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MICROWINE SIGNED

MICROWINE - Microbial metagenomics and the modern wine industry

Total Cost €

EC-Contrib. €

Partnership

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Outcomes and
results

MICROWINE project word cloud

Explore the words cloud of the MICROWINE project. It provides you a very rough idea of what is the project "MICROWINE" about.

interplay action nutrients progress 220 plants collected constructed amplicon health helping lies shotgun poorly heart vinification diverse esr genomic revolutionised esrs modern roles driving secondments play transfer geochemistry fermentation metabolomics wine computation transform microwine maximise microbiology dna combining array flavours tightly viniculture marie multiple curie globally network characterise microorganisms protection community billion interconnected powerful strength close disciplines forefront aromas biology characterised power industry pathogens plant deep computational conferring theme sequencing samples stages benefit training actions generation host academic microbes soil cosupervision metagenomic interdisciplinary scientists cohort train metadata scientific microbiological anticipate 15 nutrition techniques microbial worth

Project "MICROWINE" data sheet

The following table provides information about the project.

Coordinator	AARHUS UNIVERSITET Organization address address: NORDRE RINGGADE 1 city: AARHUS C postcode: 8000 website: www.au.dk contact info title: n.a. name: n.a. surname: n.a. function: n.a. email: n.a. telephone: n.a. fax: n.a.
Coordinator Country	Denmark [DK]
Project website	http://microwine.eu/
Total cost	3˙945˙597 €
EC max contribution	3˙945˙597 € (100%)
Programme	1. H2020-EU.1.3.1. (Fostering new skills by means of excellent initial training of researchers)
Code Call	H2020-MSCA-ITN-2014
Funding Scheme	MSCA-ITN-ETN
Starting year	2015
Duration (year-month-day)	from 2015-01-01 to 2018-12-31

Partnership

Take a look of project's partnership.

