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CompBioMed SIGNED

A Centre of Excellence in Computational Biomedicine

Total Cost €

EC-Contrib. €

Partnership

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Outcomes and
results

CompBioMed project word cloud

Explore the words cloud of the CompBioMed project. It provides you a very rough idea of what is the project "CompBioMed" about.

predicting integral molecularly computationally industrial hpc cardiovascular excellence offers ahead automated lie vast benefits coe patient communities interventions outward performance medicine exemplar outcomes enterprises prospect academic disseminate requiring distributed centre line closely drawn nature multidisciplinary biomedical effect actively computers associate innovative wish models pursued biomedicine extend neuro health treatments professionals engage predicted clinical power multiple combined multiscale smes vision personalised modeling domain arranged heart eight workflows individual computational produces processed predictive coupling decision model holds musculoskeletal train comprised medical powerful codes presenting data hospitals components simulation ensuing

Project "CompBioMed" data sheet

The following table provides information about the project.

Coordinator	UNIVERSITY COLLEGE LONDON Organization address address: GOWER STREET city: LONDON postcode: WC1E 6BT website: n.a. contact info title: n.a. name: n.a. surname: n.a. function: n.a. email: n.a. telephone: n.a. fax: n.a.
Coordinator Country	United Kingdom [UK]
Project website	http://www.compbiomed.eu
Total cost	4˙938˙216 €
EC max contribution	4˙938˙215 € (100%)
Programme	1. H2020-EU.1.4.1.3. (Development, deployment and operation of ICT-based e-infrastructures)
Code Call	H2020-EINFRA-2015-1
Funding Scheme	RIA
Starting year	2016
Duration (year-month-day)	from 2016-10-01 to 2019-09-30

Partnership

Take a look of project's partnership.

