectorial, interdisciplinary, international, “one health” approach. The framework will link research, clinical and public health organisations active in human health, animal health, and food safety in Europe and beyond, to develop (i) integrated risk assessment and risk based collection of samples and data, (ii) harmonised workflows for generating comparable sequence and associated data, (iii) state-of-the-art analytical workflows and tools for generating actionable information for support of patient diagnosis, treatment, outbreak detection and -investigation and (iv) risk communication tools.

The analytical workflows will be linked to a flexible, scalable and open-source data- and information platform supporting rapid sharing, interrogation and analysis of sequence-based pathogen data in combination with other associated data. The system will be linked to existing and future complementary systems, networks and databases such as those used by ECDC, NCBI and EFSA. The functionalities of the system will be tested and fine tuned through underpinning research studies on priority pathogens covering healthcare-associated infections, food-borne disease, and (zoonotic) (re-) emerging diseases with epidemic or pandemic potential. Throughout the project, extensive consultations with future users, studies into the barriers to open data sharing, dissemination and training activities and studies on the cost-effectiveness of the system will support future sustainable user uptake.

Deliverables

List of deliverables.
Data analysis pipeline	Other	2020-04-25 06:39:05
Analytical workflow for clinical diagnostic application	Other	2020-04-25 06:39:05
Prediction algorithm AMR markers	Documents, reports	2020-04-25 06:39:05
Public website	Websites, patent fillings, videos etc.	2020-04-25 06:39:05
Sequencing workflow	Documents, reports	2020-04-25 06:39:05
Methodologies report	Documents, reports	2020-04-25 06:39:05
Automated tools for rapid assessment of key transmission parameters	Other	2020-04-25 06:39:05
Leaflet and templates	Websites, patent fillings, videos etc.	2020-04-25 06:39:05
Matrix-dependent sample handling protocols	Documents, reports	2020-04-25 06:39:05
Phylogenetic and phylogeographic tools	Other	2020-04-25 06:39:05
CE Framework	Other	2020-04-25 06:39:05
Standard protocol sample processing	Documents, reports	2020-04-25 06:39:05
Algorithm for detection of informative (sub)types	Documents, reports	2020-04-25 06:39:05
Risk based surveillance plans, sampling algorithms and protocols	Documents, reports	2019-10-15 13:18:33
Validated RA model for NGS data	Other	2019-10-15 13:18:15
Tools for rapid sequence based detection of strain specific clusters	Other	2019-10-15 13:18:32
Analytical workflow	Other	2019-10-15 13:18:09
Generic workflow engine	Other	2019-10-15 13:18:07
Methods for prediction of pathogen phenotype from genotype)	Other	2019-10-15 13:18:20
Generic RA framework	Other	2019-10-15 13:17:30
Case study cost-effectiveness report	Documents, reports	2019-10-15 13:18:03
Paper on methodology and results of estimating the value of safety	Documents, reports	2019-10-15 13:18:06

Take a look to the deliverables list in detail: detailed list of COMPARE deliverables.

Publications

List of publications.
year	authors and title	journal	last update
2020	Anna Papa, Sandra Gewehr, Katerina Tsioka, Stella Kalaitzopoulou, Styliani Pappa, Spiros Mourelatos Detection of flaviviruses and alphaviruses in mosquitoes in Central Macedonia, Greece, 2018 published pages: 105278, ISSN: 0001-706X, DOI: 10.1016/j.actatropica.2019.105278	Acta Tropica 202	2020-04-25
2019	Sofia Strubbia, My V. T. Phan, Julien Schaeffer, Marion Koopmans, Matthew Cotten, FranÃ§oise S. Le Guyader Characterization of Norovirus and Other Human Enteric Viruses in Sewage and Stool Samples Through Next-Generation Sequencing published pages: 400-409, ISSN: 1867-0334, DOI: 10.1007/s12560-019-09402-3	Food and Environmental Virology 11/4	2020-04-25
2020	D. Aytan-Aktug, P. T. L. C. Clausen, V. Bortolaia, F. M. Aarestrup, O. Lund Prediction of Acquired Antimicrobial Resistance for Multiple Bacterial Species Using Neural Networks published pages: , ISSN: 2379-5077, DOI: 10.1128/msystems.00774-19	mSystems 5/1	2020-04-25
2020	Johanne Ahrenfeldt, Madina Waisi, Isabella C. Loft, Philip T. L. C. Clausen, Rosa AllesÃ¸e, Judit Szarvas, Rene S. Hendriksen, Frank M. Aarestrup, Ole Lund Metaphylogenetic analysis of global sewage reveals that bacterial strains associated with human disease show less degree of geographic clustering published pages: , ISSN: 2045-2322, DOI: 10.1038/s41598-020-59292-w	Scientific Reports 10/1	2020-04-25
2018	Doreen Muth, Victor Max Corman, Hanna Roth, Tabea Binger, Ronald Dijkman, Lina Theresa Gottula, Florian Gloza-Rausch, Andrea Balboni, Mara Battilani, Danijela RihtariÄ, Ivan Toplak, RamÃ³n Seage Ameneiros, Alexander Pfeifer, Volker Thiel, Jan Felix Drexler, Marcel Alexander MÃ¼ller, Christian Drosten Attenuation of replication by a 29 nucleotide deletion in SARS-coronavirus acquired during the early stages of human-to-human transmission published pages: , ISSN: 2045-2322, DOI: 10.1038/s41598-018-33487-8	Scientific Reports 8/1	2020-04-25
2019	Sofia Strubbia, Julien Schaeffer, Bas B. Oude Munnink, Alban Besnard, My V. T. Phan, David F. Nieuwenhuijse, Miranda de Graaf, Claudia M. E. Schapendonk, Candice Wacrenier, Matthew Cotten, Marion P. G. Koopmans, FranÃ§oise S. Le Guyader Metavirome Sequencing to Evaluate Norovirus Diversity in Sewage and Related Bioaccumulated Oysters published pages: , ISSN: 1664-302X, DOI: 10.3389/fmicb.2019.02394	Frontiers in Microbiology 10	2020-04-25
2019	Katerina Tsergouli, Theodoros Karampatakis, Anna-Bettina Haidich, Symeon Metallidis, Anna Papa Nosocomial infections caused by Crimean-Congo haemorrhagic fever virus published pages: , ISSN: 0195-6701, DOI: 10.1016/j.jhin.2019.12.001	Journal of Hospital Infection	2020-04-25
2018	Alessandra De Cesare, Antonio Parisi, Alex Lucchi, Loredana Capozzi, Angela Bianco, Frederique Pasquali, Gerardo Manfreda Microbiota analysis and microbiological hazard assessment in poultry carcasses from conventional and antibiotic free farms published pages: , ISSN: 2239-7132, DOI: 10.4081/ijfs.2018.7706	Italian Journal of Food Safety 7/4	2020-04-25
2019	Sandra DÃaz-SÃ¡nchez, AgustÃn Estrada-PeÃ±a, Alejandro Cabezas-Cruz, JosÃ© de la Fuente Evolutionary Insights into the Tick Hologenome published pages: 725-737, ISSN: 1471-4922, DOI: 10.1016/j.pt.2019.06.014	Trends in Parasitology 35/9	2020-04-25
2019	Nicolas Radomski, Sabrina Cadel-Six, Emeline Cherchame, Arnaud Felten, Pauline Barbet, Federica Palma, Ludovic Mallet, Simon Le Hello, FranÃ§ois-Xavier Weill, Laurent Guillier, Michel-Yves Mistou A Simple and Robust Statistical Method to Define Genetic Relatedness of Samples Related to Outbreaks at the Genomic Scale â€“ Application to Retrospective Salmonella Foodborne Outbreak Investigations published pages: , ISSN: 1664-302X, DOI: 10.3389/fmicb.2019.02413	Frontiers in Microbiology 10	2020-04-25
2019	Rene S. Hendriksen, Oksana Lukjancenko, Patrick Munk, Mathis H. HjelmsÃ¸, Jennifer R. Verani, Eric Ngâ€™eno, Godfrey Bigogo, Samuel Kiplangat, TraorÃ© Oumar, Lasse Bergmark, Timo RÃ¶der, John C. Neatherlin, Onyango Clayton, Tine Hald, Susanne Karlsmose, SÃ¼nje J. Pamp, Barry Fields, Joel M. Montgomery, Frank M. Aarestrup Pathogen surveillance in the informal settlement, Kibera, Kenya, using a metagenomics approach published pages: e0222531, ISSN: 1932-6203, DOI: 10.1371/journal.pone.0222531	PLOS ONE 14/10	2020-04-25
2019	Nicholas Costa Barroso Lima, Arif M. Tanmoy, Emilie Westeel, Luiz Gonzaga Paula de Almeida, Alain Rajoharison, Maksuda Islam, Hubert P. Endtz, Samir K. Saha, Ana Tereza Ribeiro de Vasconcelos, Florence Komurian-Pradel Analysis of isolates from Bangladesh highlights multiple ways to carry resistance genes in Salmonella Typhi published pages: , ISSN: 1471-2164, DOI: 10.1186/s12864-019-5916-6	BMC Genomics 20/1	2020-04-25
2019	Serafeim C. Chaintoutis, Anna Papa, Danai Pervanidou, Chrysostomos I. Dovas Evolutionary dynamics of lineage 2 West Nile virus in Europe, 2004â€“2018: Phylogeny, selection pressure and phylogeography published pages: 106617, ISSN: 1055-7903, DOI: 10.1016/j.ympev.2019.106617	Molecular Phylogenetics and Evolution 141	2020-04-25
2019	Nanna Munck, James Smith, John Bates, Kathryn Glass, Tine Hald, Martyn D. Kirk Source Attribution of Salmonella in Macadamia Nuts to Animal and Environmental Reservoirs in Queensland, Australia published pages: , ISSN: 1535-3141, DOI: 10.1089/fpd.2019.2706	Foodborne Pathogens and Disease	2020-04-25
2019	Sarah Fourour, Pierrick Lucas, Fabrice Touzain, VÃ©ronique Tocqueville, Anne V. Gautier-Bouchardon, Isabelle Kempf, Corinne Marois-CrÃ©han Genomic polymorphism of Mycoplasma flocculare revealed by a newly developed multilocus sequence typing scheme published pages: 108422, ISSN: 0378-1135, DOI: 10.1016/j.vetmic.2019.108422	Veterinary Microbiology 237	2020-04-25
2019	Sherif A El-Kafrawy, Victor M Corman, Ahmed M Tolah, Saad B Al Masaudi, Ahmed M Hassan, Marcel A MÃ¼ller, Tobias Bleicker, Steve M Harakeh, Abdulrahman A Alzahrani, Ghaleb A Alsaaidi, Abdulaziz N Alagili, Anwar M Hashem, Alimuddin Zumla, Christian Drosten, Esam I Azhar Enzootic patterns of Middle East respiratory syndrome coronavirus in imported African and local Arabian dromedary camels: a prospective genomic study published pages: e521-e528, ISSN: 2542-5196, DOI: 10.1016/s2542-5196(19)30243-8	The Lancet Planetary Health 3/12	2020-04-25
2019	Clara Amid, Nima Pakseresht, Nicole Silvester, Suran Jayathilaka, Ole Lund, Lukasz D Dynovski, BÃ¡lint Ã Pataki, DÃ¡vid Visontai, Basil Britto Xavier, Blaise T F Alako, Ariane Belka, Jose L B Cisneros, Matthew Cotten, George B Haringhuizen, Peter W Harrison, Dirk HÃ¶per, Sam Holt, Camilla Hundahl, Abdulrahman Hussein, Rolf S Kaas, Xin Liu, Rasko Leinonen, Surbhi Malhotra-Kumar, David F Nieuwenhui The COMPARE Data Hubs published pages: , ISSN: 1758-0463, DOI: 10.1093/database/baz136	Database 2019	2020-04-25
2019	Panagiotis Papadopoulos, Apostolos S. Angelidis, Theofilos Papadopoulos, Charalampos Kotzamanidis, Antonios Zdragas, Anna Papa, George Filioussis, Daniel Sergelidis Staphylococcus aureus and methicillin-resistant S. aureus (MRSA) in bulk tank milk, livestock and dairy-farm personnel in north-central and north-eastern Greece: Prevalence, characterization and genetic relatedness published pages: 103249, ISSN: 0740-0020, DOI: 10.1016/j.fm.2019.103249	Food Microbiology 84	2020-04-25
2019	F. Pasquali, I. Do Valle, F. Palma, D. Remondini, G. Manfreda, G. Castellani, R.S. Hendriksen, A. De Cesare Application of different DNA extraction procedures, library preparation protocols and sequencing platforms: impact on sequencing results published pages: e02745, ISSN: 2405-8440, DOI: 10.1016/j.heliyon.2019.e02745	Heliyon 5/10	2020-04-25
2017	Anna Papa, Anastasia Kontana, Katerina Tsioka, Ilias Chaligiannis, Smaragda Sotiraki Molecular detection of Crimean-Congo hemorrhagic fever virus in ticks, Greece, 2012â€“2014 published pages: 3057-3063, ISSN: 0932-0113, DOI: 10.1007/s00436-017-5616-6	Parasitology Research 116/11	2020-04-25
2019	JoaquÃn Vicente, Marco Apollonio, Jose A. Blanco-Aguiar, Tomasz Borowik, Francesca Brivio, Jim Casaer, Simon Croft, GÃ¶ran Ericsson, Ezio Ferroglio, Dolores Gavier-Widen, Christian GortÃ¡zar, Patrick A. Jansen, Oliver Keuling, RafaÅ‚ Kowalczyk, Karolina Petrovic, Radim Plhal, Tomasz PodgÃ³rski, Marie Sange, Massimo Scandura, Krzysztof Schmidt, Graham C. Smith, Ramon Soriguer, Hans-Hermann Thulke, Science-based wildlife disease response published pages: 943.2-944, ISSN: 0036-8075, DOI: 10.1126/science.aax4310	Science 364/6444	2020-04-25
2018	Jasmine Coppens, Basil Britto Xavier, Lavanya Vanjari, Sarah De Backer, Christine Lammens, Lakshmi Vemu, Herman Goossens, Surbhi Malhotra-Kumar Novel composite SCCmec type III element in ST239 MRSA isolated from an Indian hospital published pages: , ISSN: 0305-7453, DOI: 10.1093/JAC/DKY399	Journal of Antimicrobial Chemotherapy	2020-04-25
2019	Claudia Wylezich, Ariane Belka, Dennis Hanke, Martin Beer, Sandra Blome, Dirk HÃ¶per Metagenomics for broad and improved parasite detection: a proof-of-concept study using swine faecal samples published pages: 769-777, ISSN: 0020-7519, DOI: 10.1016/j.ijpara.2019.04.007	International Journal for Parasitology 49/10	2020-04-25
2019	Wendy K. Jo, Cornelis van Elk, Marco van de Bildt, Peter van Run, Monique Petry, Sonja T. Jesse, Klaus Jung, Martin Ludlow, Thijs Kuiken, Albert Osterhaus An evolutionary divergent pestivirus lacking the N pro gene systemically infects a whale species published pages: 1383-1392, ISSN: 2222-1751, DOI: 10.1080/22221751.2019.1664940	Emerging Microbes & Infections 8/1	2020-04-25