#	participants	country	role	EC contrib. [€]
1	AARHUS UNIVERSITET AARHUS UNIVERSITET Organization address address: NORDRE RINGGADE 1 city: AARHUS C postcode: 8000 website: www.au.dk contact info title: n.a. name: n.a. surname: n.a. function: n.a. email: n.a. telephone: n.a. fax: n.a.	DK (AARHUS C)	coordinator	580˙163.00
2	KOBENHAVNS UNIVERSITET KOBENHAVNS UNIVERSITET Organization address address: NORREGADE 10 city: KOBENHAVN postcode: 1165 website: www.ku.dk contact info title: n.a. name: n.a. surname: n.a. function: n.a. email: n.a. telephone: n.a. fax: n.a.	DK (KOBENHAVN)	participant	580˙163.00
3	DANMARKS TEKNISKE UNIVERSITET DANMARKS TEKNISKE UNIVERSITET Organization address address: ANKER ENGELUNDSVEJ 1 BYGNING 101 A city: KGS LYNGBY postcode: 2800 website: www.dtu.dk contact info title: n.a. name: n.a. surname: n.a. function: n.a. email: n.a. telephone: n.a. fax: n.a.	DK (KGS LYNGBY)	participant	290˙081.00
4	THE UNIVERSITY OF WARWICK THE UNIVERSITY OF WARWICK Organization address address: Kirby Corner Road - University House city: COVENTRY postcode: CV4 8UW website: www.warwick.ac.uk contact info title: n.a. name: n.a. surname: n.a. function: n.a. email: n.a. telephone: n.a. fax: n.a.	UK (COVENTRY)	participant	273˙287.00
5	INSTITUT NATIONAL DE RECHERCHE ENINFORMATIQUE ET AUTOMATIQUE INSTITUT NATIONAL DE RECHERCHE ENINFORMATIQUE ET AUTOMATIQUE Organization address address: DOMAINE DE VOLUCEAU ROCQUENCOURT city: LE CHESNAY CEDEX postcode: 78153 website: www.inria.fr contact info title: n.a. name: n.a. surname: n.a. function: n.a. email: n.a. telephone: n.a. fax: n.a.	FR (LE CHESNAY CEDEX)	participant	262˙875.00
6	INSTITUT NATIONAL DE RECHERCHE POUR L'AGRICULTURE, L'ALIMENTATION ET L'ENVIRONNEMENT INSTITUT NATIONAL DE RECHERCHE POUR L'AGRICULTURE, L'ALIMENTATION ET L'ENVIRONNEMENT Organization address address: Rue De L'Universite 147 city: PARIS CEDEX 07 postcode: 75338 website: www.inra.fr contact info title: n.a. name: n.a. surname: n.a. function: n.a. email: n.a. telephone: n.a. fax: n.a.	FR (PARIS CEDEX 07)	participant	262˙875.00
7	UNIVERSITE DE BORDEAUX UNIVERSITE DE BORDEAUX Organization address address: PLACE PEY BERLAND 35 city: BORDEAUX postcode: 33000 website: www.nouvelle-univ-bordeaux.fr contact info title: n.a. name: n.a. surname: n.a. function: n.a. email: n.a. telephone: n.a. fax: n.a.	FR (BORDEAUX)	participant	262˙875.00
8	STICHTING VU STICHTING VU Organization address address: DE BOELELAAN 1105 city: AMSTERDAM postcode: 1081 HV website: www.vu.nl contact info title: n.a. name: n.a. surname: n.a. function: n.a. email: n.a. telephone: n.a. fax: n.a.	NL (AMSTERDAM)	participant	255˙374.00
9	MINISTERIUM FUER UMWELT, LANDWIRTSCHAFT, ERNAEHRUNG, WEINBAU UND FORSTEN RHEINLAND- PFALZ MINISTERIUM FUER UMWELT, LANDWIRTSCHAFT, ERNAEHRUNG, WEINBAU UND FORSTEN RHEINLAND- PFALZ Organization address address: KAISER-FRIEDRICH-STRASSE 1 city: MAINZ postcode: 55116 website: n.a. contact info title: n.a. name: n.a. surname: n.a. function: n.a. email: n.a. telephone: n.a. fax: n.a.	DE (MAINZ)	participant	249˙216.00
10	UNIVERSIDAD DE ZARAGOZA UNIVERSIDAD DE ZARAGOZA Organization address address: CALLE PEDRO CERBUNA 12 city: ZARAGOZA postcode: 50009 website: www.unizar.es contact info title: n.a. name: n.a. surname: n.a. function: n.a. email: n.a. telephone: n.a. fax: n.a.	ES (ZARAGOZA)	participant	247˙872.00