#	participants	country	role	EC contrib. [€]
1	UNIVERSITY COLLEGE LONDON UNIVERSITY COLLEGE LONDON Organization address address: GOWER STREET city: LONDON postcode: WC1E 6BT website: n.a. contact info title: n.a. name: n.a. surname: n.a. function: n.a. email: n.a. telephone: n.a. fax: n.a.	UK (LONDON)	coordinator	908˙892.00
2	UNIVERSITEIT VAN AMSTERDAM UNIVERSITEIT VAN AMSTERDAM Organization address address: SPUI 21 city: AMSTERDAM postcode: 1012WX website: www.uva.nl contact info title: n.a. name: n.a. surname: n.a. function: n.a. email: n.a. telephone: n.a. fax: n.a.	NL (AMSTERDAM)	participant	508˙798.00
3	SURFSARA BV SURFSARA BV Organization address address: SCIENCE PARK 140 city: AMSTERDAM postcode: 1098XG website: n.a. contact info title: n.a. name: n.a. surname: n.a. function: n.a. email: n.a. telephone: n.a. fax: n.a.	NL (AMSTERDAM)	participant	495˙950.00
4	THE UNIVERSITY OF SHEFFIELD THE UNIVERSITY OF SHEFFIELD Organization address address: FIRTH COURT WESTERN BANK city: SHEFFIELD postcode: S10 2TN website: www.shef.ac.uk contact info title: n.a. name: n.a. surname: n.a. function: n.a. email: n.a. telephone: n.a. fax: n.a.	UK (SHEFFIELD)	participant	456˙368.00
5	UNIVERSITE DE GENEVE UNIVERSITE DE GENEVE Organization address address: RUE DU GENERAL DUFOUR 24 city: GENEVE postcode: 1211 website: www.unige.ch contact info title: n.a. name: n.a. surname: n.a. function: n.a. email: n.a. telephone: n.a. fax: n.a.	CH (GENEVE)	participant	388˙225.00
6	BARCELONA SUPERCOMPUTING CENTER - CENTRO NACIONAL DE SUPERCOMPUTACION BARCELONA SUPERCOMPUTING CENTER - CENTRO NACIONAL DE SUPERCOMPUTACION Organization address address: Calle Jordi Girona 31 city: BARCELONA postcode: 8034 website: www.bsc.es contact info title: n.a. name: n.a. surname: n.a. function: n.a. email: n.a. telephone: n.a. fax: n.a.	ES (BARCELONA)	participant	372˙076.00
7	THE UNIVERSITY OF EDINBURGH THE UNIVERSITY OF EDINBURGH Organization address address: OLD COLLEGE, SOUTH BRIDGE city: EDINBURGH postcode: EH8 9YL website: www.ed.ac.uk contact info title: n.a. name: n.a. surname: n.a. function: n.a. email: n.a. telephone: n.a. fax: n.a.	UK (EDINBURGH)	participant	335˙831.00
8	CBK SCI CON LIMITED CBK SCI CON LIMITED Organization address address: 97 Tottenham Court Road, The Network building city: London postcode: W1T 4TP website: n.a. contact info title: n.a. name: n.a. surname: n.a. function: n.a. email: n.a. telephone: n.a. fax: n.a.	UK (London)	participant	277˙143.00
9	THE CHANCELLOR, MASTERS AND SCHOLARS OF THE UNIVERSITY OF OXFORD THE CHANCELLOR, MASTERS AND SCHOLARS OF THE UNIVERSITY OF OXFORD Organization address address: WELLINGTON SQUARE UNIVERSITY OFFICES city: OXFORD postcode: OX1 2JD website: www.ox.ac.uk contact info title: n.a. name: n.a. surname: n.a. function: n.a. email: n.a. telephone: n.a. fax: n.a.	UK (OXFORD)	participant	264˙955.00
10	LIFETEC GROUP BV LIFETEC GROUP BV Organization address address: KENNEDYPLEIN 11 city: EINDHOVEN postcode: 5611 ZS website: n.a. contact info title: n.a. name: n.a. surname: n.a. function: n.a. email: n.a. telephone: n.a. fax: n.a.	NL (EINDHOVEN)	participant	247˙987.00
11	UNIVERSIDAD POMPEU FABRA UNIVERSIDAD POMPEU FABRA Organization address address: PLACA DE LA MERCE, 10-12 city: BARCELONA postcode: 8002 website: www.upf.edu contact info title: n.a. name: n.a. surname: n.a. function: n.a. email: n.a. telephone: n.a. fax: n.a.	ES (BARCELONA)	participant	191˙750.00
12	BULL SAS BULL SAS Organization address address: RUE JEAN JAURES 68 city: LES CLAYES SOUS BOIS postcode: 78340 website: www.bull.com contact info title: n.a. name: n.a. surname: n.a. function: n.a. email: n.a. telephone: n.a. fax: n.a.	FR (LES CLAYES SOUS BOIS)	participant	138˙043.00
13	EVOTEC (UK) LIMITED EVOTEC (UK) LIMITED Organization address address: 114 INNOVATION DRIVE, MILTON PARK MILTON city: ABINGDON OXFORDSHIRE postcode: OX14 4RZ website: n.a. contact info title: n.a. name: n.a. surname: n.a. function: n.a. email: n.a. telephone: n.a. fax: n.a.	UK (ABINGDON OXFORDSHIRE)	participant	131˙287.00
14	JANSSEN PHARMACEUTICA NV JANSSEN PHARMACEUTICA NV Organization address address: TURNHOUTSEWEG 30 city: BEERSE postcode: 2340 website: www.janssenpharmaceutica.be contact info title: n.a. name: n.a. surname: n.a. function: n.a. email: n.a. telephone: n.a. fax: n.a.	BE (BEERSE)	participant	125˙025.00
15	ACELLERA LABS SL ACELLERA LABS SL Organization address address: C/ DELS PINZON 19 2-4 city: BARCELONA postcode: 8003 website: n.a. contact info title: n.a. name: n.a. surname: n.a. function: n.a. email: n.a. telephone: n.a. fax: n.a.	ES (BARCELONA)	participant	95˙881.00
16	EVOTEC AG* EVOTEC AG* Organization address address: ESSENER BOGEN 7 city: HAMBURG postcode: 22419 website: n.a. contact info title: n.a. name: n.a. surname: n.a. function: n.a. email: n.a. telephone: n.a. fax: n.a.	DE (HAMBURG)	participant	0.00

