Explore the words cloud of the OpenRiskNet project. It provides you a very rough idea of what is the project "OpenRiskNet" about.
The following table provides information about the project.
Coordinator |
EDELWEISS CONNECT GMBH
Organization address contact info |
Coordinator Country | Switzerland [CH] |
Project website | https://openrisknet.org/ |
Total cost | 2˙999˙112 € |
EC max contribution | 2˙999˙112 € (100%) |
Programme |
1. H2020-EU.1.4.1.3. (Development, deployment and operation of ICT-based e-infrastructures) |
Code Call | H2020-EINFRA-2016-1 |
Funding Scheme | RIA |
Starting year | 2016 |
Duration (year-month-day) | from 2016-12-01 to 2019-11-30 |
Take a look of project's partnership.
# | ||||
---|---|---|---|---|
1 | EDELWEISS CONNECT GMBH | CH (BASEL) | coordinator | 621˙875.00 |
2 | UNIVERSITEIT MAASTRICHT | NL (MAASTRICHT) | participant | 460˙250.00 |
3 | INFORMATICS MATTERS LIMITED | UK (KIDLINGTON) | participant | 318˙750.00 |
4 | UPPSALA UNIVERSITET | SE (UPPSALA) | participant | 309˙500.00 |
5 | JOHANNES GUTENBERG-UNIVERSITAT MAINZ | DE (MAINZ) | participant | 290˙000.00 |
6 | THE UNIVERSITY OF BIRMINGHAM | UK (BIRMINGHAM) | participant | 243˙500.00 |
7 | FUNDACIO CENTRE DE REGULACIO GENOMICA | ES (BARCELONA) | participant | 181˙875.00 |
8 | NATIONAL TECHNICAL UNIVERSITY OF ATHENS - NTUA | EL (ATHINA) | participant | 180˙500.00 |
9 | FRAUNHOFER GESELLSCHAFT ZUR FOERDERUNG DER ANGEWANDTEN FORSCHUNG E.V. | DE (MUNCHEN) | participant | 149˙137.00 |
10 | STICHTING VU | NL (AMSTERDAM) | participant | 127˙475.00 |
11 | INSTITUT NATIONAL DE L ENVIRONNEMENT ET DES RISQUES INERIS | FR (VERNEUIL EN HALATTE) | participant | 116˙250.00 |
12 | MEDIZINISCHE UNIVERSITAT INNSBRUCK | AT (INNSBRUCK) | participant | 0.00 |
Toxicology and risk assessment are undergoing a paradigm shift, from a phenomenological to a mechanistic discipline based on in vitro and in silico approaches that represent an important alternative to classical animal testing applied to the evaluation of chronic and systemic toxicity risks. Large databases and highly sophisticated methods, algorithms and tools are available for different tasks such as hazard prediction, toxicokinetics, and in vitro – in vivo extrapolations to support this transition. However, since these services are developed independently and provided by different groups world-wide, there is no standardized way how to access the data or run modelling workflows. To overcome the fragmentation of data and tools, OpenRiskNet will provide open e-Infrastructure resources and services to a variety of communities requiring chemical risk assessment, including chemicals, cosmetic ingredients, therapeutic agents, and nanomaterials. OpenRiskNet will combine the achievements from earlier projects for generating modeling and validation workflows, knowledge integration and data management as well as include all ongoing projects and important stakeholders through an associated partner programme. The main components of the infrastructure will be an interoperability layer added to every service to describe the functionality and guaranteeing technical and semantic interoperability, a discovery service, deployment options based on container technology, and packaging of the infrastructure into virtual instances. This will be complemented by training and support on integration of specific services based on prototype implementation, usage of standard file formats for data sharing including the generation of templates for data and metadata, as well as the harmonized usage of ontologies. Case studies will demonstrate the applicability of the infrastructure in productive settings supporting research and innovation in safer product design and risk assessment.