2019	Yann SÃ©vellec, Arnaud Felten, Nicolas Radomski, Sophie Granier, Simon Le Hello, Liljana Petrovska, Michel-Yves Mistou, Sabrina Cadel-Six Genetic Diversity of Salmonella Derby from the Poultry Sector in Europe published pages: 46, ISSN: 2076-0817, DOI: 10.3390/pathogens8020046	Pathogens 8/2	2020-04-25
2019	Meryl Vila Nova, KÃ©vin Durimel, KÃ©vin La, Arnaud Felten, Philippe BessiÃ¨res, Michel-Yves Mistou, Mahendra Mariadassou, Nicolas Radomski Genetic and metabolic signatures ofÂ Salmonella enterica subsp. entericaÂ associated with animal sources at the pangenomic scale published pages: , ISSN: 1471-2164, DOI: 10.1186/s12864-019-6188-x	BMC Genomics 20/1	2020-04-25
2019	Robert E. Weber, Michael Pietsch, Andre FrÃ¼hauf, Yvonne Pfeifer, Maria Martin, Dirk Luft, SÃ¶ren Gatermann, Niels Pfennigwerth, Martin Kaase, Guido Werner, Stephan Fuchs IS26-Mediated Transfer of blaNDMâ€“1 as the Main Route of Resistance Transmission During a Polyclonal, Multispecies Outbreak in a German Hospital published pages: , ISSN: 1664-302X, DOI: 10.3389/fmicb.2019.02817	Frontiers in Microbiology 10	2020-04-25
2019	AmÃ©lie Chastagner, Vincent Enouf, David Peroz, SÃ©verine HervÃ©, Pierrick Lucas, StÃ©phane QuÃ©guiner, StÃ©phane Gorin, VÃ©ronique Beven, Sylvie Behillil, Philippe Leneveu, Emmanuel Garin, Yannick Blanchard, Sylvie van der Werf, GaÃ«lle Simon Bidirectional Humanâ€“Swine Transmission of Seasonal Influenza A(H1N1)pdm09 Virus in Pig Herd, France, 2018 published pages: 1940-1943, ISSN: 1080-6040, DOI: 10.3201/eid2510.190068	Emerging Infectious Diseases 25/10	2020-04-25
2019	Jan Forth, Leonie Forth, Jacqueline King, Oxana Groza, Alexandra HÃ¼bner, Ann Olesen, Dirk HÃ¶per, Linda Dixon, Christopher Netherton, Thomas Rasmussen, Sandra Blome, Anne Pohlmann, Martin Beer A Deep-Sequencing Workflow for the Fast and Efficient Generation of High-Quality African Swine Fever Virus Whole-Genome Sequences published pages: 846, ISSN: 1999-4915, DOI: 10.3390/v11090846	Viruses 11/9	2020-04-25
2019	Anne Pohlmann, Donata Hoffmann, Christian Grund, Susanne Koethe, Daniela HÃ¼ssy, Simone M. Meier, Jacqueline King, Jan SchinkÃ¶the, Reiner Ulrich, Timm Harder, Martin Beer Genetic Characterization and Zoonotic Potential of Highly Pathogenic Avian Influenza Virus A(H5N6/H5N5), Germany, 2017â€“2018 published pages: 1973-1976, ISSN: 1080-6040, DOI: 10.3201/eid2510.181931	Emerging Infectious Diseases 25/10	2020-04-25
2019	Anna CÃ¤cilia Ingham, Katrine Kielsen, Malene Skovsted Cilieborg, Ole Lund, Susan Holmes, Frank M. Aarestrup, Klaus Gottlob MÃ¼ller, SÃ¼nje Johanna Pamp Specific gut microbiome members are associated with distinct immune markers in pediatric allogeneic hematopoietic stem cell transplantation published pages: , ISSN: 2049-2618, DOI: 10.1186/s40168-019-0745-z	Microbiome 7/1	2020-04-25
2019	Julie Eclercy, Patricia Renson, Arnaud Lebret, Edouard Hirchaud, ValÃ©rie Normand, Mathieu Andraud, FrÃ©dÃ©ric Paboeuf, Yannick Blanchard, Nicolas Rose, Olivier Bourry A Field Recombinant Strain Derived from Two Type 1 Porcine Reproductive and Respiratory Syndrome Virus (PRRSV-1) Modified Live Vaccines Shows Increased Viremia and Transmission in SPF Pigs published pages: 296, ISSN: 1999-4915, DOI: 10.3390/v11030296	Viruses 11/3	2020-04-25
2020	Rachel A. Taylor, Roberto Condoleo, Robin R. L. Simons, Paul Gale, Louise A. Kelly, Emma L. Snary The Risk of Infection by African Swine Fever Virus in European Swine Through Boar Movement and Legal Trade of Pigs and Pig Meat published pages: , ISSN: 2297-1769, DOI: 10.3389/fvets.2019.00486	Frontiers in Veterinary Science 6	2020-04-25
2019	Danielle J. Ingle, Satheesh Nair, Hassan Hartman, Philip M. Ashton, Zoe A. Dyson, Martin Day, Joanne Freedman, Marie A. Chattaway, Kathryn E. Holt, Timothy J. Dallman Informal genomic surveillance of regional distribution of Salmonella Typhi genotypes and antimicrobial resistance via returning travellers published pages: e0007620, ISSN: 1935-2727, DOI: 10.1371/journal.pntd.0007620	PLOS Neglected Tropical Diseases 13/9	2020-04-25
2019	AmÃ©lie Chastagner, Emilie Bonin, Christelle Fablet, StÃ©phane QuÃ©guiner, Edouard Hirchaud, Pierrick Lucas, StÃ©phane Gorin, Nicolas Barbier, VÃ©ronique BÃ©ven, Emmanuel Garin, Yannick Blanchard, Nicolas Rose, SÃ©verine HervÃ©, GaÃ«lle Simon Virus persistence in pig herds led to successive reassortment events between swine and human influenza A viruses, resulting in the emergence of a novel triple-reassortant swine influenza virus published pages: , ISSN: 1297-9716, DOI: 10.1186/s13567-019-0699-y	Veterinary Research 50/1	2020-04-25
2020	Anita Puranik, Marek J. Slomka, Caroline J. Warren, Saumya S. Thomas, Sahar Mahmood, Alexander M.P. Byrne, Andrew M. Ramsay, Paul Skinner, Samantha Watson, Helen E. Everett, Alejandro NÃºÃ±ez, Ian H. Brown, Sharon M. Brookes Transmission dynamics between infected waterfowl and terrestrial poultry: Differences between the transmission and tropism of H5N8 highly pathogenic avian influenza virus (clade 2.3.4.4a) among ducks, chickens and turkeys published pages: 113-123, ISSN: 0042-6822, DOI: 10.1016/j.virol.2019.10.014	Virology 541	2020-04-25
2019	Robert A. Edwards, Alejandro A. Vega, Holly M. Norman, Maria Ohaeri, Kyle Levi, Elizabeth A. Dinsdale, Ondrej Cinek, Ramy K. Aziz, Katelyn McNair, Jeremy J. Barr, Kyle Bibby, Stan J. J. Brouns, Adrian Cazares, Patrick A. de Jonge, Christelle Desnues, Samuel L. DÃaz MuÃ±oz, Peter C. Fineran, Alexander Kurilshikov, Rob Lavigne, Karla Mazankova, David T. McCarthy, Franklin L. Nobrega, Alejandro Reye Global phylogeography and ancient evolution of the widespread human gut virus crAssphage published pages: , ISSN: 2058-5276, DOI: 10.1038/s41564-019-0494-6	Nature Microbiology	2020-04-25
2019	Orsolya Anna Pipek, Anna Medgyes-HorvÃ¡th, LÃ¡szlÃ³ Dobos, JÃ³zsef StÃ©ger, JÃ¡nos Szalai-Gindl, DÃ¡vid Visontai, Rolf S. Kaas, Marion Koopmans, Rene S. Hendriksen, Frank M. Aarestrup, IstvÃ¡n Csabai Worldwide human mitochondrial haplogroup distribution from urban sewage published pages: , ISSN: 2045-2322, DOI: 10.1038/s41598-019-48093-5	Scientific Reports 9/1	2020-04-25
2016	David Polo, Julien Schaeffer, Nelly Fournet, Jean-Claude Le Saux, Sylvain Parnaudeau, Catherine McLeod, FranÃ§oise S. Le Guyader Digital PCR for Quantifying Norovirus in Oysters Implicated in Outbreaks, France published pages: 2189-2191, ISSN: 1080-6040, DOI: 10.3201/eid2212.160841	Emerging Infectious Diseases 22/12	2020-04-25
2017	Charlotte Lempp, Nicole Jungwirth, Miguel L. Grilo, Anja Reckendorf, Arlena Ulrich, Abbo van Neer, Rogier Bodewes, Vanessa M. Pfankuche, Christian Bauer, Albert D. M. E. Osterhaus, Wolfgang BaumgÃ¤rtner, Ursula Siebert Pathological findings in the red fox (Vulpes vulpes), stone marten (Martes foina) and raccoon dog (Nyctereutes procyonoides), with special emphasis on infectious and zoonotic agents in Northern Germany published pages: e0175469, ISSN: 1932-6203, DOI: 10.1371/journal.pone.0175469	PLOS ONE 12/4	2020-04-25
2017	Dennis Hanke, Anne Pohlmann, Carola Sauter-Louis, Dirk HÃ¶per, Julia Stadler, Mathias Ritzmann, Adi Steinrigl, Bernd-Andreas Schwarz, Valerij Akimkin, Robert Fux, Sandra Blome, Martin Beer Porcine Epidemic Diarrhea in Europe: In-Detail Analyses of Disease Dynamics and Molecular Epidemiology published pages: 177, ISSN: 1999-4915, DOI: 10.3390/v9070177	Viruses 9/7	2020-04-25
2016	Pieter L A Fraaij, Enno D Wildschut, Robert J Houmes, Corien M Swaan, Christian J Hoebe, H C C de Jonge, Paulien Tolsma, Isme de Kleer, Suzan D Pas, Bas B Oude Munnink, My V T Phan, Theo M Bestebroer, R Shanty Roosenhoff, Jeroen J A van Kampen, Matthew Cotten, Nancy Beerens, Ron A M Fouchier, Johannes H van den Kerkhof, Aura Timen, Marion P Koopmans Severe acute respiratory infection caused by swine influenza virus in a child necessitating extracorporeal membrane oxygenation (ECMO), the Netherlands, October 2016 published pages: , ISSN: 1025-496X, DOI: 10.2807/1560-7917.ES.2016.21.48.30416	Eurosurveillance 21/48	2020-04-25
2016	Laura Becker, Matthias Steglich, Stephan Fuchs, Guido Werner, Ulrich NÃ¼bel Comparison of six commercial kits to extract bacterial chromosome and plasmid DNA for MiSeq sequencing published pages: 28063, ISSN: 2045-2322, DOI: 10.1038/srep28063	Scientific Reports 6	2020-04-25
2015	JosÃ© de la Fuente, Iratxe DÃez-Delgado, Marinela Contreras, JoaquÃn Vicente, Alejandro Cabezas-Cruz, Raquel Tobes, Marina Manrique, Vladimir LÃ³pez, Beatriz Romero, Javier Bezos, Lucas Dominguez, Iker A. Sevilla, Joseba M. Garrido, RamÃ³n Juste, Guillermo Madico, Edward Jones-LÃ³pez, Christian Gortazar Comparative Genomics of Field Isolates of Mycobacterium bovis and M. caprae Provides Evidence for Possible Correlates with Bacterial Viability and Virulence published pages: e0004232, ISSN: 1935-2735, DOI: 10.1371/journal.pntd.0004232	PLOS Neglected Tropical Diseases 9/11	2020-04-25
2016	B. B. Xavier, C. Lammens, P. Butaye, H. Goossens, S. Malhotra-Kumar Complete sequence of an IncFII plasmid harbouring the colistin resistance gene mcr-1 isolated from Belgian pig farms published pages: dkw191, ISSN: 0305-7453, DOI: 10.1093/jac/dkw191	Journal of Antimicrobial Chemotherapy	2020-04-25
2018	Sander Herfst, Chris K. P. Mok, Judith M. A. van den Brand, Stefan van der Vliet, Miruna E. Rosu, Monique I. Spronken, Zifeng Yang, Dennis de Meulder, Pascal Lexmond, Theo M. Bestebroer, J. S. Malik Peiris, Ron A. M. Fouchier, Mathilde Richard Human Clade 2.3.4.4 A/H5N6 Influenza Virus Lacks Mammalian Adaptation Markers and Does Not Transmit via the Airborne Route between Ferrets published pages: e00405-17, ISSN: 2379-5042, DOI: 10.1128/mSphere.00405-17	mSphere 3/1	2020-04-25
2018	Judith M. A. van den Brand, Josanne H. Verhagen, Edwin J. B. Veldhuis Kroeze, Marco W. G. van de Bildt, Rogier Bodewes, Sander Herfst, Mathilde Richard, Pascal Lexmond, Theo M. Bestebroer, Ron A. M. Fouchier, Thijs Kuiken Wild ducks excrete highly pathogenic avian influenza virus H5N8 (2014â€“2015) without clinical or pathological evidence of disease published pages: , ISSN: 2222-1751, DOI: 10.1038/s41426-018-0070-9	Emerging Microbes & Infections 7/1	2020-04-25
2016	Martin Christen FrÃ¸lund Thomsen, Johanne Ahrenfeldt, Jose Luis Bellod Cisneros, Vanessa Jurtz, Mette Voldby Larsen, Henrik Hasman, Frank MÃ¸ller Aarestrup, Ole Lund A Bacterial Analysis Platform: An Integrated System for Analysing Bacterial Whole Genome Sequencing Data for Clinical Diagnostics and Surveillance published pages: e0157718, ISSN: 1932-6203, DOI: 10.1371/journal.pone.0157718	PLOS ONE 11/6	2020-04-25
2016	Judith M. A. van den Brand, Peter Wohlsein, Sander Herfst, Rogier Bodewes, Vanessa M. Pfankuche, Marco W. G. van de Bildt, Frauke Seehusen, Christina Puff, Mathilde Richard, Ursula Siebert, Kristina Lehnert, Theo Bestebroer, Pascal Lexmond, Ron A. M. Fouchier, Ellen Prenger-Berninghoff, Werner Herbst, Marion Koopmans, Albert D. M. E. Osterhaus, Thijs Kuiken, Wolfgang BaumgÃ¤rtner Influenza A (H10N7) Virus Causes Respiratory Tract Disease in Harbor Seals and Ferrets published pages: e0159625, ISSN: 1932-6203, DOI: 10.1371/journal.pone.0159625	PLOS ONE 11/7	2020-04-25
2015	Mathilde Richard, Sander Herfst, Judith M. A. van den Brand, Pascal Lexmond, Theo M. Bestebroer, Guus F. Rimmelzwaan, Marion Koopmans, Thijs Kuiken, Ron A. M. Fouchier Low Virulence and Lack of Airborne Transmission of the Dutch Highly Pathogenic Avian Influenza Virus H5N8 in Ferrets published pages: e0129827, ISSN: 1932-6203, DOI: 10.1371/journal.pone.0129827	PLOS ONE 10/6	2020-04-25
2016	Martin Ludlow, Jeroen Kortekaas, Christiane Herden, Bernd Hoffmann, Dennis Tappe, Corinna Trebst, Diane E. Griffin, Hannah E. Brindle, Tom Solomon, Alan S. Brown, Debby van Riel, Katja C. Wolthers, Dasja Pajkrt, Peter Wohlsein, Byron E. E. Martina, Wolfgang BaumgÃ¤rtner, Georges M. Verjans, Albert D. M. E. Osterhaus Neurotropic virus infections as the cause of immediate and delayed neuropathology published pages: 159-184, ISSN: 0001-6322, DOI: 10.1007/s00401-015-1511-3	Acta Neuropathologica 131/2	2020-04-25
2017	Marjan Wouthuyzen-Bakker, Marjolein Knoester, Aad P van den Berg, Corine H GeurtsvanKessel, Marion PG Koopmans, Coretta Van Leer-Buter, Bob Oude Velthuis, Suzan D Pas, Wilhelmina LM Ruijs, Jonas Schmidt-Chanasit, Stephen GS Vreden, Tjip S van der Werf, Chantal BEM Reusken, Wouter FW Bierman Yellow fever in a traveller returning from Suriname to the Netherlands, March 2017 published pages: , ISSN: 1025-496X, DOI: 10.2807/1560-7917.ES.2017.22.11.30488	Eurosurveillance 22/11	2020-04-25
2018	Chutchai Piewbang, Wendy K. Jo, Christina Puff, Erhard van der Vries, Sawang Kesdangsakonwut, Anudep Rungsipipat, Jochen Kruppa, Klaus Jung, Wolfgang BaumgÃ¤rtner, Somporn Techangamsuwan, Martin Ludlow, Albert D. M. E. Osterhaus Novel canine circovirus strains from Thailand: Evidence for genetic recombination published pages: , ISSN: 2045-2322, DOI: 10.1038/s41598-018-25936-1	Scientific Reports 8/1	2020-04-25