11	INSTITUTO SUPERIOR DE AGRONOMIA INSTITUTO SUPERIOR DE AGRONOMIA Organization address address: TAPADA DA AJUDA city: LISBOA postcode: 1349 017 website: http://www.isa.ulisboa.pt contact info title: n.a. name: n.a. surname: n.a. function: n.a. email: n.a. telephone: n.a. fax: n.a.	PT (LISBOA)	participant	238˙356.00
12	UNIVERSIDADE CATOLICA PORTUGUESA UNIVERSIDADE CATOLICA PORTUGUESA Organization address address: PALMA DE CIMA city: LISBOA postcode: 1649 023 website: www.ucp.pt contact info title: n.a. name: n.a. surname: n.a. function: n.a. email: n.a. telephone: n.a. fax: n.a.	PT (LISBOA)	participant	238˙356.00
13	UNIVERSIDAD NACIONAL DE LA PLATA UNIVERSIDAD NACIONAL DE LA PLATA Organization address address: CALLE 7 776 city: LA PLATA postcode: 1900 website: n.a. contact info title: n.a. name: n.a. surname: n.a. function: n.a. email: n.a. telephone: n.a. fax: n.a.	AR (LA PLATA)	participant	204˙096.00
14	Agrarian Research and Development Center Agrarian Research and Development Center Organization address address: Didi Gighomi, 3 Mkr, Block 8, Fl. 56. city: Tbilisi postcode: 131 website: n.a. contact info title: n.a. name: n.a. surname: n.a. function: n.a. email: n.a. telephone: n.a. fax: n.a.	GE (Tbilisi)	partner	0.00
15	Ansilta S.A. Ansilta S.A. Organization address address: Calle 2 No. 80 city: La Plata postcode: 1900 website: n.a. contact info title: n.a. name: n.a. surname: n.a. function: n.a. email: n.a. telephone: n.a. fax: n.a.	AR (La Plata)	partner	0.00
16	Biodiscovery, LLC Biodiscovery, LLC Organization address address: 5840 Interface dr. city: ann arbor postcode: 48103 website: n.a. contact info title: n.a. name: n.a. surname: n.a. function: n.a. email: n.a. telephone: n.a. fax: n.a.	US (ann arbor)	partner	0.00
17	CHR. HANSEN A/S CHR. HANSEN A/S Organization address address: BOEGE ALLE 10-12 city: HOERSHOLM postcode: 2970 website: www.chr-hansen.com contact info title: n.a. name: n.a. surname: n.a. function: n.a. email: n.a. telephone: n.a. fax: n.a.	DK (HOERSHOLM)	partner	0.00
18	CURTIN UNIVERSITY OF TECHNOLOGY CURTIN UNIVERSITY OF TECHNOLOGY Organization address address: GPO BOX U1987 city: PERTH postcode: 6845 website: n.a. contact info title: n.a. name: n.a. surname: n.a. function: n.a. email: n.a. telephone: n.a. fax: n.a.	AU (PERTH)	partner	0.00
19	Screenwood, LDA Screenwood, LDA Organization address address: Rua do Pinhal, nº 48 city: Almeirim postcode: 2080-110 website: n.a. contact info title: n.a. name: n.a. surname: n.a. function: n.a. email: n.a. telephone: n.a. fax: n.a.	PT (Almeirim)	partner	0.00
20	THE REGENTS OF THE UNIVERSITY OF CALIFORNIA THE REGENTS OF THE UNIVERSITY OF CALIFORNIA Organization address address: FRANKLIN STREET 1111, 12 FLOOR city: OAKLAND CA postcode: 94607 website: http://www.universityofcalifornia.edu/ contact info title: n.a. name: n.a. surname: n.a. function: n.a. email: n.a. telephone: n.a. fax: n.a.	US (OAKLAND CA)	partner	0.00
21	UNIVERSIDAD NACIONAL DE QUILMES UNIVERSIDAD NACIONAL DE QUILMES Organization address address: ROQUE SAENZ PENA 352 city: BERNAL postcode: B1876BXD website: www.unq.edu.ar contact info title: n.a. name: n.a. surname: n.a. function: n.a. email: n.a. telephone: n.a. fax: n.a.	AR (BERNAL)	partner	0.00