Final report on the management process | Documents, reports | 2020-04-25 00:24:00 |
Report on the results of the Implementation Challenge | Documents, reports | 2020-04-25 00:19:36 |
Fully functional support infrastructure | Demonstrators, pilots, prototypes | 2020-04-25 00:24:56 |
Associated partner program is established | Other | 2020-04-25 00:24:37 |
Initial version of data management plan | Open Research Data Pilot | 2020-04-25 00:24:16 |
Reference OpenRiskNet system available online | Demonstrators, pilots, prototypes | 2020-04-25 00:21:15 |
Data management, maintenance and sustainability plan | Documents, reports | 2020-04-25 00:23:29 |
Report of the Service Integration with OpenRiskNet (Intermediate Report) | Documents, reports | 2020-04-25 00:18:50 |
Finalization of case studies and analysis of remaining weaknesses | Other | 2020-04-25 00:20:35 |
Final API available for internal and external service providers | Demonstrators, pilots, prototypes | 2020-04-25 00:18:35 |
Compute and data federation | Other | 2020-04-25 00:19:16 |
Dissemination & Training Activities (Final Report) | Documents, reports | 2020-04-25 00:21:57 |
Report on requirement analysis and recommendations for WP2-4 including Data Management Plan | Documents, reports | 2020-04-25 00:21:35 |
Report of the Service Integration with OpenRiskNet (Final Report) | Documents, reports | 2020-04-25 00:23:45 |
Final definition of case studies | Other | 2020-02-19 16:31:30 |
Report on Re-Identification Risks and Private by Design Risk Management | Documents, reports | 2020-02-19 16:31:30 |
Report on deployment of virtual infrastructures with service discovery and container orchestration | Demonstrators, pilots, prototypes | 2020-02-19 16:31:30 |
Dissemination & Training Activities (Intermediate Report) | Documents, reports | 2020-02-19 16:31:30 |
Development infrastructure online | Demonstrators, pilots, prototypes | 2020-02-19 16:31:30 |
First documentation of the core e-infrastructure | Documents, reports | 2020-02-19 16:31:30 |
First report on the management process | Documents, reports | 2020-02-19 16:31:30 |
Initial API version provided to providers of services | Demonstrators, pilots, prototypes | 2020-02-19 16:31:30 |
Report of the Service Integration with OpenRiskNet (Initial Deployment) | Documents, reports | 2020-02-19 16:31:30 |
Take a look to the deliverables list in detail: detailed list of OpenRiskNet deliverables.
year | authors and title | journal | last update |
---|---|---|---|
2018 |
Jennen, Danyel; Dudgeon, Tim; Sarimveis, Haralambos; Doganis, Philip; Karatzas, Pantelis; Rautenberg, Micha; Willighagen, Egon; Exner, Thomas Report of the Service Integration with OpenRiskNet - Initial Deployment (Deliverable 4.1) published pages: , ISSN: , DOI: 10.5281/zenodo.1484309 |
2 | 2020-02-19 |
2018 |
Farcal , Lucian; Exner, Thomas; Hardy, Barry First report on the management process (Deliverable 5.1) published pages: , ISSN: , DOI: 10.5281/zenodo.1484358 |
5 | 2020-02-19 |
2018 |
Spjuth, Ola; Farcal, Lucian; Lynch, Iseult; Dudgeon, Tim; Exner, Thomas Fully functional support infrastructure (Deliverable 3.3) published pages: , ISSN: , DOI: 10.5281/zenodo.2558121 |
2 | 2020-02-19 |
2019 |
Boudellioua, Imane; Kulmanov, Maxat; Schofield, Paul N.; Gkoutos, Georgios V.; Hoehndorf, Robert DeepPVP: phenotype-based prioritization of causative variants using deep learning. published pages: , ISSN: 1471-2105, DOI: 10.17863/CAM.36763 |
BMC Bioinformatics, Vol 20, Iss 1, Pp 1-8 (2019) 4 | 2020-02-19 |
2018 |
Farcal, Lucian; Bachler, Daniel; Dokler, Joh; Exner, Thomas Report on requirements analysis and recommendations for WP2-4 (Deliverable 1.1) published pages: , ISSN: , DOI: 10.5281/zenodo.2557731 |
4 | 2020-02-19 |
2018 |