2016	Takayuki Miura, SÃ©bastien Lhomme, Jean-Claude Le Saux, Philippe Le Mehaute, Yvonnick Guillois, Elizabeth Couturier, Jacques Izopet, Florence Abranavel, FranÃ§oise S. Le Guyader Detection of Hepatitis E Virus in Sewage After an Outbreak on a French Island published pages: , ISSN: 1867-0334, DOI: 10.1007/s12560-016-9241-9	Food and Environmental Virology	2020-04-25
2018	Sasan Fereidouni, M. Jenckel, A. Seidalina, K. Karamendin, M. Beer, E. Starick, S. Asanova, E. Kasymbekov, M. Sayatov, A. Kydyrmanov Next-generation sequencing of five new avian paramyxoviruses 8 isolates from Kazakhstan indicates a low genetic evolution rate over four decades published pages: 331-336, ISSN: 0304-8608, DOI: 10.1007/s00705-017-3593-9	Archives of Virology 163/2	2020-04-25
2016	Bas B. Oude Munnink, My V. T. Phan, Lia van der Hoek, Paul Kellam, Matthew Cotten Genome Sequences of a Novel Vietnamese Bat Bunyavirus published pages: e01366-16, ISSN: 2169-8287, DOI: 10.1128/genomeA.01366-16	Genome Announcements 4/6	2020-04-25
2016	M.D. HALL, M.E.J. WOOLHOUSE, A. RAMBAUT Using genomics data to reconstruct transmission trees during disease outbreaks published pages: 287-296, ISSN: 0253-1933, DOI: 10.20506/rst.35.1.2433	Revue Scientifique et Technique de l\'OIE 35/1	2020-04-25
2017	Arnaud Felten, Meryl Vila Nova, Kevin Durimel, Laurent Guillier, Michel-Yves Mistou, Nicolas Radomski First gene-ontology enrichment analysis based on bacterial coregenome variants: insights into adaptations of Salmonella serovars to mammalian- and avian-hosts published pages: , ISSN: 1471-2180, DOI: 10.1186/s12866-017-1132-1	BMC Microbiology 17/1	2020-04-25
2016	Vanessa M. Pfankuche, Rogier Bodewes, Kerstin Hahn, Christina Puff, Andreas Beineke, AndrÃ© Habierski, Albert D.M.E. Osterhaus, Wolfgang BaumgÃ¤rtner Porcine Bocavirus Infection Associated with Encephalomyelitis in a Pig, Germany1 published pages: 1310-1312, ISSN: 1080-6040, DOI: 10.3201/eid2207.152049	Emerging Infectious Diseases 22/7	2020-04-25
2017	F. ALLEWELDT, S. KARA, A. OSINSKI, P. VAN BAAL, K. KELLERBORG, F.M. AARESTRUP, M. KOOPMANS Developing a framework to assess the costeffectiveness of COMPARE â€“ a global platform for the exchange of sequence-based pathogen data published pages: 311-322, ISSN: 0253-1933, DOI: 10.20506/rst.36.1.2631	Revue Scientifique et Technique de l\'OIE 36/1	2020-04-25
2018	Anna Papa, Elpida Papadopoulou Acute viral infections of the central nervous system, 2014-2016, Greece published pages: 644-647, ISSN: 0146-6615, DOI: 10.1002/jmv.24997	Journal of Medical Virology 90/4	2020-04-25
2017	Bianca DÃ¶ÃŸelmann, Matthias Willmann, Matthias Steglich, Boyke Bunk, Ulrich NÃ¼bel, Silke Peter, Richard A. Neher Rapid and Consistent Evolution of Colistin Resistance in Extensively Drug-Resistant Pseudomonas aeruginosa during Morbidostat Culture published pages: e00043-17, ISSN: 0066-4804, DOI: 10.1128/AAC.00043-17	Antimicrobial Agents and Chemotherapy 61/9	2020-04-25
2017	Nguyen Vinh Trung, SÃ©bastien Matamoros, Juan J. Carrique-Mas, Nguyen Huu Nghia, Nguyen Thi Nhung, Tran Thi Bich Chieu, Ho Huynh Mai, Willemien van Rooijen, James Campbell, Jaap A. Wagenaar, Anita Hardon, Nguyen Thi Nhu Mai, Thai Quoc Hieu, Guy Thwaites, Menno D. de Jong, Constance Schultsz, Ngo Thi Hoa Zoonotic Transmission of mcr-1 Colistin Resistance Gene from Small-Scale Poultry Farms, Vietnam published pages: 529-532, ISSN: 1080-6040, DOI: 10.3201/eid2303.161553	Emerging Infectious Diseases 23/3	2020-04-25
2018	Carolina dos S. Ribeiro, Martine Y. van Roode, George B. Haringhuizen, Marion P. Koopmans, Eric Claassen, Linda H. M. van de Burgwal How ownership rights over microorganisms affect infectious disease control and innovation: A root-cause analysis of barriers to data sharing as experienced by key stakeholders published pages: e0195885, ISSN: 1932-6203, DOI: 10.1371/journal.pone.0195885	PLOS ONE 13/5	2020-04-25
2017	Kore Schlottau, Maria Jenckel, Judith van den Brand, Christine Fast, Christiane Herden, Dirk HÃ¶per, Timo Homeier-Bachmann, Jens Thielebein, Niels Mensing, Bert Diender, Donata Hoffmann, Rainer G. Ulrich, Thomas C. Mettenleiter, Marion Koopmans, Dennis Tappe, Jonas Schmidt-Chanasit, Chantal B.E.M. Reusken, Martin Beer, Bernd Hoffmann Variegated Squirrel Bornavirus 1 in Squirrels, Germany and the Netherlands published pages: 477-481, ISSN: 1080-6040, DOI: 10.3201/eid2303.161061	Emerging Infectious Diseases 23/3	2020-04-25
2017	A. Melidou, G. Gioula, M. Exindari, E. Ioannou, K. Gkolfinopoulou, T. Georgakopoulou, S. Tsiodras, A. Papa Î™nfluenza A(H3N2) genetic variants in vaccinated patients in northern Greece published pages: 29-32, ISSN: 1386-6532, DOI: 10.1016/j.jcv.2017.07.003	Journal of Clinical Virology 94	2020-04-25
2018	Claudia Wylezich, Anna Papa, Martin Beer, Dirk HÃ¶per A Versatile Sample Processing Workflow for Metagenomic Pathogen Detection published pages: , ISSN: 2045-2322, DOI: 10.1038/s41598-018-31496-1	Scientific Reports 8/1	2020-04-25
2017	Miranda de Graaf, Rogier Bodewes, Cornelis E. van Elk, Marco van de Bildt, Sarah Getu, Georgina I. Aron, Georges M.G.M. Verjans, Albert D.M.E. Osterhaus, Judith M.A. van den Brand, Thijs Kuiken, Marion P.G. Koopmans Norovirus Infection in Harbor Porpoises published pages: 87-91, ISSN: 1080-6040, DOI: 10.3201/eid2301.161081	Emerging Infectious Diseases 23/1	2020-04-25
2017	Florian Pfaffâ€‹, Christoph Schulzeâ€‹, Patricia KÃ¶nigâ€‹, Kati Franzkeâ€‹, Sabine Bockâ€‹, Andreas Hlinakâ€‹, Jens KÃ¤mmerlingâ€‹, Andreas Ochsâ€‹, AndrÃ© SchÃ¼leâ€‹, Thomas C. Mettenleiterâ€‹, Dirk HÃ¶per1â€‹, Martin Beer A novel alphaherpesvirus associated with fatal diseases in banded Penguins published pages: 89-95, ISSN: 0022-1317, DOI: 10.1099/jgv.0.000698	Journal of General Virology 98/1	2020-04-25
2018	Marjolein J. Poen, Theo M. Bestebroer, Oanh Vuong, Rachel D. Scheuer, Henk P. van der Jeugd, Erik Kleyheeg, Dirk Eggink, Pascal Lexmond, Judith M.A. van den Brand, Lineke Begeman, Stefan van der Vliet, Gerhard J.D.M. MÃ¼skens, Frank A. Majoor, Marion P.G. Koopmans, Thijs Kuiken, Ron A.M. Fouchier Local amplification of highly pathogenic avian influenza H5N8 viruses in wild birds in the Netherlands, 2016 to 2017 published pages: , ISSN: 1025-496x, DOI: 10.2807/1560-7917.ES.2018.23.4.17-00449	Eurosurveillance 23/4	2020-04-25
2017	Charles N. Agoti, Patrick K. Munywoki, My V. T. Phan, James R. Otieno, Everlyn Kamau, Anne Bett, Ivy Kombe, George Githinji, Graham F. Medley, Patricia A. Cane, Paul Kellam, Matthew Cotten, D. James Nokes Transmission patterns and evolution of respiratory syncytial virus in a community outbreak identified by genomic analysis published pages: , ISSN: 2057-1577, DOI: 10.1093/ve/vex006	Virus Evolution 3/1	2020-04-25
2015	Kirsty R. Short, Mathilde Richard, Josanne H. Verhagen, Debby van Riel, Eefje J.A. Schrauwen, Judith M.A. van den Brand, Benjamin MÃ¤nz, Rogier Bodewes, Sander Herfst One health, multiple challenges: The inter-species transmission of influenza A virus published pages: 1-13, ISSN: 2352-7714, DOI: 10.1016/j.onehlt.2015.03.001	One Health 1	2020-04-25
2015	Rogier Bodewes, Ana Rubio GarcÃa, Sophie M. Brasseur, Guillermo J. Sanchez Conteras, Marco W. G. van de Bildt, Marion P. G. Koopmans, Albert D. M. E. Osterhaus, Thijs Kuiken Seroprevalence of Antibodies against Seal Influenza A(H10N7) Virus in Harbor Seals and Gray Seals from the Netherlands published pages: e0144899, ISSN: 1932-6203, DOI: 10.1371/journal.pone.0144899	PLOS ONE 10/12	2020-04-25
2015	M. E. J. Woolhouse, A. Rambaut, P. Kellam Lessons from Ebola: Improving infectious disease surveillance to inform outbreak management published pages: 307rv5-307rv5, ISSN: 1946-6234, DOI: 10.1126/scitranslmed.aab0191	Science Translational Medicine 7/307	2020-04-25
2017	Jakko van Ingen, Thomas A Kohl, Katharina Kranzer, Barbara Hasse, Peter M Keller, Anna Katarzyna SzafraÅ„ska, Doris Hillemann, Meera Chand, Peter Werner Schreiber, Rami Sommerstein, Christoph Berger, Michele Genoni, Christian RÃ¼egg, Nicolas Troillet, Andreas F Widmer, SÃ¶ren L Becker, Mathias Herrmann, Tim Eckmanns, Sebastian Haller, Christiane HÃ¶ller, Sylvia B Debast, Maurice J Wolfhagen, Joost Hopman, Jan Kluytmans, Merel Langelaar, Daan W Notermans, Jaap ten Oever, Peter van den Barselaar, Alexander B A Vonk, Margreet C Vos, Nada Ahmed, Timothy Brown, Derrick Crook, Theresa Lamagni, Nick Phin, E Grace Smith, Maria Zambon, Annerose Serr, Tim GÃ¶tting, Winfried Ebner, Alexander ThÃ¼rmer, Christian Utpatel, Cathrin SprÃ¶er, Boyke Bunk, Ulrich NÃ¼bel, Guido V Bloemberg, Erik C BÃ¶ttger, Stefan Niemann, Dirk Wagner, Hugo Sax Global outbreak of severe Mycobacterium chimaera disease after cardiac surgery: a molecular epidemiological study published pages: 1033-1041, ISSN: 1473-3099, DOI: 10.1016/S1473-3099(17)30324-9	The Lancet Infectious Diseases 17/10	2020-04-25
2017	Dirk HÃ¶per, Claudia Wylezich, Martin Beer Loeffler 4.0: Diagnostic Metagenomics published pages: 17-37, ISSN: 0065-3527, DOI: 10.1016/bs.aivir.2017.08.001	Advances in Virus Research volume 99	2020-04-25
2017	Matthias Steglich, Ulrich NÃ¼bel The challenge of detecting indels in bacterial genomes from short-read sequencing data published pages: 11-15, ISSN: 0168-1656, DOI: 10.1016/j.jbiotec.2017.02.026	Journal of Biotechnology 250	2020-04-25
2017	Adriana Cabal, Joaquin Vicente, Julio Alvarez, Jose Angel Barasona, Mariana Boadella, Lucas Dominguez, Christian Gortazar Human influence and biotic homogenization drive the distribution of Escherichia coli virulence genes in natural habitats published pages: e00445, ISSN: 2045-8827, DOI: 10.1002/mbo3.445	MicrobiologyOpen 6/3	2020-04-25
2018	Panagiotis Papadopoulos, Theofilos Papadopoulos, Apostolos S. Angelidis, Evridiki Boukouvala, Antonios Zdragas, Anna Papa, Christos Hadjichristodoulou, Daniel Sergelidis Prevalence of Staphylococcus aureus and of methicillin-resistant S.Â aureus (MRSA) along the production chain of dairy products in north-western Greece published pages: 43-50, ISSN: 0740-0020, DOI: 10.1016/j.fm.2017.07.016	Food Microbiology 69	2020-04-25
2017	Josanne H. Verhagen, Pascal Lexmond, Oanh Vuong, Martin Schutten, Judith Guldemeester, Albert D. M. E. Osterhaus, Armin R. W. Elbers, Roy Slaterus, Menno Hornman, Guus Koch, Ron A. M. Fouchier Discordant detection of avian influenza virus subtypes in time and space between poultry and wild birds; Towards improvement of surveillance programs published pages: e0173470, ISSN: 1932-6203, DOI: 10.1371/journal.pone.0173470	PLOS ONE 12/3	2020-04-25
2017	J. van Beek, A.A. van der Eijk, P.L.A. Fraaij, K. Caliskan, K. Cransberg, M. Dalinghaus, R.A.S. Hoek, H.J. Metselaar, J. Roodnat, H. Vennema, M.P.G. Koopmans Chronic norovirus infection among solid organ recipients in a tertiary careÂ hospital, the Netherlands, 2006â€“2014 published pages: 265.e9-265.e13, ISSN: 1198-743X, DOI: 10.1016/j.cmi.2016.12.010	Clinical Microbiology and Infection 23/4	2020-04-25
2017	Anna Papa, Anastasia Kontana, Katerina Tsioka, Anastasios Saratsis, Smaragda Sotiraki Novel phlebovirus detected in Haemaphysalis parva ticks in a Greek island published pages: 157-160, ISSN: 1877-959X, DOI: 10.1016/j.ttbdis.2016.10.012	Ticks and Tick-borne Diseases 8/1	2020-04-25
2017	K. G. Joensen, A. L. Ã˜. Engsbro, O. Lukjancenko, R. S. Kaas, O. Lund, H. Westh, F. M. Aarestrup Evaluating next-generation sequencing for direct clinical diagnostics in diarrhoeal disease published pages: 1325-1338, ISSN: 0934-9723, DOI: 10.1007/s10096-017-2947-2	European Journal of Clinical Microbiology & Infectious Diseases 36/7	2020-04-25
2017	David F. Nieuwenhuijse, Marion P. G. Koopmans Metagenomic Sequencing for Surveillance of Food- and Waterborne Viral Diseases published pages: , ISSN: 1664-302X, DOI: 10.3389/fmicb.2017.00230	Frontiers in Microbiology 8	2020-04-25
2017	Kore Schlottau, Bernd Hoffmann, Timo Homeier-Bachmann, Christine Fast, Rainer G. Ulrich, Martin Beer, Donata Hoffmann Multiple detection of zoonotic variegated squirrel bornavirus 1 RNA in different squirrel species suggests a possible unknown origin for the virus published pages: 2747-2754, ISSN: 0304-8608, DOI: 10.1007/s00705-017-3432-z	Archives of Virology 162/9	2020-04-25
2016	Matthew Cotten, Marion Koopmans Next-generation sequencing and norovirus published pages: 719-722, ISSN: 1746-0794, DOI: 10.2217/fvl-2016-0099	Future Virology 11/11	2020-04-25
2016	Claudia Schulz, Cyril Viarouge, Corinne Sailleau, Martin Beer, Damien Vitour, Dirk HÃ¶per, Massimo Palmarini, Maria Jenckel, StÃ©phan Zientara, Bernd Hoffmann, Emmanuel BrÃ©ard, MÃ©lanie Gallois Bluetongue virus serotype 27: Detection and characterization of two novel variants in Corsica, France published pages: , ISSN: 0022-1317, DOI: 10.1099/jgv.0.000557	Journal of General Virology	2020-04-25