Map

Project objective

A diverse, complex, and poorly characterised community of microorganisms lies at the heart of the wine – an industry worth over €220 billion globally. These microorganisms play key roles at all stages of the viniculture and vinification processes, from helping plants access nutrients from the soil, driving their health through protection against pathogens, to fermentation processes that transform the must into wine with its complex array of aromas and flavours. Given this importance, an improved understanding of the microbial community and its interplay will have significant effects on the industry. In recent years, 'Next Generation' DNA sequencing has revolutionised many areas of biology, including microbiology, through conferring the ability to characterise microbes on the deep community scale, through both ’shotgun’ and ’deep amplicon’ sequencing approaches. To exploit this power for the benefit of the wine industry, we propose MICROWINE, a 15 ESR Marie Curie Actions European Training Network. The network is constructed as a close collaboration between industry and academic partners, around the theme of the microbial community’s role in the wine production process. Through combining microbial metagenomic sequencing with powerful computation analyses, with metadata generated using techniques such as metabolomics and geochemistry, we will study the action of microbes from the plant protection and nutrition, through to wine fermentation process, using samples collected from both Europe and beyond. We will further train the ESRs across a wide range of relevant disciplines, and maximise information transfer through multiple host and academic-industry cosupervision and secondments. In this way, we anticipate contributing to the strength and scientific progress of the wine industry through training of a cohort of leading, interdisciplinary and tightly interconnected scientists at the forefront of modern microbiological, genomic, computational and related techniques.