Farcal, Lucian; Exner, Thomas Report on Re-Identification Risks and Private by Design Risk Management (Deliverable 4.4) published pages: , ISSN: , DOI: 10.5281/zenodo.1484319 |
5 | 2020-02-19 |
2018 |
Danyel, Jennen; Bayjanov, Jumamurat; Farcal, Lucian; Oki, Noffisat; Geerke, Daan; Doganis, Philip; Martens, Marvin; Willighagen, Egon; Gebele, Denis; Jacobs, Marc; Dudgeon, Tim; Lynch, Iseult; Exner, Thomas Report of the Service Integration with OpenRiskNet (Intermediate Report) (Deliverable 4.2) published pages: , ISSN: , DOI: 10.5281/zenodo.2596998 |
5 | 2020-02-19 |
2017 |
Philip Doganis, Georgia Tsiliki, Charalampos Chomenidis, Angelos Valsamis, George Drakakis, Evangelia Anagnostopoulou, Haralambos Sarimveis Jaqpot: an open source web platform for modelling and model publishing integrated into a safety assessment e-infrastructure published pages: , ISSN: , DOI: |
Open Science Fair 2017 | 2020-02-19 |
2017 |
Ola Spjuth Data-intensive bioinformatics on HPC and Cloud published pages: , ISSN: , DOI: |
COST-CHARME \'Big Data Training School for Life Sciences\' | 2020-02-19 |
2018 |
Maris Lapins, Staffan Arvidsson, Samuel Lampa, Arvid Berg, Wesley Schaal, Jonathan Alvarsson, Ola Spjuth A confidence predictor for logD using conformal regression and a support-vector machine published pages: , ISSN: 1758-2946, DOI: 10.1186/s13321-018-0271-1 |
Journal of Cheminformatics 10/1 | 2020-02-19 |
2017 |
Exner, Thomas Towards Semantic Interoperability of Publicly Available Data published pages: , ISSN: , DOI: 10.5281/zenodo.831444 |
OpenTox USA | 2020-02-19 |
2017 |
Iseult Lynch Characterisation of intrinsic and extrinsic nanomaterial characteristics: the need for relevant exposure media supplemented with appropriate biomolecules published pages: , ISSN: , DOI: |
OpenTox Euro 2017 | 2020-02-19 |
2017 |
Imane Boudellioua, Rozaimi B. Mahamad Razali, Maxat Kulmanov, Yasmeen Hashish, Vladimir B. Bajic, Eva Goncalves-Serra, Nadia Schoenmakers, Georgios V. Gkoutos, Paul N. Schofield, Robert Hoehndorf Semantic prioritization of novel causative genomic variants published pages: e1005500, ISSN: 1553-7358, DOI: 10.1371/journal.pcbi.1005500 |
PLOS Computational Biology 13/4 | 2020-02-19 |
2017 |
Thomas Exner Towards Semantic Interoperability of Publicly Available Data published pages: , ISSN: , DOI: |
OpenTox Euro 2017 | 2020-02-19 |
2017 |
Thomas Exner The OpenRiskNet Project published pages: , ISSN: , DOI: |
OpenTox Euro 2017 | 2020-02-19 |
2017 |
Tim Dudgeon Nextflow for chemistry - crossing the divide published pages: , ISSN: , DOI: |
Nextflow workshop | 2020-02-19 |
2017 |
Ola Spjuth Data-intensive applications on cloud computing resources: Applications in life sciences published pages: , ISSN: , DOI: |
2nd international de.NBI symposium | 2020-02-19 |
2017 |
Marvin Martens, Chris Evelo, Egon Willighagen The future of regulatory toxicity assessment: Adverse Outcome Pathways published pages: , ISSN: , DOI: |
ByteMAL (Bioinformatics for Young inTernational researchers Expo: Maastricht-Aachen-Liège) | 2020-02-19 |
2017 |
Marvin Martens Enriching Key Events in Adverse Outcome Pathways with links to biomolecular databases to allow experimental data analysis for regulatory risk assessment published pages: , ISSN: , DOI: |
OpenTox Euro 2017 | 2020-02-19 |
2018 |
Exner, Thomas; Dokler, Joh; Bachler, Daniel; Farcal, Lucian; Evelo, Chris; Willighagen, Egon; Jacobs, Marc; Doganis, Philip; Sarimveis, Haralambos; Lynch, Iseult; Kramer, Stefan; Notredame, Cedric; Jennen, Danyel; Gkoutos, Georgios; Spjuth, Ola; Jennings, Paul; Dudgeon, Tim; Bois, Frederic; Hardy, Barry OpenRiskNet, an open e-infrastructure to support data sharing, knowledge integration and in silico analysis and modelling in risk assessment published pages: , ISSN: , DOI: 10.5281/zenodo.1199286 |
SOT 2018 (Society of Toxicology 57th Annual Meeting and ToxExpo) 1 | 2020-02-19 |