2016	Sylvie Lecollinet, Yannick Blanchard, Christine Manson, Steeve Lowenski, Eve Laloy, HÃ©lÃ¨ne Quenault, Fabrice Touzain, Pierrick Lucas, Cyril Eraud, CÃ©line Bahuon, StÃ©phan Zientara, CÃ©cile Beck, Anouk Decors Dual Emergence of Usutu Virus in Common Blackbirds, Eastern France, 2015 published pages: 2225-2225, ISSN: 1080-6040, DOI: 10.3201/eid2212.161272	Emerging Infectious Diseases 22/12	2020-04-25
2017	O. Pipek, D. Ribli, J. MolnÃ¡r, Ã. PÃ³ti, M. Krzystanek, A. Bodor, G. E. TusnÃ¡dy, Z. Szallasi, I. Csabai, D. SzÃ¼ts Fast and accurate mutation detection in whole genome sequences of multiple isogenic samples with IsoMut published pages: , ISSN: 1471-2105, DOI: 10.1186/s12859-017-1492-4	BMC Bioinformatics 18/1	2020-04-25
2017	Djahida Benhouda, AhcÃ¨ne Hakem, Anna Rosa Sannella, Afaf Benhouda, Simone M. CacciÃ² First molecular investigation of Cryptosporidium spp. in young calves in Algeria published pages: 15, ISSN: 1776-1042, DOI: 10.1051/parasite/2017014	Parasite 24	2020-04-25
2017	Laury Baillon, Emilie MÃ©rour, JoÃ«lle Cabon, LÃ©naÃ¯g Louboutin, HÃ©lÃ¨ne Quenault, Fabrice Touzain, Thierry Morin, Yannick Blanchard, StÃ©phane Biacchesi, Michel BrÃ©mont A single amino acid change in the non-structural NV protein impacts the virulence phenotype of Viral hemorrhagic septicemia virus in trout published pages: 1181-1184, ISSN: 0022-1317, DOI: 10.1099/jgv.0.000830	Journal of General Virology 98/6	2020-04-25
2017	Anne Pohlmann, Elke Starick, Timm Harder, Christian Grund, Dirk HÃ¶per, Anja Globig, Christoph Staubach, Klaas Dietze, GÃ¼nter Strebelow, Reiner G. Ulrich, Jan SchinkÃ¶the, Jens P. Teifke, Franz J. Conraths, Thomas C. Mettenleiter, Martin Beer Outbreaks among Wild Birds and Domestic Poultry Caused by Reassorted Influenza A(H5N8) Clade 2.3.4.4 Viruses, Germany, 2016 published pages: 633-636, ISSN: 1080-6040, DOI: 10.3201/eid2304.161949	Emerging Infectious Diseases 23/4	2020-04-25
2016	Maris S Arcilla, Jarne M van Hattem, Sebastien Matamoros, Damian C Melles, John Penders, Menno D de Jong, Constance Schultsz Dissemination of the mcr-1 colistin resistance gene published pages: 147-149, ISSN: 1473-3099, DOI: 10.1016/S1473-3099(15)00541-1	The Lancet Infectious Diseases 16/2	2020-04-25
2017	Anna Papa, Enkeleda Velo, Perparim Kadiaj, Katerina Tsioka, Anastasia Kontana, Majlinda Kota, Silvia Bino Crimean-Congo hemorrhagic fever virus in ticks collected from livestock in Albania published pages: 496-500, ISSN: 1567-1348, DOI: 10.1016/j.meegid.2017.08.017	Infection, Genetics and Evolution 54	2020-04-25
2016	Rogier Bodewes, Siamak Zohari, Jesper S. Krog, Matthew D. Hall, Timm C. Harder, Theo M. Bestebroer, Marco W.G. van de Bildt, Monique I. Spronken, Lars E. Larsen, Ursula Siebert, Peter Wohlsein, Christina Puff, Frauke Seehusen, Wolfgang BaumgÃ¤rtner, Tero HÃ¤rkÃ¶nen, Saskia L. Smits, Sander Herfst, Albert D.M.E. Osterhaus, Ron A.M. Fouchier, Marion P. Koopmans, Thijs Kuiken Spatiotemporal analysis of the genetic diversity of seal influenza A(H10N7) virus, Northwestern Europe published pages: JVI.03046-15, ISSN: 0022-538X, DOI: 10.1128/JVI.03046-15	Journal of Virology	2020-04-25
2017	Guy Baele, Philippe Lemey, Andrew Rambaut, Marc A. Suchard Adaptive MCMC in Bayesian phylogenetics: an application to analyzing partitioned data in BEAST published pages: 1798-1805, ISSN: 1367-4803, DOI: 10.1093/bioinformatics/btx088	Bioinformatics 33/12	2020-04-25
2018	Chutchai Piewbang, Wendy K. Jo, Christina Puff, Martin Ludlow, Erhard van der Vries, Wijit Banlunara, Anudep Rungsipipat, Jochen Kruppa, Klaus Jung, Somporn Techangamsuwan, Wolfgang BaumgÃ¤rtner, Albert D. M. E. Osterhaus Canine Bocavirus Type 2 Infection Associated With Intestinal Lesions published pages: 434-441, ISSN: 0300-9858, DOI: 10.1177/0300985818755253	Veterinary Pathology 55/3	2020-04-25
2016	A. Globig, E. Starick, T. Homeier, A. Pohlmann, C. Grund, P. Wolf, A. Zimmermann, C. Wolf, D. Heim, H. SchlÃ¶ÃŸer, S. Zander, M. Beer, F. J. Conraths, T. C. Harder Epidemiological and Molecular Analysis of an Outbreak of Highly Pathogenic Avian Influenza H5N8 clade 2.3.4.4 in a German Zoo: Effective Disease Control with Minimal Culling published pages: , ISSN: 1865-1674, DOI: 10.1111/tbed.12570	Transboundary and Emerging Diseases	2020-04-25
2016	Anna Papa, Elton Rogozi, Enkelejda Velo, Evangelia Papadimitriou, Silvia Bino Genetic detection of hantaviruses in rodents, Albania published pages: n/a-n/a, ISSN: 0146-6615, DOI: 10.1002/jmv.24486	Journal of Medical Virology	2020-04-25
2015	JosÃ© de la Fuente, Iratxe DÃez-Delgado, Marinela Contreras, JoaquÃn Vicente, Alejandro Cabezas-Cruz, Marina Manrique, Raquel Tobes, Vladimir LÃ³pez, Beatriz Romero, Lucas DomÃnguez, Joseba M. Garrido, RamÃ³n Juste, Christian Gortazar Complete Genome Sequences of Field Isolates of Mycobacterium bovis and Mycobacterium caprae published pages: e00247-15, ISSN: 2169-8287, DOI: 10.1128/genomeA.00247-15	Genome Announcements 3/3	2020-04-25
2016	Anna Papa, Styliani Pappa, Elitsa Panayotova, Elpida Papadopoulou, Iva Christova Molecular epidemiology of Crimean-Congo hemorrhagic fever in Bulgaria-An update published pages: 769-773, ISSN: 0146-6615, DOI: 10.1002/jmv.24400	Journal of Medical Virology 88/5	2020-04-25
2016	Matthew D. Hall, Mark E. J. Woolhouse, and Andrew Rambaut The effects of sampling strategy on the quality of reconstruction of viral population dynamics using Bayesian skyline family coalescent methods: A simulation study published pages: 1-14, ISSN: 2057-1577, DOI: 10.1093/ve/vew003	Virus Evolution 2016, 2(1)	2020-04-25
2016	Filip Bielejec, Guy Baele, Bram Vrancken, Marc A. Suchard, Andrew Rambaut, Philippe Lemey SpreaD3: Interactive Visualization of Spatiotemporal History and Trait Evolutionary Processes published pages: 2167-2169, ISSN: 0737-4038, DOI: 10.1093/molbev/msw082	Molecular Biology and Evolution 33/8	2020-04-25
2017	Alejandro Cabezas-Cruz, Lourdes Mateos-HernÃ¡ndez, Pilar Alberdi, Margarita Villar, Gilles Riveau, Emmanuel Hermann, Anne-Marie Schacht, Jamal Khalife, Margarida Correia-Neves, Christian Gortazar, JosÃ© de la Fuente Effect of blood type on anti-Î±-Gal immunity and the incidence of infectious diseases published pages: e301, ISSN: 1226-3613, DOI: 10.1038/emm.2016.164	Experimental & Molecular Medicine 49/3	2020-04-25
2015	M de Graaf, J van Beek, H Vennema, A Podkolzin, J Hewitt, F Bucardo, K Templeton, J Mans, J Nordgren, G Reuter, M Lynch, L Rasmussen, N Iritani, M Chan, V Martella, K Ambert-Balay, J VinjÃ©, P White, M Koopmans Emergence of a novel GII.17 norovirus â€“ End of the GII.4 era? published pages: 21178, ISSN: 1560-7917, DOI: 10.2807/1560-7917.ES2015.20.26.21178	Eurosurveillance 20/26	2020-04-25
2018	Jessica R. Spengler, Dennis A. Bente, Mike Bray, Felicity Burt, Roger Hewson, GÃ¼lay Korukluoglu, Ali Mirazimi, Friedemann Weber, Anna Papa Second International Conference on Crimean-Congo Hemorrhagic Fever published pages: 137-147, ISSN: 0166-3542, DOI: 10.1016/j.antiviral.2017.11.019	Antiviral Research 150	2020-04-25
2016	Reina Sikkema, Marion Koopmans One Health training and research activities in Western Europe published pages: 33703, ISSN: 2000-8686, DOI: 10.3402/iee.v6.33703	Infection Ecology & Epidemiology 6/1	2020-04-25
2015	Thomas Nordahl Petersen, Simon Rasmussen, Henrik Hasman, Christian CarÃ¸e, Jacob BÃ¦lum, Anna Charlotte Schultz, Lasse Bergmark, Christina A. Svendsen, Ole Lund, Thomas Sicheritz-PontÃ©n, Frank M. Aarestrup Meta-genomic analysis of toilet waste from long distance flights; a step towards global surveillance of infectious diseases and antimicrobial resistance published pages: 11444, ISSN: 2045-2322, DOI: 10.1038/srep11444	Scientific Reports 5	2020-04-25
2017	Celine Nadon, Ivo Van Walle, Peter Gerner-Smidt, Josefina Campos, Isabel Chinen, Jeniffer Concepcion-Acevedo, Brent Gilpin, Anthony M. Smith, Kai Man Kam, Enrique Perez, Eija Trees, Kristy Kubota, Johanna Takkinen, Eva MÃ¸ller Nielsen, Heather Carleton PulseNet International: Vision for the implementation of whole genome sequencing (WGS) for global food-borne disease surveillance published pages: , ISSN: 1025-496X, DOI: 10.2807/1560-7917.ES.2017.22.23.30544	Eurosurveillance 22/23	2020-04-25
2016	Basil Britto Xavier, Anupam J. Das, Guy Cochrane, Sandra De Ganck, Samir Kumar-Singh, Frank MÃ¸ller Aarestrup, Herman Goossens, Surbhi Malhotra-Kumar Consolidating and Exploring Antibiotic Resistance Gene Data Resources published pages: 851-859, ISSN: 0095-1137, DOI: 10.1128/JCM.02717-15	Journal of Clinical Microbiology 54/4	2020-04-25
2018	FrÃ©dÃ©rique Pasquali, Federica Palma, Laurent Guillier, Alex Lucchi, Alessandra De Cesare, Gerardo Manfreda Listeria monocytogenes Sequence Types 121 and 14 Repeatedly Isolated Within One Year of Sampling in a Rabbit Meat Processing Plant: Persistence and Ecophysiology published pages: , ISSN: 1664-302X, DOI: 10.3389/fmicb.2018.00596	Frontiers in Microbiology 9	2020-04-25
2016	Chantal BEM Reusken, V Stalin Raj, Marion P Koopmans, Bart L Haagmans Cross host transmission in the emergence of MERS coronavirus published pages: 55-62, ISSN: 1879-6257, DOI: 10.1016/j.coviro.2016.01.004	Current Opinion in Virology 16	2020-04-25
2017	Susanne SchjÃ¸rring, Sofie Gillesberg Lassen, Tenna Jensen, Alexandra Moura, Jette S Kjeldgaard, Luise MÃ¼ller, Stine Thielke, Alexandre Leclercq, Mylene M Maury, Mathieu Tourdjman, Marie-Pierre Donguy, Marc Lecuit, Steen Ethelberg, Eva M Nielsen Cross-border outbreak of listeriosis caused by cold-smoked salmon, revealed by integrated surveillance and whole genome sequencing (WGS), Denmark and France, 2015 to 2017 published pages: , ISSN: 1560-7917, DOI: 10.2807/1560-7917.ES.2017.22.50.17-00762	Eurosurveillance 22/50	2020-04-25
2017	Daniel Cadar, Renke LÃ¼hken, Henk van der Jeugd, Mutien Garigliany, Ute Ziegler, Markus Keller, Jennifer Lahoreau, Lars Lachmann, Norbert Becker, Marja Kik, Bas B Oude Munnink, Stefan Bosch, Egbert Tannich, Annick Linden, Volker Schmidt, Marion P Koopmans, Jolianne Rijks, Daniel Desmecht, Martin H Groschup, Chantal Reusken, Jonas Schmidt-Chanasit Widespread activity of multiple lineages of Usutu virus, western Europe, 2016 published pages: , ISSN: 1025-496X, DOI: 10.2807/1560-7917.ES.2017.22.4.30452	Eurosurveillance 22/4	2020-04-25
2017	SÃ©bastien Matamoros, Jarne M. van Hattem, Maris S. Arcilla, Niels Willemse, Damian C. Melles, John Penders, Trung Nguyen Vinh, Ngo Thi Hoa, Menno D. de Jong, Constance Schultsz Global phylogenetic analysis of Escherichia coli and plasmids carrying the mcr-1 gene indicates bacterial diversity but plasmid restriction published pages: , ISSN: 2045-2322, DOI: 10.1038/s41598-017-15539-7	Scientific Reports 7/1	2020-04-25
2015	Alessia Franco, Pimlapas Leekitcharoenphon, Fabiola Feltrin, Patricia Alba, Gessica Cordaro, Manuela Iurescia, Rita Tolli, Mario Dâ€™Incau, Monica Staffolani, Elisabetta Di Giannatale, Rene S. Hendriksen, Antonio Battisti Emergence of a Clonal Lineage of Multidrug-Resistant ESBL-Producing Salmonella Infantis Transmitted from Broilers and Broiler Meat to Humans in Italy between 2011 and 2014 published pages: e0144802, ISSN: 1932-6203, DOI: 10.1371/journal.pone.0144802	PLOS ONE 10/12	2020-04-25
2017	Arnaud Felten, Laurent Guillier, Nicolas Radomski, Michel-Yves Mistou, Renaud Lailler, Sabrina Cadel-Six Genome Target Evaluator (GTEvaluator): A workflow exploiting genome dataset to measure the sensitivity and specificity of genetic markers published pages: e0182082, ISSN: 1932-6203, DOI: 10.1371/journal.pone.0182082	PLOS ONE 12/7	2020-04-25
2017	Hayden C. Metsky, Christian B. Matranga, Shirlee Wohl, Stephen F. Schaffner, Catherine A. Freije, Sarah M. Winnicki, Kendra West, James Qu, Mary Lynn Baniecki, Adrianne Gladden-Young, Aaron E. Lin, Christopher H. Tomkins-Tinch, Simon H. Ye, Daniel J. Park, Cynthia Y. Luo, Kayla G. Barnes, Rickey R. Shah, Bridget Chak, Giselle Barbosa-Lima, Edson Delatorre, Yasmine R. Vieira, Lauren M. Paul, Amanda L. Tan, Carolyn M. Barcellona, Mario C. Porcelli, Chalmers Vasquez, Andrew C. Cannons, Marshall R. Cone, Kelly N. Hogan, Edgar W. Kopp, Joshua J. Anzinger, Kimberly F. Garcia, Leda A. Parham, Rosa M. GÃ©lvez RamÃrez, Maria C. Miranda Montoya, Diana P. Rojas, Catherine M. Brown, Scott Hennigan, Brandon Sabina, Sarah Scotland, Karthik Gangavarapu, Nathan D. Grubaugh, Glenn Oliveira, Refugio Robles-Sikisaka, Andrew Rambaut, Lee Gehrke, Sandra Smole, M. Elizabeth Halloran, Luis Villar, Salim Mattar, Ivette Lorenzana, Jose Cerbino-Neto, Clarissa Valim, Wim Degrave, Patricia T. Bozza, Andreas Gnirke, Kristian G. Andersen, Sharon Isern, Scott F. Michael, Fernando A. Bozza, Thiago M. L. Souza, Irene Bosch, Nathan L. Yozwiak, Bronwyn L. MacInnis, Pardis C. Sabeti Zika virus evolution and spread in the Americas published pages: 411-415, ISSN: 0028-0836, DOI: 10.1038/nature22402	Nature 546/7658	2020-04-25