Map

Project objective

This Centre of Excellence will advance the role of computationally based modelling and simulation within biomedicine. Three related user communities lie at the heart of the CoE: academic, industrial and clinical researchers who all wish to build, develop and extend such capabilities in line with the increasing power of high performance computers. Three distinct exemplar research areas will be pursued: cardiovascular, molecularly-based and neuro-musculoskeletal medicine. Predictive computational biomedicine involves applications that are comprised of multiple components, arranged as far as possible into automated workflows in which data is taken, from an individual patient, processed, and combined into a model which produces predicted health outcomes. Many of the models are multiscale, requiring the coupling of two or more high performance codes. Computational biomedicine holds out the prospect of predicting the effect of personalised medical treatments and interventions ahead of carrying them out, with all the ensuing benefits. Indeed, in some cases, it is already doing so today. The CoE presents a powerful consortium of partners and has an outward facing nature and will actively train, disseminate and engage with these user communities across Europe and beyond. Because this field is new and growing rapidly, it offers numerous innovative opportunities. There are three SMEs and three enterprises within the project, as well as eight associate partners drawn from across the biomedical sector, who are fully aware of the vast potential of HPC in this domain. We shall work with them to advance the exploitation of HPC and will engage closely with medical professionals through our partner hospitals in order to establish modeling and simulation as an integral part of clinical decision making. Our CoE is thus user-driven, integrated, multidisciplinary, and distributed; presenting a vision that is in line with the Work Programme.

Deliverables

List of deliverables.
Training Plan	Documents, reports	2020-02-25 08:21:39
Report on computing and data needs of the biomedical community	Documents, reports	2020-02-25 08:21:38
Website Release	Websites, patent fillings, videos etc.	2020-02-25 08:21:39
Release of Community Software Repository	Websites, patent fillings, videos etc.	2020-02-25 08:21:37
Report on existing solutions in support of biomedical applications	Documents, reports	2020-02-25 08:21:39
Quality Assurance Plan	Documents, reports	2020-02-25 08:21:38
Report on access mechanisms to HPC systems	Documents, reports	2020-02-25 08:21:38
Project Handbook	Documents, reports	2020-02-25 08:21:37
Report on Workflow system provision	Documents, reports	2020-02-25 08:21:39
Deployment of project informatics platform	Websites, patent fillings, videos etc.	2020-02-25 08:21:39
First report on training and dissemination	Documents, reports	2020-02-25 08:21:39
Report on dissemination and training material	Documents, reports	2020-02-25 08:21:39
Interim Report on Industrial and cPPP Collaboration	Documents, reports	2020-02-25 08:21:39
Report on Application Software Readiness and Fast Track Exploitation	Documents, reports	2020-02-25 08:21:39
Innovation Plan	Documents, reports	2020-02-25 08:21:39
Dissemination Action Plan	Documents, reports	2020-02-25 08:21:39
Data Management Plan	Open Research Data Pilot	2020-02-25 08:21:39

Take a look to the deliverables list in detail: detailed list of CompBioMed deliverables.

Publications

List of publications.
year	authors and title	journal	last update
2019	B. J. M. van Rooij, G. ZÃ¡vodszky, V. W. Azizi Tarksalooyeh, A. G. Hoekstra Identifying the start of a platelet aggregate by the shear rate and the cell-depleted layer published pages: 20190148, ISSN: 1742-5689, DOI: 10.1098/rsif.2019.0148	Journal of The Royal Society Interface 16/159	2020-02-25

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The information about "COMPBIOMED" are provided by the European Opendata Portal: CORDIS opendata.