Deliverables

List of deliverables.
PhD theses submission	Other	2020-04-22 23:14:24
Training event 5	Other	2020-04-22 23:14:23
Training event 7	Documents, reports	2020-04-22 23:14:24
Publications for each WP (WP3-WP5)	Other	2020-04-22 23:14:24
Training event 6	Other	2020-04-22 23:14:23
Training event 2	Other	2020-04-22 23:14:22
Training events 3	Other	2020-04-22 23:14:22
Training events 1	Other	2020-04-22 23:14:22
Training events 4	Other	2020-04-22 23:14:22

Take a look to the deliverables list in detail: detailed list of MICROWINE deliverables.

Publications

List of publications.
year	authors and title	journal	last update
2019	Giovanni Del Frari Frontiers in the control of pathogenic fungi associated with the esca disease complex published pages: , ISSN: , DOI:		2020-04-22
2019	Franziska Klincke, Martin Abel-Kistrup, Sofie Maria Gilberte Saerens, Simon Rasmussen Analysing complex metagenomic data with MicroWineBar published pages: , ISSN: , DOI: 10.1101/742684	Biorxiv	2020-04-22
2019	Giovanni Del Frari, Alex Gobbi, Marie RÃ¸nne Aggerbeck, Helena Oliveira, Lars Hestbjerg Hansen, Ricardo Boavida Ferreira Characterization of the Wood Mycobiome of Vitis vinifera in a Vineyard Affected by Esca. Spatial Distribution of Fungal Communities and Their Putative Relation With Leaf Symptoms published pages: , ISSN: 1664-462X, DOI: 10.3389/fpls.2019.00910	Frontiers in Plant Science 10	2020-04-22
2019	Ifigeneia Kyrkou, Alexander Byth Carstens, Lea Ellegaard-Jensen, Witold Kot, Athanasios Zervas, Amaru Miranda Djurhuus, Horst Neve, Martin Hansen, Lars Hestbjerg Hansen Expanding the Diversity of Myoviridae Phages Infecting Lactobacillus plantarumâ€”A Novel Lineage of Lactobacillus Phages Comprising Five New Members published pages: 611, ISSN: 1999-4915, DOI: 10.3390/v11070611	Viruses 11/7	2020-04-22
2018	GioVAnni DEL FRARI, JoaÌƒo COSTA, HeLenA OLIVEIRA and RiCARdo BOAVIDA FERREIRA Endotherapy of infected grapevine cuttings for the control of Phaeomoniella chlamydospora and Phaeoacremonium minimum published pages: , ISSN: 1593-2095, DOI: 10.14601/phytopathol_mediterr-23515	Phytopathologia Mediterranea	2020-04-22
2019	Chrats Melkonian, Willi Gottstein, Sonja Blasche, Yongkyu Kim, Martin Abel-Kistrup, Hentie Swiegers, Sofie Saerens, Nathalia Edwards, Kiran R. Patil, Bas Teusink, Douwe Molenaar Finding Functional Differences Between Species in a Microbial Community: Case Studies in Wine Fermentation and Kefir Culture published pages: , ISSN: 1664-302X, DOI: 10.3389/fmicb.2019.01347	Frontiers in Microbiology 10	2020-04-22
2018	Ingrid Collombel Post-alcoholic fermentation micro-ecology of wines: the role of phenolic composition and the effects on quality published pages: , ISSN: , DOI:		2020-04-22
2018	GobbiÂ Alex,Â KyrkouÂ Ifigeneia,Â FilippiÂ Elisa,Â Ellegaard-JensenÂ Lea,Â Hansen LarsÂ Hestbjerg Seasonal microbial dynamics on grapevine leaves under biocontrol and copper fungicide treatments published pages: , ISSN: , DOI: 10.1101/523977	Bioxriv	2020-04-22
2019	InÃ¨s Oliveira; Vicente Ferreira Modulating Fermentative, Varietal and Aging Aromas of Wine Using non-Saccharomyces Yeasts in a Sequential Inoculation Approach published pages: 1-23, ISSN: 2076-2607, DOI: 10.3390/microorganisms7060164	Microorganisms 12 per year	2020-04-22
2019	Ingrid Collombel, Francisco Campos, Tim Hogg Changes in the Composition of the Lactic Acid Bacteria Behavior and the Diversity of Oenococcus oeni Isolated from Red Wines Supplemented with Selected Grape Phenolic Compounds published pages: 1, ISSN: 2311-5637, DOI: 10.3390/fermentation5010001	Fermentation 5/1	2020-04-22
2019	Marc P. Lorentzen, Hugo Campbell-Sills, Tue S. Jorgensen, Tue K. Nielsen, Monika Coton, Emmanuel Coton, Lars Hansen, Patrick M. Lucas Expanding the biodiversity of Oenococcus oeni through comparative genomics of apple cider and kombucha strains published pages: , ISSN: 1471-2164, DOI: 10.1186/s12864-019-5692-3	BMC Genomics 20/1	2020-04-22
2019	Ines Pereira Biscaia de Oliveira Contribution of wine microorganisms to the aroma composition of wine and its sensory impact published pages: , ISSN: , DOI:		2020-04-22
2019	Alex Gobbi Exploring the molecular basis of microbial wine-terroir published pages: , ISSN: , DOI:	PhD thesis	2020-04-22
2019	Alex Gobbi, Rui G. Santini, Elisa Filippi, Lea Ellegaard-Jensen, Carsten S. Jacobsen, Lars H. Hansen Quantitative and qualitative evaluation of the impact of the G2 enhancer, bead sizes and lysing tubes on the bacterial community composition during DNA extraction from recalcitrant soil core samples based on community sequencing and qPCR published pages: e0200979, ISSN: 1932-6203, DOI: 10.1371/journal.pone.0200979	PLOS ONE 14/4	2020-04-22