2016	The Global Consortium for H5N8 and Related Influenza Viruses Role for migratory wild birds in the global spread of avian influenza H5N8 published pages: 213-217, ISSN: 0036-8075, DOI: 10.1126/science.aaf8852	Science 354/6309	2020-04-25
2016	Edward C. Holmes, Gytis Dudas, Andrew Rambaut, Kristian G. Andersen The evolution of Ebola virus: Insights from the 2013â€“2016 epidemic published pages: 193-200, ISSN: 0028-0836, DOI: 10.1038/nature19790	Nature 538/7624	2020-04-25
2016	Richard Gibson, Blaise Alako, Clara Amid, Ana CerdeÃ±o-TÃ¡rraga, Iain Cleland, Neil Goodgame, Petra tenÂ Hoopen, Suran Jayathilaka, Simon Kay, Rasko Leinonen, Xin Liu, Swapna Pallreddy, Nima Pakseresht, Jeena Rajan, Marc RossellÃ³, Nicole Silvester, Dmitriy Smirnov, Ana Luisa Toribio, Daniel Vaughan, Vadim Zalunin, Guy Cochrane Biocuration of functional annotation at the European nucleotide archive published pages: D58-D66, ISSN: 0305-1048, DOI: 10.1093/nar/gkv1311	Nucleic Acids Research 44/D1	2020-04-25
2016	Dirk HÃ¶per, Anne Pohlmann Discovery and diagnosis of new viral pathogens: proposal for a generic workflow based on next-generation sequencing and new integrated data analysis approaches published pages: 58-62, ISSN: 2110-5294, DOI:	Euroreference Euroreference 1 - June 2016 MET	2020-04-25
2017	Anna Papa Emerging arboviral human diseases in Southern Europe published pages: 1315-1322, ISSN: 0146-6615, DOI: 10.1002/jmv.24803	Journal of Medical Virology 89/8	2020-04-25
2017	F. Pfaff, K. Schlottau, S. Scholes, A. Courtenay, B. Hoffmann, D. HÃ¶per, M. Beer A novel astrovirus associated with encephalitis and ganglionitis in domestic sheep published pages: 677-682, ISSN: 1865-1674, DOI: 10.1111/tbed.12623	Transboundary and Emerging Diseases 64/3	2020-04-25
2016	Mart M. Lamers, V. Stalin Raj, Mahâ€™d Shafei, Sami Sheikh Ali, Sultan M. Abdallh, Mahmoud Gazo, Samer Nofal, Xiaoyan Lu, Dean D. Erdman, Marion P. Koopmans, Mohammad Abdallat, Aktham Haddadin, Bart L. Haagmans Deletion Variants of Middle East Respiratory Syndrome Coronavirus from Humans, Jordan, 2015 published pages: 716-719, ISSN: 1080-6040, DOI: 10.3201/eid2204.152065	Emerging Infectious Diseases 22/4	2020-04-25
2015	Steve Bexton, Lidewij C. Wiersma, Sarah Getu, Peter R. van Run, Georges M.G.M. Verjans, Debby Schipper, Claudia M.E. Schapendonk, Rogier Bodewes, Lucy Oldroyd, Bart L. Haagmans, Marion M.P. Koopmans, Saskia L. Smits Detection of Circovirus in Foxes with Meningoencephalitis, United Kingdom, 2009â€“2013 published pages: 1205-1208, ISSN: 1080-6040, DOI: 10.3201/eid2107.150228	Emerging Infectious Diseases 21/7	2020-04-25
2015	Henrik Hasman, Anette M. Hammerum, Frank Hansen, Rene S. Hendriksen, Bente Olesen, Yvonne AgersÃ¸, Ea Zankari, Pimlapas Leekitcharoenphon, Marc Stegger, Rolf S. Kaas, Lina M. Cavaco, Dennis S. Hansen, Frank M. Aarestrup, Robert L. Skov Detection of mcr-1 encoding plasmid-mediated colistin-resistant Escherichia coli isolates from human bloodstream infection and imported chicken meat, Denmark 2015 published pages: , ISSN: 1025-496X, DOI: 10.2807/1560-7917.ES.2015.20.49.30085	Eurosurveillance 20/49	2020-04-25
2018	Anna Papa, Elpida Papadopoulou, Katerina Tsioka, Anastasia Kontana, Styliani Pappa, Ageliki Melidou, Nektarios D. Giadinis Isolation and whole-genome sequencing of a Crimean-Congo hemorrhagic fever virus strain, Greece published pages: 788-791, ISSN: 1877-959X, DOI: 10.1016/j.ttbdis.2018.02.024	Ticks and Tick-borne Diseases 9/4	2020-04-25
2016	Marjolein J Poen, Josanne H Verhagen, Ruth J Manvell, Ian Brown, Theo M Bestebroer, Stefan van der Vliet, Oanh Vuong, Rachel D Scheuer, Henk P van der Jeugd, Bart A Nolet, Erik Kleyheeg, Gerhard J D M MÃ¼skens, Frank A Majoor, Christian Grund, Ron A M Fouchier Lack of virological and serological evidence for continued circulation of highly pathogenic avian influenza H5N8 virus in wild birds in the Netherlands, 14 November 2014 to 31 January 2016 published pages: , ISSN: 1025-496X, DOI: 10.2807/1560-7917.ES.2016.21.38.30349	Eurosurveillance 21/38	2020-04-25
2018	Anne Pohlmann, Elke Starick, Christian Grund, Dirk HÃ¶per, GÃ¼nter Strebelow, Anja Globig, Christoph Staubach, Franz J. Conraths, Thomas C. Mettenleiter, Timm Harder, Martin Beer Swarm incursions of reassortants of highly pathogenic avian influenza virus strains H5N8 and H5N5, clade 2.3.4.4b, Germany, winter 2016/17 published pages: , ISSN: 2045-2322, DOI: 10.1038/s41598-017-16936-8	Scientific Reports 8/1	2020-04-25
2018	Thomas Bruun Rasmussen, Maria Beatrice Boniotti, Alice Papetti, BÃ©atrice Grasland, Jean-Pierre Frossard, Akbar Dastjerdi, Marcel Hulst, Dennis Hanke, Anne Pohlmann, Sandra Blome, Wim H. M. van der Poel, Falko Steinbach, Yannick Blanchard, Antonio Lavazza, Anette BÃ¸tner, Graham J. Belsham Full-length genome sequences of porcine epidemic diarrhoea virus strain CV777; Use of NGS to analyse genomic and sub-genomic RNAs published pages: e0193682, ISSN: 1932-6203, DOI: 10.1371/journal.pone.0193682	PLOS ONE 13/3	2020-04-25
2017	Anna Papa, Katerina Tsergouli, Katerina Tsioka, Ali Mirazimi Crimean-Congo Hemorrhagic Fever: Tick-Host-Virus Interactions published pages: , ISSN: 2235-2988, DOI: 10.3389/fcimb.2017.00213	Frontiers in Cellular and Infection Microbiology 7	2020-04-25
2016	Anna Papa, Tzimoula Kotrotsiou, Elpida Papadopoulou, Chantal Reusken, Corine GeurtsvanKessel, Marion Koopmans Challenges in laboratory diagnosis of acute viral central nervous system infections in the era of emerging infectious diseases: the syndromic approach published pages: 829-836, ISSN: 1478-7210, DOI: 10.1080/14787210.2016.1215914	Expert Review of Anti-infective Therapy 14/9	2020-04-25
2016	Surbhi Malhotra-Kumar, Basil Britto Xavier, Anupam J Das, Christine Lammens, Patrick Butaye, Herman Goossens Colistin resistance gene mcr-1 harboured on a multidrug resistant plasmid published pages: 283-284, ISSN: 1473-3099, DOI: 10.1016/S1473-3099(16)00012-8	The Lancet Infectious Diseases 16/3	2020-04-25
2016	D. HÃ–PER, T.C. METTENLEITER, M. BEER Metagenomic approaches to identifying infectious agents published pages: 83-93, ISSN: 0253-1933, DOI: 10.20506/rst.35.1.2419	Revue Scientifique et Technique de l\'OIE 35/1	2020-04-25
2016	M. Beer, K. Wernike, C. DrÃ¤ger, D. HÃ¶per, A. Pohlmann, C. Bergermann, C. SchrÃ¶der, S. Klinkhammer, S. Blome, B. Hoffmann High Prevalence of Highly Variable Atypical Porcine Pestiviruses Found in Germany published pages: , ISSN: 1865-1674, DOI: 10.1111/tbed.12532	Transboundary and Emerging Diseases	2020-04-25
2018	Barbara MÃ¼hlemann, Ashot Margaryan, Peter de Barros Damgaard, Morten E. Allentoft, Lasse Vinner, Anders J. Hansen, Andrzej Weber, Vladimir I. Bazaliiskii, Martyna Molak, Jette Arneborg, Wieslaw Bogdanowicz, Ceri Falys, Mikhail Sablin, VÃ¡clav SmrÄka, Sabine Sten, Kadicha Tashbaeva, Niels Lynnerup, Martin Sikora, Derek J. Smith, Ron A. M. Fouchier, Christian Drosten, Karl-GÃ¶ran SjÃ¶gren, Kristian Kristiansen, Eske Willerslev, Terry C. Jones Ancient human parvovirus B19 in Eurasia reveals its long-term association with humans published pages: 7557-7562, ISSN: 0027-8424, DOI: 10.1073/pnas.1804921115	Proceedings of the National Academy of Sciences 115/29	2020-04-25
2018	Philipp Kirstahler, SÃ¸ren Solborg Bjerrum, Alice Friis-MÃ¸ller, Morten la Cour, Frank M. Aarestrup, Henrik Westh, SÃ¼nje Johanna Pamp Genomics-Based Identification of Microorganisms in Human Ocular Body Fluid published pages: , ISSN: 2045-2322, DOI: 10.1038/s41598-018-22416-4	Scientific Reports 8/1	2020-04-25
2016	M. Nadeem, I. Spitzbarth, V. Haist, K. Rohn, K. Tauscher, K. Rohn, A. Bossers, J. Langeveld, P. Papasavva-Stylianou, M. H. Groschup, W. BaumgÃ¤rtner, I. Gerhauser, C. Fast Immunolabelling of non-phosphorylated neurofilament indicates damage of spinal cord axons in TSE-infected goats published pages: 141.1-141, ISSN: 0042-4900, DOI: 10.1136/vr.103425	Veterinary Record 178/6	2020-04-25
2016	Frank M. Aarestrup, Marion G. Koopmans Sharing Data for Global Infectious Disease Surveillance and Outbreak Detection published pages: 241-245, ISSN: 0966-842X, DOI: 10.1016/j.tim.2016.01.009	Trends in Microbiology 24/4	2020-04-25
2015	Jan Felix Drexler, Victor M. Corman, Alexander N. Lukashev, Judith M. A. van den Brand, Anatoly P. Gmyl, Sebastian BrÃ¼nink, Andrea Rasche, Nicole SeggewiÎ², Hui Feng, Lonneke M. Leijten, Peter Vallo, Thijs Kuiken, Andreas Dotzauer, Rainer G. Ulrich, Stanley M. Lemon, Christian Drosten Evolutionary origins of hepatitis A virus in small mammals published pages: 15190-15195, ISSN: 0027-8424, DOI: 10.1073/pnas.1516992112	Proceedings of the National Academy of Sciences 112/49	2020-04-25
2016	Mark E.J. Woolhouse, Liam Brierley, Chris McCaffery, Sam Lycett Assessing the Epidemic Potential of RNA and DNA Viruses published pages: 2037-2044, ISSN: 1080-6040, DOI: 10.3201/eid2212.160123	Emerging Infectious Diseases 22/12	2020-04-25
2016	Miranda de Graaf, Janko van Beek, Marion P. G. Koopmans Human norovirus transmission and evolution in a changing world published pages: 421-433, ISSN: 1740-1526, DOI: 10.1038/nrmicro.2016.48	Nature Reviews Microbiology 14/7	2020-04-25
2018	Philip T. L. C. Clausen, Frank M. Aarestrup, Ole Lund Rapid and precise alignment of raw reads against redundant databases with KMA published pages: , ISSN: 1471-2105, DOI: 10.1186/s12859-018-2336-6	BMC Bioinformatics 19/1	2020-04-25
2016	Surbhi Malhotra-Kumar, Basil Britto Xavier, Anupam J Das, Christine Lammens, Ha Thi Thu Hoang, Ngoc Thi Pham, Herman Goossens Colistin-resistant Escherichia coli harbouring mcr-1 isolated from food animals in Hanoi, Vietnam published pages: 286-287, ISSN: 1473-3099, DOI: 10.1016/S1473-3099(16)00014-1	The Lancet Infectious Diseases 16/3	2020-04-25
2018	Mark E. J. Woolhouse, Liam Brierley Epidemiological characteristics of human-infective RNA viruses published pages: 180017, ISSN: 2052-4463, DOI: 10.1038/sdata.2018.17	Scientific Data 5	2020-04-25
2017	Ana Luisa Toribio, Blaise Alako, Clara Amid, Ana CerdeÃ±o-TarrÃ¡ga, Laura Clarke, Iain Cleland, Susan Fairley, Richard Gibson, Neil Goodgame, Petra tenÂ Hoopen, Suran Jayathilaka, Simon Kay, Rasko Leinonen, Xin Liu, JosuÃ© MartÃnez-Villacorta, Nima Pakseresht, Jeena Rajan, Kethi Reddy, Marc Rosello, Nicole Silvester, Dmitriy Smirnov, Daniel Vaughan, Vadim Zalunin, Guy Cochrane European Nucleotide Archive in 2016 published pages: D32-D36, ISSN: 0305-1048, DOI: 10.1093/nar/gkw1106	Nucleic Acids Research 45/D1	2020-04-25
2017	Mathis Hjort HjelmsÃ¸, Maria HellmÃ©r, Xavier Fernandez-Cassi, NatÃ lia Timoneda, Oksana Lukjancenko, Michael Seidel, Dennis ElsÃ¤sser, Frank M. Aarestrup, Charlotta LÃ¶fstrÃ¶m, SÃlvia Bofill-Mas, Josep F. Abril, Rosina Girones, Anna Charlotte Schultz Evaluation of Methods for the Concentration and Extraction of Viruses from Sewage in the Context of Metagenomic Sequencing published pages: e0170199, ISSN: 1932-6203, DOI: 10.1371/journal.pone.0170199	PLOS ONE 12/1	2020-04-25
2017	Martin C.W. Chan, Yunwen Hu, Haili Chen, Alexander T. Podkolzin, Ekaterina V. Zaytseva, Jun Komano, Naomi Sakon, Yong Poovorawan, Sompong Vongpunsawad, Thanundorn Thanusuwannasak, Joanne Hewitt, Dawn Croucher, Nikail Collins, Jan VinjÃ©, Xiaoli L. Pang, Bonita E. Lee, Miranda de Graaf, Janko van Beek, Harry Vennema, Marion P.G. Koopmans, Sandra Niendorf, Mateja Poljsak-Prijatelj, Andrej Steyer, Peter A. White, Jennifer H. Lun, Janet Mans, Tin-Nok Hung, Kirsty Kwok, Kelton Cheung, Nelson Lee, Paul K.S. Chan Global Spread of Norovirus GII.17 Kawasaki 308, 2014â€“2016 published pages: 1359-1354, ISSN: 1080-6040, DOI: 10.3201/eid2308.161138	Emerging Infectious Diseases 23/8	2020-04-25
2017	Nathan D. Grubaugh, Jason T. Ladner, Moritz U. G. Kraemer, Gytis Dudas, Amanda L. Tan, Karthik Gangavarapu, Michael R. Wiley, Stephen White, Julien ThÃ©zÃ©, Diogo M. Magnani, Karla Prieto, Daniel Reyes, Andrea M. Bingham, Lauren M. Paul, Refugio Robles-Sikisaka, Glenn Oliveira, Darryl Pronty, Carolyn M. Barcellona, Hayden C. Metsky, Mary Lynn Baniecki, Kayla G. Barnes, Bridget Chak, Catherine A. Freije, Adrianne Gladden-Young, Andreas Gnirke, Cynthia Luo, Bronwyn MacInnis, Christian B. Matranga, Daniel J. Park, James Qu, Stephen F. Schaffner, Christopher Tomkins-Tinch, Kendra L. West, Sarah M. Winnicki, Shirlee Wohl, Nathan L. Yozwiak, Joshua Quick, Joseph R. Fauver, Kamran Khan, Shannon E. Brent, Robert C. Reiner, Paola N. Lichtenberger, Michael J. Ricciardi, Varian K. Bailey, David I. Watkins, Marshall R. Cone, Edgar W. Kopp, Kelly N. Hogan, Andrew C. Cannons, Reynald Jean, Andrew J. Monaghan, Robert F. Garry, Nicholas J. Loman, Nuno R. Faria, Mario C. Porcelli, Chalmers Vasquez, Elyse R. Nagle, Derek A. T. Cummings, Danielle Stanek, Andrew Rambaut, Mariano Sanchez-Lockhart, Pardis C. Sabeti, Leah D. Gillis, Scott F. Michael, Trevor Bedford, Oliver G. Pybus, Sharon Isern, Gustavo Palacios, Kristian G. Andersen Genomic epidemiology reveals multiple introductions of Zika virus into the United States published pages: 401-405, ISSN: 0028-0836, DOI: 10.1038/nature22400	Nature 546/7658	2020-04-25