2017 |
Chris Evelo If we all jump together, could we make the earth move? published pages: , ISSN: , DOI: |
OpenTox Euro 2017 | 2020-02-19 |
2018 |
J.R. Bayjanov, J.C. Kleinjans, D.G.J. Jennen Meta-analysis for genotoxicity prediction using data from multiple human in vitro cell models published pages: S100-S101, ISSN: 0378-4274, DOI: 10.1016/j.toxlet.2018.06.608 |
Toxicology Letters 295 | 2020-02-19 |
2018 |
Dudgeon, Tim; Spjuth, Ola; Bois, Frederic; Bachler, Daniel Development infrastructure online (Deliverable D2.1) published pages: , ISSN: , DOI: 10.5281/zenodo.1479138 |
1 | 2020-02-19 |
2018 |
Doganis, Philip; Karatzas, Pantelis; Sarimveis, Harry; Dudgeon, Tim; Spjuth, Ola; Farcal, Lucian; Exner, Thomas; Lynch, Iseult; Hardy, Barry Dissemination & Training Activities - Intermediate Report (Deliverable 3.4) published pages: , ISSN: , DOI: 10.5281/zenodo.1479648 |
2 | 2020-02-19 |
2018 |
Rautenberg, Micha; Karwath, Andreas; Kramer, Stefan; Dudgeon, Tim; Spjuth, Ola; Bachler, Daniel; Exner, Thomas; Dokler, Joh; Sarimveis, Haralambos; Valsamis, Angelos; Doganis, Philip; Willighagen, Egon; Bois, Frederic Initial API version provided to providers of services (Deliverable 2.2) published pages: , ISSN: , DOI: 10.5281/zenodo.1479444 |
3 | 2020-02-19 |
2018 |
Jennings, Paul; Exner, Thomas; Farcal, Lucian; Oki, Noffisat; Sarimveis, Harry; Doganis, Philip; Jennen, Danyel; Geerke, Daan; Willighagen, Egon; Bois, Frederic; Rautenberg, Micha; Dudgeon, Tim; Hardy, Barry Final definition of case studies (Deliverable 1.3) published pages: , ISSN: , DOI: 10.5281/zenodo.1479127 |
1 | 2020-02-19 |
2018 |
Samuel Lampa, Jonathan Alvarsson, Staffan Arvidsson Mc Shane, Arvid Berg, Ernst Ahlberg, Ola Spjuth Predicting Off-Target Binding Profiles With Confidence Using Conformal Prediction published pages: , ISSN: 1663-9812, DOI: 10.3389/fphar.2018.01256 |
Frontiers in Pharmacology 9 | 2020-02-19 |
2018 |
Spjuth, Ola; Dudgeon, Tim; Bachler, Daniel; Gebele, Denis; Rautenberg, Micha; Alvarsson, Jonathan; Karatzas, Pantelis; Willighagen, Egon; Evelo, Chris; Martens, Marvin; Exner, Thomas Report on deployment of virtual infrastructures with service discovery and container orchestration (Deliverable 2.3) published pages: , ISSN: , DOI: 10.5281/zenodo.1479475 |
1 | 2020-02-19 |
2018 |
M. Martens, E. Willighagen, P. Nymark, R. Grafström, L.D. Burgoon, H.T. Aladjov, F. Torres Andón, C.T. Evelo Introducing WikiPathways to link molecular pathways to adverse outcome pathways to support regulatory risk assessment published pages: S227-S228, ISSN: 0378-4274, DOI: 10.1016/j.toxlet.2018.06.962 |
Toxicology Letters 295 | 2020-02-19 |
2018 |
T.E. Exner, J. Dokler, D. Bachler, L.R. Farcal, C.T. Evelo, E. Willighagen, D.G.J. Jennen, M. Jabocs, P. Doganis, H. Sarimveis, I. Lynch, G. Gkoutos, S. Kramer, C. Notredame, O. Spjuth, P. Jennings, T. Dudgeon, F. Bois, B. Hardy OpenRiskNet, an open e-infrastructure to support data sharing, knowledge integration and in silico analysis and modelling in risk assessment published pages: S104, ISSN: 0378-4274, DOI: 10.1016/j.toxlet.2018.06.617 |
Toxicology Letters 295 | 2020-02-19 |
Are you the coordinator (or a participant) of this project? Plaese send me more information about the "OPENRISKNET" project.
For instance: the website url (it has not provided by EU-opendata yet), the logo, a more detailed description of the project (in plain text as a rtf file or a word file), some pictures (as picture files, not embedded into any word file), twitter account, linkedin page, etc.
Send me an email (fabio@fabiodisconzi.com) and I put them in your project's page as son as possible.
Thanks. And then put a link of this page into your project's website.
The information about "OPENRISKNET" are provided by the European Opendata Portal: CORDIS opendata.