2019	Kimmo SirÃ©n, Sarah Siu Tze Mak, Chrats Melkonian, Christian CarÃ¸e, Jan Hendrik Swiegers, Douwe Molenaar, Ulrich Fischer, M. Thomas P. Gilbert Taxonomic and Functional Characterization of the Microbial Community During Spontaneous in vitro Fermentation of Riesling Must published pages: , ISSN: 1664-302X, DOI: 10.3389/fmicb.2019.00697	Frontiers in Microbiology 10	2020-04-22
2019	Hsiao-Lei Liu Grape Evolution in the Human Environment published pages: , ISSN: , DOI:	PhD Thesis	2020-04-22
2019	MÃ³nica Oyuela Aguilar Analysis of grape wine microbiota from different wine producing regions and thier plant growth promoting properties published pages: , ISSN: , DOI:	PhD Thesis	2020-04-22
2019	Lorentzen, Marc Lucas, Patrick Distribution of Oenococcus oeni populations in natural habitats published pages: 0175-7598/2937-2, ISSN: 1432-0614, DOI: 10.1007/s00253-019-09689-z	Applied Microbiolology and Biotechnology 103	2020-04-22
2019	Franziska Klinke Metagenomics in wine fermentation published pages: , ISSN: , DOI:	PhD Thesis	2020-04-22
2019	Marc Lorentzen DiversitÃ© et caractÃ©ristiques gÃ©nomiques d\'Oenococcus oeni published pages: , ISSN: , DOI:	PhD Thesis	2020-04-22
2019	Taneli Pusa, Martin Wannagat, Marie-France Sagot Metabolic Games published pages: , ISSN: 2297-4687, DOI: 10.3389/fams.2019.00018	Frontiers in Applied Mathematics and Statistics 5	2020-04-22
2019	Kimmo SirÃ©n, Sarah Siu Tze Mak, Ulrich Fischer, Lars Hestbjerg Hansen, M Thomas P Gilbert Multi-omics and potential applications in wine production published pages: 172-178, ISSN: 0958-1669, DOI: 10.1016/j.copbio.2018.11.014	Current Opinion in Biotechnology 56	2020-04-22
2018	Ifigeneia Kyrkou Control of Bacteria for Sustainable Viticulture and Vinification Practices published pages: , ISSN: , DOI:		2020-04-22
2018	Ifigeneia Kyrkou, Taneli Pusa, Lea Ellegaard-Jensen, Marie-France Sagot, Lars Hestbjerg Hansen Pierce\'s Disease of Grapevines: A Review of Control Strategies and an Outline of an Epidemiological Model published pages: , ISSN: 1664-302X, DOI: 10.3389/fmicb.2018.02141	Frontiers in Microbiology 9	2020-04-22
2019	Kimmo SirÃ©n, Ulrich Fischer, Jochen Vestner Automated supervised learning pipeline for non-targeted GC-MS data analysis published pages: 100005, ISSN: 2590-1346, DOI: 10.1016/j.acax.2019.100005	Analytica Chimica Acta: X 1	2020-04-22
2019	Henri Taneli Pusa Mathematical modelling of the impacts of environment using metabolic networks and game theory published pages: , ISSN: , DOI:	PhD Thesis	2020-04-22
2019	Kimmo SirÃ©n Multi-omics Methods to unravel Microbial Diversity in Fermentation of Riesling Wines published pages: , ISSN: , DOI:	PhD Thesis	2020-04-22
2018	Prashant Singh, Sylvain Santoni, Patrice This, Jean-Pierre PÃ©ros Genotype-Environment Interaction Shapes the Microbial Assemblage in Grapevineâ€™s Phyllosphere and Carposphere: An NGS Approach published pages: 96, ISSN: 2076-2607, DOI: 10.3390/microorganisms6040096	Microorganisms 6/4	2020-04-22
2018	Prashant Singh, Alex Gobbi, Sylvain Santoni, Lars H Hansen, Patrice This, Jean-Pierre PÃ©ros Assessing the impact of plant genetic diversity in shaping the microbial community structure of Vitis vinifera phyllosphere in the Mediterranean published pages: 35-46, ISSN: 2155-3769, DOI: 10.1080/21553769.2018.1552628	Frontiers in Life Science 11/1	2020-04-22
2018	Prashant Singh Microbial Assemblage in Grapevine\'s Phyllosphere: Who is the driver ? published pages: , ISSN: , DOI:		2020-04-22
2018	Sarah ST Mak Riesling, ferments, microbes âˆ’The development and application of NGS tools in the context of winemaking published pages: , ISSN: , DOI:	PhD Thesis	2020-04-22
2019	Lorentzen, Marc Lucas, Patrick Distribution of Oenococcus oeni populations in natural habitats published pages: 0175-7598/2937-2, ISSN: 1432-0614, DOI: 10.1007/s00253-019-09689-z	Applied Microbiolology and Biotechnology 103	2020-04-22
2017	Sarah Siu Tze Mak, Shyam Gopalakrishnan, Christian CarÃ¸e, Chunyu Geng, Shanlin Liu, Mikkel-Holger S Sinding, Lukas F K Kuderna, Wenwei Zhang, Shujin Fu, Filipe G Vieira, Mietje GermonprÃ©, HervÃ© Bocherens, Sergey Fedorov, Bent Petersen, Thomas Sicheritz-PontÃ©n, Tomas Marques-Bonet, Guojie Zhang, Hui Jiang, M Thomas P Gilbert Comparative performance of the BGISEQ-500 vs Illumina HiSeq2500 sequencing platforms for palaeogenomic sequencing published pages: 1-13, ISSN: 2047-217X, DOI: 10.1093/gigascience/gix049	GigaScience 6/8	2020-04-22
2016	Elisa Salvetti, Stefano Campanaro, Ilenia Campedelli, Fabio Fracchetti, Alex Gobbi, Giovanni Battista Tornielli, Sandra Torriani, Giovanna E. Felis Whole-Metagenome-Sequencing-Based Community Profiles of Vitis vinifera L. cv. Corvina Berries Withered in Two Post-harvest Conditions published pages: , ISSN: 1664-302X, DOI: 10.3389/fmicb.2016.00937	Frontiers in Microbiology 7	2020-04-22

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