2015	Timm Harder, Sebastian Maurer-Stroh, Anne Pohlmann, Elke Starick, Detlef HÃ¶reth-BÃ¶ntgen, Karin Albrecht, Gunter Pannwitz, Jens Teifke, Vithiagaran Gunalan, Raphael T.C. Lee, Carola Sauter-Louis, Timo Homeier, Christoph Staubach, Carola Wolf, GÃ¼nter Strebelow, Dirk HÃ¶per, Christian Grund, Franz J. Conraths, Thomas C. Mettenleiter, Martin Beer Influenza A(H5N8) Virus Similar to Strain in Korea Causing Highly Pathogenic Avian Influenza in Germany published pages: 860-863, ISSN: 1080-6040, DOI: 10.3201/eid2105.141897	Emerging Infectious Diseases 21/5	2020-04-25
2017	Federica Palma, FrÃ©dÃ©rique Pasquali, Alex Lucchi, Alessandra De Cesare, Gerardo Manfreda Whole genome sequencing for typing and characterisation of Listeria monocytogenes isolated in a rabbit meat processing plant published pages: , ISSN: 2239-7132, DOI: 10.4081/ijfs.2017.6879	Italian Journal of Food Safety 6/3	2020-04-25
2017	Barbara B. Raddatz, Ingo Spitzbarth, Katja A. Matheis, Arno Kalkuhl, Ulrich Deschl, Wolfgang BaumgÃ¤rtner, Reiner Ulrich Microarray-Based Gene Expression Analysis for Veterinary Pathologists: A Review published pages: 734-755, ISSN: 0300-9858, DOI: 10.1177/0300985817709887	Veterinary Pathology 54/5	2020-04-25
2015	Saskia L. Smits, Rogier Bodewes, Aritz Ruiz-GonzÃ¡lez, Wolfgang BaumgÃ¤rtner, Marion P. Koopmans, Albert D. M. E. Osterhaus, Anita C. SchÃ¼rch Recovering full-length viral genomes from metagenomes published pages: , ISSN: 1664-302X, DOI: 10.3389/fmicb.2015.01069	Frontiers in Microbiology 6	2020-04-25
2017	Gytis Dudas, Luiz Max Carvalho, Trevor Bedford, Andrew J. Tatem, Guy Baele, Nuno R. Faria, Daniel J. Park, Jason T. Ladner, Armando Arias, Danny Asogun, Filip Bielejec, Sarah L. Caddy, Matthew Cotten, Jonathan Dâ€™Ambrozio, Simon Dellicour, Antonino Di Caro, Joseph W. Diclaro, Sophie Duraffour, Michael J. Elmore, Lawrence S. Fakoli, Ousmane Faye, Merle L. Gilbert, Sahr M. Gevao, Stephen Gire, Adrianne Gladden-Young, Andreas Gnirke, Augustine Goba, Donald S. Grant, Bart L. Haagmans, Julian A. Hiscox, Umaru Jah, Jeffrey R. Kugelman, Di Liu, Jia Lu, Christine M. Malboeuf, Suzanne Mate, David A. Matthews, Christian B. Matranga, Luke W. Meredith, James Qu, Joshua Quick, Suzan D. Pas, My V. T. Phan, Georgios Pollakis, Chantal B. Reusken, Mariano Sanchez-Lockhart, Stephen F. Schaffner, John S. Schieffelin, Rachel S. Sealfon, Etienne Simon-Loriere, Saskia L. Smits, Kilian Stoecker, Lucy Thorne, Ekaete Alice Tobin, Mohamed A. Vandi, Simon J. Watson, Kendra West, Shannon Whitmer, Michael R. Wiley, Sarah M. Winnicki, Shirlee Wohl, Roman WÃ¶lfel, Nathan L. Yozwiak, Kristian G. Andersen, Sylvia O. Blyden, Fatorma Bolay, Miles W. Carroll, Bernice Dahn, Boubacar Diallo, Pierre Formenty, Christophe Fraser, George F. Gao, Robert F. Garry, Ian Goodfellow, Stephan GÃ¼nther, Christian T. Happi, Edward C. Holmes, Brima Kargbo, Sakoba KeÃ¯ta, Paul Kellam, Marion P. G. Koopmans, Jens H. Kuhn, Nicholas J. Loman, Nâ€™Faly Magassouba, Dhamari Naidoo, Stuart T. Nichol, Tolbert Nyenswah, Gustavo Palacios, Oliver G. Pybus, Pardis C. Sabeti, Amadou Sall, Ute StrÃ¶her, Isatta Wurie, Marc A. Suchard, Philippe Lemey, Andrew Rambaut Virus genomes reveal factors that spread and sustained the Ebola epidemic published pages: 309-315, ISSN: 0028-0836, DOI: 10.1038/nature22040	Nature 544/7650	2020-04-25
2016	My V. T. Phan, Pham Hong Anh, Nguyen Van Cuong, Bas B. Oude Munnink, Lia van der Hoek, Phuc Tran My, Tue Ngo Tri, Juliet E. Bryant, Stephen Baker, Guy Thwaites, Mark Woolhouse, Paul Kellam, Maia A. Rabaa, Matthew Cotten Unbiased whole-genome deep sequencing of human and porcine stool samples reveals circulation of multiple groups of rotaviruses and a putative zoonotic infection published pages: vew027, ISSN: 2057-1577, DOI: 10.1093/ve/vew027	Virus Evolution 2/2	2020-04-25
2015	J Verhagen, H van der Jeugd, B Nolet, R Slaterus, S Kharitonov, P de Vries, O Vuong, F Majoor, T Kuiken, R Fouchier Wild bird surveillance around outbreaks of highly pathogenic avian influenza A(H5N8) virus in the Netherlands, 2014, within the context of global flyways published pages: 21069, ISSN: 1560-7917, DOI: 10.2807/1560-7917.ES2015.20.12.21069	Eurosurveillance 20/12	2020-04-25
2016	Janko van Beek, Miranda de Graaf, Ming Xia, Xi Jiang, Jan VinjÃ©, Mathias Beersma, Erwin de Bruin, David van de Vijver, Melle Holwerda, Marlies van Houten, Annemarie M. Buisman, Rob van Binnendijk, Albert D. M. E. Osterhaus, Fiona van der Klis, Harry Vennema, Marion P. G. Koopmans Comparison of norovirus genogroup I, II and IV seroprevalence among children in the Netherlands, 1963, 1983 and 2006 published pages: 2255-2264, ISSN: 0022-1317, DOI: 10.1099/jgv.0.000533	Journal of General Virology 97/9	2020-04-25
2016	Andrea Rasche, Muhammad Saqib, Anne M. Liljander, Set Bornstein, Ali Zohaib, Stefanie Renneker, Katja Steinhagen, Renate Wernery, Mario Younan, Ilona Gluecks, Mosaad Hilali, Bakri E. Musa, Joerg Jores, Ulrich Wernery, Jan Felix Drexer, Christian Drosten, Victor Max Corman Hepatitis E Virus Infection in Dromedaries, North and East Africa, United Arab Emirates, and Pakistan, 1983â€“2015 published pages: 1249-1252, ISSN: 1080-6040, DOI: 10.3201/eid2207.160168	Emerging Infectious Diseases 22/7	2020-04-25
2016	C. GortÃ¡zar, J. F. Ruiz-Fons, U. HÃ¶fle Infections shared with wildlife: an updated perspective published pages: 511-525, ISSN: 1612-4642, DOI: 10.1007/s10344-016-1033-x	European Journal of Wildlife Research 62/5	2020-04-25
2016	Armando Arias, Simon J. Watson, Danny Asogun, Ekaete Alice Tobin, Jia Lu, My V. T. Phan, Umaru Jah, Raoul Emeric Guetiya Wadoum, Luke Meredith, Lucy Thorne, Sarah Caddy, Alimamy Tarawalie, Pinky Langat, Gytis Dudas, Nuno R. Faria, Simon Dellicour, Abdul Kamara, Brima Kargbo, Brima Osaio Kamara, Sahr Gevao, Daniel Cooper, Matthew Newport, Peter Horby, Jake Dunning, Foday Sahr, Tim Brooks, Andrew J.H. Simpson, Elisabetta Groppelli, Guoying Liu, Nisha Mulakken, Kate Rhodes, James Akpablie, Zabulon Yoti, Margaret Lamunu, Esther Vitto, Patrick Otim, Collins Owilli, Isaac Boateng, Lawrence Okoror, Emmanuel Omomoh, Jennifer Oyakhilome, Racheal Omiunu, Ighodalo Yemisis, Donatus Adomeh, Solomon Ehikhiametalor, Patience Akhilomen, Chris Aire, Andreas Kurth, Nicola Cook, Jan Baumann, Martin Gabriel, Roman WÃ¶lfel, Antonino Di Caro, Miles W. Carroll, Stephan GÃ¼nther, John Redd, Dhamari Naidoo, Oliver G. Pybus, Andrew Rambaut, Paul Kellam, Ian Goodfellow, Matthew Cotten Rapid outbreak sequencing of Ebola virus in Sierra Leone identifies transmission chains linked to sporadic cases published pages: vew016, ISSN: 2057-1577, DOI: 10.1093/ve/vew016	Virus Evolution 2/1	2020-04-25
2017	B. A. D. van Bunnik, M. E. J. Woolhouse Modelling the impact of curtailing antibiotic usage in food animals on antibiotic resistance in humans published pages: 161067, ISSN: 2054-5703, DOI: 10.1098/rsos.161067	Royal Society Open Science 4/4	2020-04-25
2017	N. R. Faria, J. Quick, I.M. Claro, J. ThÃ©zÃ©, J. G. de Jesus, M. Giovanetti, M. U. G. Kraemer, S. C. Hill, A. Black, A. C. da Costa, L. C. Franco, S. P. Silva, C.-H. Wu, J. Raghwani, S. Cauchemez, L. du Plessis, M. P. Verotti, W. K. de Oliveira, E. H. Carmo, G. E. Coelho, A. C. F. S. Santelli, L. C. Vinhal, C. M. Henriques, J. T. Simpson, M. Loose, K. G. Andersen, N. D. Grubaugh, S. Somasekar, C. Y. Chiu, J. E. MuÃ±oz-Medina, C. R. Gonzalez-Bonilla, C. F. Arias, L. L. Lewis-Ximenez, S. A. Baylis, A. O. Chieppe, S. F. Aguiar, C. A. Fernandes, P. S. Lemos, B. L. S. Nascimento, H. A. O. Monteiro, I. C. Siqueira, M. G. de Queiroz, T. R. de Souza, J. F. Bezerra, M. R. Lemos, G. F. Pereira, D. Loudal, L. C. Moura, R. Dhalia, R. F. FranÃ§a, T. MagalhÃ£es, E. T. Marques, T. Jaenisch, G. L. Wallau, M. C. de Lima, V. Nascimento, E. M. de Cerqueira, M. M. de Lima, D. L. Mascarenhas, J. P. Moura Neto, A. S. Levin, T. R. Tozetto-Mendoza, S. N. Fonseca, M. C. Mendes-Correa, F. P. Milagres, A. Segurado, E. C. Holmes, A. Rambaut, T. Bedford, M. R. T. Nunes, E. C. Sabino, L. C. J. Alcantara, N. J. Loman, O. G. Pybus Establishment and cryptic transmission of Zika virus in Brazil and the Americas published pages: 406-410, ISSN: 0028-0836, DOI: 10.1038/nature22401	Nature 546/7658	2020-04-25
2016	Alexander Postel, Florian Hansmann, Christine Baechlein, Nicole Fischer, Malik Alawi, Adam Grundhoff, Sarah Derking, JÃ¶rg TenhÃ¼ndfeld, Vanessa Maria Pfankuche, Vanessa Herder, Wolfgang BaumgÃ¤rtner, Michael Wendt, Paul Becher Presence of atypical porcine pestivirus (APPV) genomes in newborn piglets correlates with congenital tremor published pages: 27735, ISSN: 2045-2322, DOI: 10.1038/srep27735	Scientific Reports 6	2020-04-25
2015	Saskia L Smits, Suzan D Pas, Chantal B Reusken, Bart L Haagmans, Peirro Pertile, Corrado Cancedda, Kerry Dierberg, Isata Wurie, Abdul Kamara, David Kargbo, Sarah L Caddy, Armando Arias, Lucy Thorne, Jia Lu, Umaru Jah, Ian Goodfellow, Marion P Koopmans Genotypic anomaly in Ebola virus strains circulating in Magazine Wharf area, Freetown, Sierra Leone, 2015 published pages: , ISSN: 1025-496X, DOI: 10.2807/1560-7917.ES.2015.20.40.30035	Eurosurveillance 20/40	2020-04-25
2016	Basil Britto Xavier, Christine Lammens, Rohit Ruhal, Samir Kumar-Singh, Patrick Butaye, Herman Goossens, Surbhi Malhotra-Kumar Identification of a novel plasmid-mediated colistin-resistance gene, mcr-2 , in Escherichia coli , Belgium, June 2016 published pages: , ISSN: 1025-496X, DOI: 10.2807/1560-7917.ES.2016.21.27.30280	Eurosurveillance 21/27	2020-04-25
2016	Vladimir LÃ³pez, Margarita Villar, JoÃ£o QueirÃ³s, JoaquÃn Vicente, Lourdes Mateos-HernÃ¡ndez, Iratxe DÃez-Delgado, Marinela Contreras, Paulo C. Alves, Pilar Alberdi, Christian GortÃ¡zar, JosÃ© de la Fuente Comparative Proteomics Identifies Host Immune System Proteins Affected by Infection with Mycobacterium bovis published pages: e0004541, ISSN: 1935-2735, DOI: 10.1371/journal.pntd.0004541	PLOS Neglected Tropical Diseases 10/3	2020-04-25
2018	Rachel A. Taylor, Alexander D. C. Berriman, Paul Gale, Louise A. Kelly, Emma L. Snary A generic framework for spatial quantitative risk assessments of infectious diseases: Lumpy skin disease case study published pages: , ISSN: 1865-1674, DOI: 10.1111/tbed.12993	Transboundary and Emerging Diseases	2020-04-25
2015	BÃ©atrice Grasland, Lionel Bigault, CÃ©cilia Bernard, HÃ©lÃ¨ne Quenault, Olivier Toulouse, Christelle Fablet, Nicolas Rose, Fabrice Touzain, Yannick Blanchard Complete Genome Sequence of a Porcine Epidemic Diarrhea S Gene Indel Strain Isolated in France in December 2014 published pages: e00535-15, ISSN: 2169-8287, DOI: 10.1128/genomeA.00535-15	Genome Announcements 3/3	2020-04-25
2018	Sandra Diaz-Sanchez, AngÃ©lica HernÃ¡ndez-JarguÃn, Isabel G. FernÃ¡ndez de Mera, Pilar Alberdi, Erich Zweygarth, Christian Gortazar, JosÃ© de la Fuente Draft Genome Sequences of Anaplasma phagocytophilum , A.Â marginale , and A.Â ovis Isolates from Different Hosts published pages: e01503-17, ISSN: 2169-8287, DOI: 10.1128/genomeA.01503-17	Genome Announcements 6/5	2020-04-25
2017	Wendy K. Jo, Vanessa M. Pfankuche, Henning Petersen, Samuel Frei, Maya Kummrow, Stephan Lorenzen, Martin Ludlow, Julia Metzger, Wolfgang BaumgÃ¤rtner, Albert Osterhaus, Erhard van der Vries New Avian Hepadnavirus in Palaeognathous Bird, Germany published pages: 2089-2091, ISSN: 1080-6040, DOI: 10.3201/eid2312.161634	Emerging Infectious Diseases 23/12	2020-04-25
2018	Barbara MÃ¼hlemann, Terry C. Jones, Peter de Barros Damgaard, Morten E. Allentoft, Irina Shevnina, Andrey Logvin, Emma Usmanova, Irina P. Panyushkina, Bazartseren Boldgiv, Tsevel Bazartseren, Kadicha Tashbaeva, Victor Merz, Nina Lau, VÃ¡clav SmrÄka, Dmitry Voyakin, Egor Kitov, Andrey Epimakhov, Dalia Pokutta, Magdolna Vicze, T. Douglas Price, Vyacheslav Moiseyev, Anders J. Hansen, Ludovic Orlando, Simon Rasmussen, Martin Sikora, Lasse Vinner, Albert D. M. E. Osterhaus, Derek J. Smith, Dieter Glebe, Ron A. M. Fouchier, Christian Drosten, Karl-GÃ¶ran SjÃ¶gren, Kristian Kristiansen, Eske Willerslev Ancient hepatitis B viruses from the Bronze Age to the Medieval period published pages: 418-423, ISSN: 0028-0836, DOI: 10.1038/s41586-018-0097-z	Nature 557/7705	2020-04-25
2017	Annika Brinkmann, Koray ErgÃ¼nay, Aleksandar RadoniÄ‡, Zeliha Kocak Tufan, Cristina Domingo, Andreas Nitsche Development and preliminary evaluation of a multiplexed amplification and next generation sequencing method for viral hemorrhagic fever diagnostics published pages: e0006075, ISSN: 1935-2727, DOI: 10.1371/journal.pntd.0006075	PLOS Neglected Tropical Diseases 11/11	2020-04-25
2017	Anna Papa, Katerina Tsioka, Anastasia Kontana, Christos Papadopoulos, Nektarios Giadinis Bacterial pathogens and endosymbionts in ticks published pages: 31-35, ISSN: 1877-959X, DOI: 10.1016/j.ttbdis.2016.09.011	Ticks and Tick-borne Diseases 8/1	2020-04-25
2019	Markus H. Antwerpen, Enrico Georgi, Alexandra Nikolic, Gudrun Zoeller, Peter Wohlsein, Wolfgang BaumgÃ¤rtner, Christophe Peyrefitte, Remi Charrel, Hermann Meyer Use of Next Generation Sequencing to study two cowpox virus outbreaks published pages: e6561, ISSN: 2167-8359, DOI: 10.7717/peerj.6561	PeerJ 7	2020-04-25
2019	Sandra DÃaz-SÃ¡nchez, AngÃ©lica HernÃ¡ndez-JarguÃn, Alessandra Torina, Isabel G. FernÃ¡ndez de Mera, Valeria Blanda, Santo Caracappa, Christian Gortazar, JosÃ© de la Fuente Characterization of the bacterial microbiota in wild-caught Ixodes ventalloi published pages: 336-343, ISSN: 1877-959X, DOI: 10.1016/j.ttbdis.2018.11.014	Ticks and Tick-borne Diseases 10/2	2020-04-25
2018	N. Jungwirth, C. Puff, K. KÃ¶ster, R. Mischke, H. Meyer, A. Stark, B. Thoma, G. ZÃ¶ller, F. Seehusen, M. Hewicker-Trautwein, A. Beineke, W. BaumgÃ¤rtner, P. Wohlsein Atypical Cowpox Virus Infection in a Series of Cats published pages: 71-76, ISSN: 0021-9975, DOI: 10.1016/j.jcpa.2017.12.003	Journal of Comparative Pathology 158	2020-04-25
2018	Patrick Murigu Kamau Njage Clementine Henri Pimlapas Leekitcharoenphon Michelâ€Yves Mistou Rene S. Hendriksen Tine Hald Machine Learning Methods as a Tool for Predicting Risk of Illness Applying Nextâ€Generation Sequencing Data published pages: , ISSN: 0272-4332, DOI: 10.1111/risa.13239	Risk Analysis 2018	2020-04-25
2019	Rene S. Hendriksen, Patrick Munk, Patrick Njage, Bram van Bunnik, Luke McNally, Oksana Lukjancenko, Timo RÃ¶der, David Nieuwenhuijse, Susanne Karlsmose Pedersen, Jette Kjeldgaard, Rolf S. Kaas, Philip Thomas Lanken Conradsen Clausen, Josef Korbinian Vogt, Pimlapas Leekitcharoenphon, Milou G. M. van de Schans, Tina Zuidema, Ana Maria de Roda Husman, Simon Rasmussen, Bent Petersen, Clara Amid, Guy Cochrane, Thomas Sicheritz-Ponten, Heike Schmitt, Jorge Raul Matheu Alvarez, Awa Aidara-Kane, SÃ¼nje J. Pamp, Ole Lund, Tine Hald, Mark Woolhouse, Marion P. Koopmans, HÃ¥kan Vigre, Thomas Nordahl Petersen, Frank M. Aarestrup Global monitoring of antimicrobial resistance based on metagenomics analyses of urban sewage published pages: , ISSN: 2041-1723, DOI: 10.1038/s41467-019-08853-3	Nature Communications 10/1	2020-04-25
2018	Jochen Kruppa, Wendy K. Jo, Erhard van der Vries, Martin Ludlow, Albert Osterhaus, Wolfgang Baumgaertner, Klaus Jung Virus detection in high-throughput sequencing data without a reference genome of the host published pages: 180-187, ISSN: 1567-1348, DOI: 10.1016/j.meegid.2018.09.026	Infection, Genetics and Evolution 66	2020-04-25
2019	Panagiotis Papadopoulos, Theofilos Papadopoulos, Apostolos S. Angelidis, Charalampos Kotzamanidis, Antonios Zdragas, Anna Papa, George Filioussis, Daniel Sergelidis Prevalence, antimicrobial susceptibility and characterization of Staphylococcus aureus and methicillin-resistant Staphylococcus aureus isolated from dairy industries in north-central and north-eastern Greece published pages: 35-41, ISSN: 0168-1605, DOI: 10.1016/j.ijfoodmicro.2018.11.007	International Journal of Food Microbiology 291	2020-04-25
2019	Anna K. SzafraÅ„ska, Vera Junker, Matthias Steglich, Ulrich NÃ¼bel Rapid cell division of Staphylococcus aureus during colonization of the human nose published pages: , ISSN: 1471-2164, DOI: 10.1186/s12864-019-5604-6	BMC Genomics 20/1	2020-04-25
2018	Isabel G. FernÃ¡ndez de Mera, Valeria Blanda, Alessandra Torina, Mayssaa Fawaz Dabaja, Ali El Romeh, Alejandro Cabezas-Cruz, JosÃ© de la Fuente Identification and molecular characterization of spotted fever group rickettsiae in ticks collected from farm ruminants in Lebanon published pages: 104-108, ISSN: 1877-959X, DOI: 10.1016/j.ttbdis.2017.10.001	Ticks and Tick-borne Diseases 9/1	2020-04-25
2018	Federica Palma, Gerardo Manfreda, Mickael Silva, Antonio Parisi, Dillon O. R. Barker, Eduardo N. Taboada, FrÃ©dÃ©rique Pasquali, Mirko Rossi Genome-wide identification of geographical segregated genetic markers in Salmonella enterica serovar Typhimurium variant 4,[5],12:i:- published pages: , ISSN: 2045-2322, DOI: 10.1038/s41598-018-33266-5	Scientific Reports 8/1	2020-04-25
2019	Anna Rosa Sannella, Yupin Suputtamongkol, Ekkarat Wongsawat, Simone M. CacciÃ² A retrospective molecular study of Cryptosporidium species and genotypes in HIV-infected patients from Thailand published pages: , ISSN: 1756-3305, DOI: 10.1186/s13071-019-3348-4	Parasites & Vectors 12/1	2020-04-25
2018	Boas C L van der Putten, Daniel Remondini, Giovanni Pasquini, Victoria A Janes, SÃ©bastien Matamoros, Constance Schultsz Quantifying the contribution of four resistance mechanisms to ciprofloxacin MIC in Escherichia coli : a systematic review published pages: 298-310, ISSN: 0305-7453, DOI: 10.1093/jac/dky417	Journal of Antimicrobial Chemotherapy 74/2	2020-04-25
2019	Evelyne Picard-Meyer, Veronique Beven, Edouard Hirchaud, CÃ©dric Guillaume, GÃ©rald Larcher, Emmanuelle Robardet, Alexandre Servat, Yannick Blanchard, Florence Cliquet Lleida Bat Lyssavirus isolation in Miniopterus schreibersii in France published pages: 254-258, ISSN: 1863-1959, DOI: 10.1111/zph.12535	Zoonoses and Public Health 66/2	2020-04-25
2019	Patrick Murigu Kamau Njage, Pimlapas Leekitcharoenphon, Tine Hald Improving hazard characterization in microbial risk assessment using next generation sequencing data and machine learning: Predicting clinical outcomes in shigatoxigenic Escherichia coli published pages: 72-82, ISSN: 0168-1605, DOI: 10.1016/j.ijfoodmicro.2018.11.016	International Journal of Food Microbiology 292	2020-04-25
2018	Sara Artigas-JerÃ³nimo, JosÃ© De La Fuente, Margarita Villar Interactomics and tick vaccine development: new directions for the control of tick-borne diseases published pages: 627-635, ISSN: 1478-9450, DOI: 10.1080/14789450.2018.1506701	Expert Review of Proteomics 15/8	2020-04-25
2019	Elmoubasher Farag, Reina Sikkema, Tinka Vinks, Md Islam, Mohamed Nour, Hamad Al-Romaihi, Mohammed Al Thani, Muzzamil Atta, Farhoud Alhajri, Salih Al-Marri, Mohd AlHajri, Chantal Reusken, Marion Koopmans Drivers of MERS-CoV Emergence in Qatar published pages: 22, ISSN: 1999-4915, DOI: 10.3390/v11010022	Viruses 11/1	2020-04-25
2019	R. S. Sikkema, E. A. B. A. Farag, Mazharul Islam, Muzzamil Atta, C. B. E. M. Reusken, Mohd M. Al-Hajri, M. P. G. Koopmans Global status of Middle East respiratory syndrome coronavirus in dromedary camels: a systematic review published pages: , ISSN: 0950-2688, DOI: 10.1017/s095026881800345x	Epidemiology and Infection 147	2020-04-25
2018	Emilio Mordini Vaccines, Apes, and Conspiracy published pages: 55-57, ISSN: 1526-5161, DOI: 10.1080/15265161.2018.1516001	The American Journal of Bioethics 18/10	2020-04-25
2018	Ariane Belka, Mareike Fischer, Anne Pohlmann, Martin Beer, Dirk HÃ¶per LVQ-KNN: Composition-based DNA/RNA binning of short nucleotide sequences utilizing a prototype-based k-nearest neighbor approach published pages: 55-63, ISSN: 0168-1702, DOI: 10.1016/j.virusres.2018.10.002	Virus Research 258	2020-04-25
2018	Kore Schlottau, Leonie Forth, Klemens Angstwurm, Dirk HÃ¶per, Daniel Zecher, Friederike Liesche, Bernd Hoffmann, Victoria Kegel, Daniel Seehofer, Sabine Platen, Bernd Salzberger, Uwe G. Liebert, Hans-Helmut Niller, Barbara Schmidt, Kaspar Matiasek, Markus J. Riemenschneider, Christoph Brochhausen, Bernhard Banas, Lutz Renders, Philipp Moog, Silke Wunderlich, Christian L. Seifert, Ana Barreiros, Axel Rahmel, Jutta Weiss, Dennis Tappe, Christiane Herden, Jonas Schmidt-Chanasit, Martin Schwemmle, Dennis Rubbenstroth, JÃ¼rgen Schlegel, Corinna Pietsch, Donata Hoffmann, Jonathan Jantsch, Martin Beer Fatal Encephalitic Borna Disease Virus 1 in Solid-Organ Transplant Recipients published pages: 1377-1379, ISSN: 0028-4793, DOI: 10.1056/NEJMc1803115	New England Journal of Medicine 379/14	2020-04-25
2018	Carolina dos S. Ribeiro, Marion P. Koopmans, George B. Haringhuizen Threats to timely sharing of pathogen sequence data published pages: pp. 404-406, ISSN: 1095-9203, DOI: 10.1126/science.aau5229	Science Vol. 362, Issue 6413,	2020-04-25
2018	Sam Nooij, Dennis Schmitz, Harry Vennema, Annelies Kroneman, Marion P. G. Koopmans Overview of Virus Metagenomic Classification Methods and Their Biological Applications published pages: , ISSN: 1664-302X, DOI: 10.3389/fmicb.2018.00749	Frontiers in Microbiology 9	2020-04-25
2018	AngÃ©lica HernÃ¡ndez-JarguÃn, Sandra DÃaz-SÃ¡nchez, Margarita Villar, JosÃ© de la Fuente Integrated metatranscriptomics and metaproteomics for the characterization of bacterial microbiota in unfed Ixodes ricinus published pages: 1241-1251, ISSN: 1877-959X, DOI: 10.1016/j.ttbdis.2018.04.020	Ticks and Tick-borne Diseases 9/5	2020-04-25
2018	Matthias Steglich, Julia D. Hofmann, Julia Helmecke, Johannes Sikorski, Cathrin SprÃ¶er, Thomas Riedel, Boyke Bunk, JÃ¶rg Overmann, Meina Neumann-Schaal, Ulrich NÃ¼bel Convergent Loss of ABC Transporter Genes From Clostridioides difficile Genomes Is Associated With Impaired Tyrosine Uptake and p-Cresol Production published pages: , ISSN: 1664-302X, DOI: 10.3389/fmicb.2018.00901	Frontiers in Microbiology 9	2020-04-25
2018	Klaas Dietze, Annika Graaf, Timo Homeier-Bachmann, Christian Grund, Leonie Forth, Anne Pohlmann, Christa Jeske, Mattis Wintermann, Martin Beer, Franz J. Conraths, Timm Harder From low to high pathogenicity-Characterization of H7N7 avian influenza viruses in two epidemiologically linked outbreaks published pages: , ISSN: 1865-1674, DOI: 10.1111/tbed.12906	Transboundary and Emerging Diseases	2020-04-25
2018	Christine Baechlein, Anna Lena Baron, Denise Meyer, Lara Gorriz-Martin, Vanessa Maria Pfankuche, Wolfgang BaumgÃ¤rtner, Susanne Polywka, Sven Peine, Nicole Fischer, JÃ¼rgen Rehage, Paul Becher Further characterization of bovine hepacivirus: Antibody response, course of infection, and host tropism published pages: , ISSN: 1865-1674, DOI: 10.1111/tbed.12999	Transboundary and Emerging Diseases	2020-04-25
2018	Katerina Tsergouli, Elpida Papadopoulou, Katerina Tsioka, Anna Papa Molecular epidemiology of Dobrava-Belgrade virus in Greece published pages: 9-12, ISSN: 1567-1348, DOI: 10.1016/j.meegid.2018.06.007	Infection, Genetics and Evolution 64	2020-04-25
2018	Anna Papa, Hana ZelenÃ¡, Elpida Papadopoulou, Jakub MrÃ¡zek Uukuniemi virus, Czech Republic published pages: 1129-1132, ISSN: 1877-959X, DOI: 10.1016/j.ttbdis.2018.04.011	Ticks and Tick-borne Diseases 9/5	2020-04-25
2017	Ea Zankari, Rosa AllesÃ¸e, Katrine G Joensen, Lina M Cavaco, Ole Lund, Frank M Aarestrup PointFinder: a novel web tool for WGS-based detection of antimicrobial resistance associated with chromosomal point mutations in bacterial pathogens published pages: 2764-2768, ISSN: 0305-7453, DOI: 10.1093/jac/dkx217	Journal of Antimicrobial Chemotherapy 72/10	2020-04-25
2018	Adam Meijer, Corien M Swaan, Martin Voerknecht, Edin Jusic, Sharon van den Brink, Lisa A Wijsman, Bettie CG Voordouw, GÃ© A Donker, Jacqueline Sleven, Wendelien W Dorigo-Zetsma, Sanela Svraka, Michiel van Boven, Manon R Haverkate, Aura Timen, Jaap T van Dissel, Marion PG Koopmans, Theo M Bestebroer, Ron AM Fouchier Case of seasonal reassortant A(H1N2) influenza virus infection, the Netherlands, March 2018 published pages: , ISSN: 1560-7917, DOI: 10.2807/1560-7917.ES.2018.23.15.18-00160	Eurosurveillance 23/15	2020-04-25
2018	F.X. Briand, E. Niqueux, A. Schmitz, E. Hirchaud, H. Quenault, C. AllÃ©e, A. Le Prioux, C. Guillou-Cloarec, K. Ogor, M.O. Le Bras, H. Gares, P. Daniel, A. Fediaevsky, C. Martenot, P. Massin, S. Le Bouquin, Y. Blanchard, N. Eterradossi Emergence and multiple reassortments of French 2015â€“2016 highly pathogenic H5 avian influenza viruses published pages: 208-214, ISSN: 1567-1348, DOI: 10.1016/j.meegid.2018.04.007	Infection, Genetics and Evolution 61	2020-04-25
2018	AmÃ©lie Chastagner, SÃ©verine HervÃ©, Emilie Bonin, StÃ©phane QuÃ©guiner, Edouard Hirchaud, Dinah Henritzi, VÃ©ronique BÃ©ven, StÃ©phane Gorin, Nicolas Barbier, Yannick Blanchard, GaÃ«lle Simon Spatio-temporal distribution and evolution of the A/H1N1 2009 pandemic virus in pigs in France from 2009 to 2017: identification of a potential swine-specific lineage published pages: , ISSN: 0022-538X, DOI: 10.1128/JVI.00988-18	Journal of Virology	2020-04-25
2018	S. DÃaz-SÃ¡nchez, A. HernÃ¡ndez-JarguÃn, A. Torina, I. G. FernÃ¡ndez de Mera, A. Estrada-PeÃ±a, M. Villar, F. La Russa, V. Blanda, J. Vicente, S. Caracappa, C. Gortazar, J. de la Fuente Biotic and abiotic factors shape the microbiota of wild-caught populations of the arbovirus vector Culicoides imicola published pages: , ISSN: 0962-1075, DOI: 10.1111/imb.12526	Insect Molecular Biology	2020-04-25
2018	Laura Becker, Stephan Fuchs, Yvonne Pfeifer, Torsten Semmler, Tim Eckmanns, Gerit Korr, Dagmar Sissolak, Michael Friedrichs, Edith Zill, Mei-Lin Tung, Christian Dohle, Martin Kaase, SÃ¶ren Gatermann, Holger RÃ¼ssmann, Matthias Steglich, Sebastian Haller, Guido Werner Whole Genome Sequence Analysis of CTX-M-15 Producing Klebsiella Isolates Allowed Dissecting a Polyclonal Outbreak Scenario published pages: , ISSN: 1664-302X, DOI: 10.3389/fmicb.2018.00322	Frontiers in Microbiology 9	2020-04-25
2018	Wendy K. Jo, Vanessa M. Pfankuche, Annika Lehmbecker, Byron Martina, Ana Rubio-Garcia, Stefanie Becker, Jochen Kruppa, Klaus Jung, Daniela Klotz, Julia Metzger, Martin Ludlow, Wolfgang BaumgÃ¤rtner, Erhard van der Vries, Albert Osterhaus Association of Batai Virus Infection and Encephalitis in Harbor Seals, Germany, 2016 published pages: 1691-1695, ISSN: 1080-6040, DOI: 10.3201/eid2409.171829	Emerging Infectious Diseases 24/9	2020-04-25
2018	Thijs Kuiken, Mya Breitbart, Martin Beer, Christian Grund, Dirk HÃ¶per, Bernadette van den Hoogen, Jean-Louis H Kerkhoffs, Aloys C M Kroes, Karyna Rosario, Peter van Run, Matthias Schwarz, Sanela Svraka, Jens Teifke, Marion Koopmans Zoonotic Infection With Pigeon Paramyxovirus Type 1 Linked to Fatal Pneumonia published pages: 1037-1044, ISSN: 0022-1899, DOI: 10.1093/infdis/jiy036	The Journal of Infectious Diseases 218/7	2020-04-25
2018	Anna Papa, Filothei Markatou, Helena C. Maltezou, Elpida Papadopoulou, Eirini Terzi, Sarantoula Ventouri, Danai Pervanidou, Sotirios Tsiodras, Efstratios Maltezos Crimean-Congo haemorrhagic fever in a Greek worker returning from Bulgaria, June 2018 published pages: , ISSN: 1560-7917, DOI: 10.2807/1560-7917.ES.2018.23.35.1800432	Eurosurveillance 23/35	2020-04-25
2017	Oude Munnink, Bas B; Phan, My V T; VIZIONS, Consortium; Simmonds, Peter; Koopmans, Marion P G; Kellam, Paul; van der Hoek, Lia; Cotten, Matthew OUP accepted manuscript published pages: , ISSN: 2057-1577, DOI: 10.1093/ve/vex022	Virus Evolution	2020-04-25
2018	Vanessa Pfankuche, Kerstin Hahn, Rogier Bodewes, Florian Hansmann, AndrÃ© Habierski, Ann-Kathrin Haverkamp, Stephanie Pfaender, Stephanie Walter, Christine Baechlein, Alexander Postel, Eike Steinmann, Paul Becher, Albert Osterhaus, Wolfgang BaumgÃ¤rtner, Christina Puff Comparison of Different In Situ Hybridization Techniques for the Detection of Various RNA and DNA Viruses published pages: 384, ISSN: 1999-4915, DOI: 10.3390/v10070384	Viruses 10/7	2020-04-25
2018	David Polo, Julien Schaeffer, Peter Teunis, Vincent Buchet, FranÃ§oise S. Le Guyader Infectivity and RNA Persistence of a Norovirus Surrogate, the Tulane Virus, in Oysters published pages: , ISSN: 1664-302X, DOI: 10.3389/fmicb.2018.00716	Frontiers in Microbiology 9	2020-04-25
2018	Rueshandra Roosenhoff, Erhard van der Vries, Anne van der Linden, Geert van Amerongen, Koert J. Stittelaar, Saskia L. Smits, Martin Schutten, Ron A. M. Fouchier Influenza A/H3N2 virus infection in immunocompromised ferrets and emergence of antiviral resistance published pages: e0200849, ISSN: 1932-6203, DOI: 10.1371/journal.pone.0200849	PLOS ONE 13/7	2020-04-25
2018	Alessandra De Cesare, Federica Palma, Alex Lucchi, Frederique Pasquali, Gerardo Manfreda Microbiological profile of chicken carcasses: A comparative analysis using shotgun metagenomic sequencing published pages: , ISSN: 2239-7132, DOI: 10.4081/ijfs.2018.6923	Italian Journal of Food Safety 7/1	2020-04-25
2018	HÃ¼lya Kaya, Henrik Hasman, Jesper Larsen, Marc Stegger, Thor Bech Johannesen, Rosa Lundbye AllesÃ¸e, Camilla KoldbÃ¦k Lemvigh, Frank MÃ¸ller Aarestrup, Ole Lund, Anders Rhod Larsen SCC mec Finder, a Web-Based Tool for Typing of Staphylococcal Cassette Chromosome mec in Staphylococcus aureus Using Whole-Genome Sequence Data published pages: , ISSN: 2379-5042, DOI: 10.1128/mSphere.00612-17	mSphere 3/1	2020-04-25
2019	Marjolein J Poen, Divya Venkatesh, Theo M Bestebroer, Oanh Vuong, Rachel D Scheuer, Bas B Oude Munnink, Dennis de Meulder, Mathilde Richard, Thijs Kuiken, Marion P G Koopmans, Leon Kelder, Yong-Joo Kim, Youn-Jeong Lee, Mieke Steensels, Benedicte Lambrecht, Adam Dan, Anne Pohlmann, Martin Beer, Vladimir Savic, Ian H Brown, Ron A M Fouchier, Nicola S Lewis Co-circulation of genetically distinct highly pathogenic avian influenza A clade 2.3.4.4 (H5N6) viruses in wild waterfowl and poultry in Europe and East Asia, 2017â€“18 published pages: , ISSN: 2057-1577, DOI: 10.1093/ve/vez004	Virus Evolution 5/1	2020-04-25
2017	Johanne Ahrenfeldt, Carina Skaarup, Henrik Hasman, Anders Gorm Pedersen, Frank MÃ¸ller Aarestrup, Ole Lund Bacterial whole genome-based phylogeny: construction of a new benchmarking dataset and assessment of some existing methods published pages: , ISSN: 1471-2164, DOI: 10.1186/s12864-016-3407-6	BMC Genomics 18/1	2020-04-25
2019	Sasan Fereidouni, Graham L. Freimanis, Mukhit Orynbayev, Paolo Ribeca, John Flannery, Donald P. King, Steffen Zuther, Martin Beer, Dirk HÃ¶per, Aidyn Kydyrmanov, Kobey Karamendin, Richard Kock Mass Die-Off of Saiga Antelopes, Kazakhstan, 2015 published pages: 1169-1176, ISSN: 1080-6040, DOI: 10.3201/eid2506.180990	Emerging Infectious Diseases 25/6	2020-04-25
2019	Johanna Kennedy, Vanessa Maria Pfankuche, Doris Hoeltig, Alexander Postel, Oliver Keuling, Malgorzata Ciurkiewicz, Wolfgang BaumgÃ¤rtner, Paul Becher, Christine Baechlein Genetic variability of porcine pegivirus in pigs from Europe and China and insights into tissue tropism published pages: , ISSN: 2045-2322, DOI: 10.1038/s41598-019-44642-0	Scientific Reports 9/1	2020-04-25
2019	Meg Perry-Duxbury, Job van Exel, Werner Brouwer How to value safety in economic evaluations in health care? A review of applications in different sectors published pages: , ISSN: 1618-7598, DOI: 10.1007/s10198-019-01076-9	The European Journal of Health Economics	2020-04-25
2019	Sergio GarcÃa-FernÃ¡ndez, Martinique Frentrup, Matthias Steglich, Aitor Gonzaga, Marta Cobo, Nieves LÃ³pez-FresneÃ±a, Javier Cobo, MarÃa-Isabel Morosini, Rafael CantÃ³n, Rosa del Campo, Ulrich NÃ¼bel Whole-genome sequencing reveals nosocomial Clostridioides difficile transmission and a previously unsuspected epidemic scenario published pages: , ISSN: 2045-2322, DOI: 10.1038/s41598-019-43464-4	Scientific Reports 9/1	2020-04-25
2019	Anna Papa, Elpida Papadopoulou, Charikleia Chatzixanthouliou, Petros Glouftsios, Styliani Pappa, Danai Pervanidou, Loukas Georgiou Emergence of West Nile virus lineage 2 belonging to the Eastern European subclade, Greece published pages: 1673-1675, ISSN: 0304-8608, DOI: 10.1007/s00705-019-04243-8	Archives of Virology 164/6	2020-04-25
2019	Annika Brinkmann, Andreas Andrusch, Ariane Belka, Claudia Wylezich, Dirk HÃ¶per, Anne Pohlmann, Thomas Nordahl Petersen, Pierrick Lucas, Yannick Blanchard, Anna Papa, Angeliki Melidou, Bas B. Oude Munnink, Jelle Matthijnssens, Ward Deboutte, Richard J. Ellis, Florian Hansmann, Wolfgang BaumgÃ¤rtner, Erhard van der Vries, Albert Osterhaus, Cesare Camma, Iolanda Mangone, Alessio Lorusso, Maurilia Ma Proficiency testing of virus diagnostics based on bioinformatics analysis of simulated in silico high-throughput sequencing datasets published pages: , ISSN: 0095-1137, DOI: 10.1128/jcm.00466-19	Journal of Clinical Microbiology	2020-04-25
2018	Pierrick Lucas, Eric Jouy, Laetitia Le Devendec, Claire de BoissÃ©son, AgnÃ¨s Perrin-Guyomard, Thomas JovÃ©, Yannick Blanchard, Fabrice Touzain, Isabelle Kempf Characterization of plasmids harboring blaCTX-M genes in Escherichia coli from French pigs published pages: 100-106, ISSN: 0378-1135, DOI: 10.1016/j.vetmic.2018.08.005	Veterinary Microbiology 224	2020-04-25
2019	Danielle J. Ingle, Anders GonÃ§alves da Silva, Mary Valcanis, Susan A. Ballard, Torsten Seemann, Amy V. Jennison, Ivan Bastian, Rolf Wise, Martyn D. Kirk, Benjamin P. Howden, Deborah A. Williamson Emergence and divergence of major lineages of Shiga-toxin-producing Escherichia coli in Australia published pages: , ISSN: 2057-5858, DOI: 10.1099/mgen.0.000268	Microbial Genomics 5/5	2020-04-25
2019	Nele Villabruna, Marion P. G. Koopmans, Miranda de Graaf Animals as Reservoir for Human Norovirus published pages: 478, ISSN: 1999-4915, DOI: 10.3390/v11050478	Viruses 11/5	2020-04-25
2019	Danielle J Ingle, Marion Easton, Mary Valcanis, Torsten Seemann, Jason C Kwong, Nicola Stephens, Glen P Carter, Anders GonÃ§alves da Silva, James Adamopoulos, Sarah L Baines, Kathryn E Holt, Eric P F Chow, Christopher K Fairley, Marcus Y Chen, Martyn D Kirk, Benjamin P Howden, Deborah A Williamson Co-circulation of Multidrug-resistant Shigella Among Men Who Have Sex With Men in Australia published pages: , ISSN: 1058-4838, DOI: 10.1093/cid/ciz005	Clinical Infectious Diseases	2020-04-25
2019	JoÃ£o QueirÃ³s, Margarita Villar, AngÃ©lica HernÃ¡ndez-JarguÃn, Vladimir LÃ³pez, Isabel FernÃ¡ndez de Mera, JoaquÃn Vicente, Paulo C. Alves, Christian Gortazar, JosÃ© de la Fuente A metaproteomics approach reveals changes in mandibular lymph node microbiota of wild boar naturally exposed to an increasing trend of Mycobacterium tuberculosis complex infection published pages: 103-112, ISSN: 1472-9792, DOI: 10.1016/j.tube.2018.12.003	Tuberculosis 114	2020-04-25
2019	Serafeim C. Chaintoutis, Elpida Papadopoulou, Angeliki Melidou, Anna Papa, Chrysostomos I. Dovas A PCR-based NGS protocol for whole genome sequencing of West Nile virus lineage 2 directly from biological specimens published pages: , ISSN: 0890-8508, DOI: 10.1016/j.mcp.2019.06.002	Molecular and Cellular Probes	2020-04-25
2019	B.B. Oude Munnink, M. Kik, N.D. de Bruijn, R. Kohl, A. van der Linden, C.B.E.M. Reusken, M. Koopmans Towards high quality real-time whole genome sequencing during outbreaks using Usutu virus as example published pages: 49-54, ISSN: 1567-1348, DOI: 10.1016/j.meegid.2019.04.015	Infection, Genetics and Evolution 73	2020-04-25
2018	Stella Kiambi, Victor M. Corman, Rina Sitawa, Jane Githinji, James Ngoci, Abdullahi S. Ozomata, Emma Gardner, Sophie von Dobschuetz, Subhash Morzaria, Joshua Kimutai, Simon Schroeder, Obadiah Njagi, Piers Simpkin, Gabriel Rugalema, Zelalem Tadesse, Juan Lubroth, Yilma Makonnen, Christian Drosten, Marcel A. MÃ¼ller, Folorunso O. Fasina Detection of distinct MERS-Coronavirus strains in dromedary camels from Kenya, 2017 published pages: 1-4, ISSN: 2222-1751, DOI: 10.1038/s41426-018-0193-z	Emerging Microbes & Infections 7/1	2020-04-25
2019	Fabian K. Berger, Sabine GfrÃ¶rer, SÃ¶ren L. Becker, Rossella Baldan, Daniela Maria Cirillo, Martinique Frentrup, Matthias Steglich, Pit Engling, Ulrich NÃ¼bel, Alexander Mellmann, Markus Bischoff, Barbara GÃ¤rtner, Lutz von MÃ¼ller Hospital outbreak due to Clostridium difficile ribotype 018 (RT018) in Southern Germany published pages: 189-193, ISSN: 1438-4221, DOI: 10.1016/j.ijmm.2019.03.001	International Journal of Medical Microbiology 309/3-4	2020-04-25
2019	Manuela Tietgen, Jan S Kramer, Steffen Brunst, Bardya Djahanschiri, Sonali Wohra, Paul G Higgins, Marko Weidensdorfer, Sara Riedel-Christ, Klaas M Pos, Aitor Gonzaga, Matthias Steglich, Ulrich NÃ¼bel, Ingo Ebersberger, Ewgenij Proschak, Stephan GÃ¶ttig Identification of the novel class D Î²-lactamase OXA-679 involved in carbapenem resistance in Acinetobacter calcoaceticus published pages: 1494-1502, ISSN: 0305-7453, DOI: 10.1093/jac/dkz080	Journal of Antimicrobial Chemotherapy 74/6	2020-04-25
2019	Frederique Pasquali, Federica Palma, Marcello Trevisani, Antonio Parisi, Alex Lucchi, Alessandra De Cesare, Gerardo Manfreda Whole genome sequencing based typing and characterisation of Shiga-toxin producing Escherichia coli strains belonging to O157 and O26 serotypes and isolated in dairy farms published pages: , ISSN: 2239-7132, DOI: 10.4081/ijfs.2018.7673	Italian Journal of Food Safety 7/4	2020-04-25
2018	Arif M. Tanmoy, Emilie Westeel, Katrien De Bruyne, Johan Goris, Alain Rajoharison, Mohammad S. I. Sajib, Alex van Belkum, Samir K. Saha, Florence Komurian-Pradel, Hubert P. Endtz Salmonella enterica Serovar Typhi in Bangladesh: Exploration of Genomic Diversity and Antimicrobial Resistance published pages: , ISSN: 2161-2129, DOI: 10.1128/mbio.02112-18	mBio 9/6	2020-04-25
2019	Anna Papa Diagnostic approaches for Crimean-Congo hemorrhagic fever virus published pages: 531-536, ISSN: 1473-7159, DOI: 10.1080/14737159.2019.1615450	Expert Review of Molecular Diagnostics 19/6	2020-04-25

Are you the coordinator (or a participant) of this project? Plaese send me more information about the "COMPARE" project.

For instance: the website url (it has not provided by EU-opendata yet), the logo, a more detailed description of the project (in plain text as a rtf file or a word file), some pictures (as picture files, not embedded into any word file), twitter account, linkedin page, etc.

Send me an email (fabio@fabiodisconzi.com) and I put them in your project's page as son as possible.

Thanks. And then put a link of this page into your project's website.

The information about "COMPARE" are provided by the European Opendata Portal: CORDIS opendata.